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2026 Journal Article Chimeric reference panels for genomic imputationZhou, Meikun, James, Maddie E., Engelstädter, Jan and Ortiz-Barrientos, Daniel (2026). Chimeric reference panels for genomic imputation. Genetics, 232 (1) iyaf212, 1-16. doi: 10.1093/genetics/iyaf212 |
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2025 Journal Article Pangenomics in the <i>Mimulus guttatus</i> Species ComplexJames, Maddie E. (2025). Pangenomics in the Mimulus guttatus Species Complex. Molecular Ecology Resources, 26 (1) e70087, e70087. doi: 10.1111/1755-0998.70087 |
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2025 Conference Publication Leveraging local adaptations for crop improvementThulaseedharan, Aparna, James, Maddie, Smith, Millicent, Hickey, Lee and Ortiz-Barrientos, Daniel (2025). Leveraging local adaptations for crop improvement. Australasian Evolution Society Conference, Brisbane, QLD, Australia, 1-3 October 2025. |
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2025 Journal Article From trees to traits: a review of advances in PhyloG2P methods and future directionsMacdonald, Arlie R., James, Maddie E., Mitchell, Jonathan D. and Holland, Barbara R. (2025). From trees to traits: a review of advances in PhyloG2P methods and future directions. Genome Biology and Evolution, 17 (9) evaf150, 1-18. doi: 10.1093/gbe/evaf150 |
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2025 Journal Article Ecological and mutation‐order speciation in SenecioJames, Maddie E., Melo, Maria C., Roda, Federico, Bernal‐Franco, Diana, Wilkinson, Melanie J., Walter, Gregory M., Liu, Huanle, Engelstädter, Jan and Ortiz‐Barrientos, Daniel (2025). Ecological and mutation‐order speciation in Senecio. Molecular Ecology, 34 (22) e70090, e70090. doi: 10.1111/mec.70090 |
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2025 Conference Publication Leveraging local adaptation for improving Australian mungbeanThulaseedharan, Aparna, James, Maddie, Smith, Millicent, Hickey, Lee and Ortiz-Barrientos, Daniel (2025). Leveraging local adaptation for improving Australian mungbean. Breeding Horizons, Brisbane, QLD, Australia, 21-24 July 2025. |
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2025 Book Chapter Genetic Basis of AdaptationJames, Maddie E. and Ortiz-Barrientos, Daniel (2025). Genetic Basis of Adaptation. Reference Module in Life Sciences. (pp. 1-1) Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-443-15750-9.00112-9 |
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2024 Journal Article The genomic consequences of selection across developmentJames, Maddie E. and Ortiz‐Barrientos, Daniel (2024). The genomic consequences of selection across development. Molecular Ecology, 33 (4) e17280, e17280. doi: 10.1111/mec.17280 |
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2023 Journal Article Uncovering the genetic architecture of parallel evolutionJames, Maddie E., Allsopp, Robin N., Groh, Jeffrey S., Kaur, Avneet, Wilkinson, Melanie J. and Ortiz‐Barrientos, Daniel (2023). Uncovering the genetic architecture of parallel evolution. Molecular Ecology, 32 (20), 5575-5589. doi: 10.1111/mec.17134 |
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2023 Journal Article Replicated evolution in plantsJames, Maddie E., Brodribb, Tim, Wright, Ian J., Rieseberg, Loren H. and Ortiz-Barrientos, Daniel (2023). Replicated evolution in plants. Annual Review of Plant Biology, 74 (1), 697-725. doi: 10.1146/annurev-arplant-071221-090809 |
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2023 Other Outputs Data associated with publication: James et al. "Uncovering the genetic architecture of parallel evolution"Allsopp, Robin, James, Maddie, Ortiz-Barrientos, Daniel, Wilkinson, Melanie, Groh, Jeffrey and Kaur, Avneet (2023). Data associated with publication: James et al. "Uncovering the genetic architecture of parallel evolution". The University of Queensland. (Dataset) doi: 10.48610/40dec7a |
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2022 Journal Article The influence of genetic structure on phenotypic diversity in the Australian mango (Mangifera indica) gene poolWilkinson, Melanie J., Yamashita, Risa, James, Maddie E., Bally, Ian S. E., Dillon, Natalie L., Ali, Asjad, Hardner, Craig M. and Ortiz-Barrientos, Daniel (2022). The influence of genetic structure on phenotypic diversity in the Australian mango (Mangifera indica) gene pool. Scientific Reports, 12 (1) 20614, 1-13. doi: 10.1038/s41598-022-24800-7 |
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2022 Journal Article Digest: Stable phenotypes, fluid genotypes: how stochasticity impacts network evolution and speciationJames, Maddie E., O'Brien, Nicholas L. V. and Bukkuri, Anuraag (2022). Digest: Stable phenotypes, fluid genotypes: how stochasticity impacts network evolution and speciation. Evolution, 76 (4), 821-823. doi: 10.1111/evo.14452 |
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2021 Journal Article Adaptive divergence in shoot gravitropism creates hybrid sterility in an Australian wildflowerWilkinson, Melanie J., Roda, Federico, Walter, Greg M., James, Maddie E., Nipper, Rick, Walsh, Jessica, Allen, Scott L., North, Henry L., Beveridge, Christine A. and Ortiz-Barrientos, Daniel (2021). Adaptive divergence in shoot gravitropism creates hybrid sterility in an Australian wildflower. Proceedings of the National Academy of Sciences, 118 (47) e2004901118, e2004901118. doi: 10.1073/pnas.2004901118 |
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2021 Journal Article Phenotypic and genotypic parallel evolution in parapatric ecotypes of SenecioJames, Maddie E., Wilkinson, Melanie J., Bernal, Diana M., Liu, Huanle, North, Henry L., Engelstädter, Jan and Ortiz‐Barrientos, Daniel (2021). Phenotypic and genotypic parallel evolution in parapatric ecotypes of Senecio. Evolution, 75 (12), 3115-3131. doi: 10.1111/evo.14387 |
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2021 Journal Article Uncovering the worldwide diversity and evolution of the virome of the mosquitoes Aedes aegypti and Aedes albopictusParry, Rhys, James, Maddie E. and Asgari, Sassan (2021). Uncovering the worldwide diversity and evolution of the virome of the mosquitoes Aedes aegypti and Aedes albopictus. Microorganisms, 9 (8) 1653, 1653. doi: 10.3390/microorganisms9081653 |
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2021 Journal Article Highly replicated evolution of parapatric ecotypesJames, Maddie E., Arenas-Castro, Henry, Groh, Jeffrey S., Allen, Scott L., Engelstädter, Jan and Ortiz-Barrientos, Daniel (2021). Highly replicated evolution of parapatric ecotypes. Molecular Biology and Evolution, 38 (11), 4805-4821. doi: 10.1093/molbev/msab207 |
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2021 Other Outputs The nature of parallel evolutionJames, Maddie (2021). The nature of parallel evolution. PhD Thesis, School of Biological Sciences, The University of Queensland. doi: 10.14264/f9e2a5c |
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2021 Other Outputs Data associated with forthcoming publication - Wilkinson et al. 2021 - "Adaptive divergence in shoot gravitropism creates hybrid sterility in an Australian wildflower"Wilkinson, Melanie J., Roda, Federico, Walter, Greg M., James, Maddie E., Nipper, Rick, Walsh, Jessica, Allen, Scott L., North, Henry L., Beveridge, Christine A. and Ortiz-Barrientos, Daniel (2021). Data associated with forthcoming publication - Wilkinson et al. 2021 - "Adaptive divergence in shoot gravitropism creates hybrid sterility in an Australian wildflower". The University of Queensland. (Dataset) doi: 10.48610/2c603c6 |
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2017 Journal Article Evolution of recombination rates and the genomic landscape of speciationOrtiz-Barrientos, D. and James, M. E. (2017). Evolution of recombination rates and the genomic landscape of speciation. Journal of Evolutionary Biology, 30 (8), 1519-1521. doi: 10.1111/jeb.13116 |
