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2015 Journal Article Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal ComplexityGaiti, Federico, Fernandez-Valverde, Selene L., Nakanishi, Nagayasu, Calcino, Andrew D., Yanai, Itai, Tanurdzic, Milos and Degnan, Bernard M. (2015). Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal Complexity. Molecular Biology and Evolution, 32 (9), 2367-2382. doi: 10.1093/molbev/msv117 |
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2015 Journal Article Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandicaFernandez-Valverde, Selene L., Calcino, Andrew D. and Degnan, Bernard M. (2015). Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica. BMC Genomics, 16 (1) 387, 1-11. doi: 10.1186/s12864-015-1588-z |
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2015 Book Chapter PoriferaDegnan, Bernard M., Adamska, Maja, Richards, Gemma S., Larroux, Claire, Leininger, Sven, Bergum, Brith, Calcino, Andrew, Taylor, Karin, Nakanishi, Nagayasu and Degnan, Sandie M. (2015). Porifera. Evolutionary developmental biology of invertebrates 1: introduction, non-bilateria, acoelomorpha, xenoturbellida, chaetognatha. (pp. 65-106) edited by Andreas Wanninger. Vienna, Austria: Springer Verlag. doi: 10.1007/978-3-7091-1862-7 |
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2015 Book Chapter How to build an allorecognition system: a guide for prospective multicellular OrganismsGrice, Laura F. and Degnan, Bernard M. (2015). How to build an allorecognition system: a guide for prospective multicellular Organisms. Evolutionary transitions to multicellular life. (pp. 395-424) edited by Iñaki Ruiz-Trillo and Aurora M. Nedelcu. New York, NY, United States: Springer. doi: 10.1007/978-94-017-9642-2_19 |
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2015 Journal Article The origin of the ADAR gene family and animal RNA editingGrice, Laura F. and Degnan, Bernard M. (2015). The origin of the ADAR gene family and animal RNA editing. BMC Evolutionary Biology, 15 (1) 4, 1-7. doi: 10.1186/s12862-015-0279-3 |
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2015 Conference Publication Sensory flask cells in sponge larvae regulate metamorphosis via calcium signalingNakanishi, Nagayasu, Stoupin, Daniel, Degnan, Sandie M. and Degnan, Bernard M. (2015). Sensory flask cells in sponge larvae regulate metamorphosis via calcium signaling. Annual meeting of the Society for Integrative and Comparative Biology, West Palm Beach, Florida, United States, 3-7 January 2015. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/icb/icv014 |
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2015 Conference Publication Sensory biology of sponge settlement and metamorphosis: towards defining the baseline for nervous system evolutionNakanishi, N., Degnan, S. M. and Degnan, B. M. (2015). Sensory biology of sponge settlement and metamorphosis: towards defining the baseline for nervous system evolution. Annual Meeting of the Society for Integrative and Comparative Biology (SICB), West Palm Beach Fl, 3-7 January 2015. Oxford, United Kingdom: Oxford University Press. |
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2014 Journal Article Genomic organization of Hox and ParaHox clusters in the echinoderm, Acanthaster planciBaughman, Kenneth W., McDougall, Carmel, Cummins, Scott F., Hall, Mike, Degnan, Bernard M., Satoh, Nori and Shoguchi, Eiichi (2014). Genomic organization of Hox and ParaHox clusters in the echinoderm, Acanthaster planci. Genesis: The Journal of Genetics and Development, 53 (12), 952-958. doi: 10.1002/dvg.22840 |
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2014 Journal Article POU genes are expressed during the formation of individual ganglia of the cephalopod central nervous systemWollesen, Tim, McDougall, Carmel, Degnan, Bernard M. and Wanninger, Andreas (2014). POU genes are expressed during the formation of individual ganglia of the cephalopod central nervous system. EvoDevo, 5 (41) 41, 41. doi: 10.1186/2041-9139-5-41 |
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2014 Journal Article Reduced loads of pre-existing Gill-associated virus (GAV) infection in juvenile Penaeus monodon injected with single or multiple GAV-specific dsRNAsSellars, Melony J., Rao, Min, O'Leary, Zach, Wood, Andrew, Degnan, Bernard M. and Cowley, Jeff A. (2014). Reduced loads of pre-existing Gill-associated virus (GAV) infection in juvenile Penaeus monodon injected with single or multiple GAV-specific dsRNAs. Aquaculture, 434, 272-276. doi: 10.1016/j.aquaculture.2014.08.017 |
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2014 Journal Article Control of shell pigmentation by secretory tubules in the abalone mantleBudd, Alyssa, McDougall, Carmel, Green, Kathryn and Degnan, Bernard M. (2014). Control of shell pigmentation by secretory tubules in the abalone mantle. Frontiers in Zoology, 11 (1) 62. doi: 10.1186/s12983-014-0062-0 |
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2014 Journal Article Evolutionary origin of gastrulation: Insights from sponge developmentNakanishi, Nagayasu, Sogabe, Shunsuke and Degnan, Bernard M. (2014). Evolutionary origin of gastrulation: Insights from sponge development. BMC Biology, 12 (26) 26, 26. doi: 10.1186/1741-7007-12-26 |
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2014 Journal Article BLIND ordering of large-scale transcriptomic developmental timecoursesAnavy, Leon, Levin, Michal, Khair, Sally, Nakanishi, Nagayasu, Fernandez-Valverde, Selene L., Degnan, Bernard M. and Yanai, Itai (2014). BLIND ordering of large-scale transcriptomic developmental timecourses. Development (Cambridge), 141 (5), 1161-1166. doi: 10.1242/dev.105288 |
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2014 Journal Article Analysis of the biomass composition of the demosponge Amphimedon queenslandica on Heron Island Reef, AustraliaWatson, Jabin R., Brennan, Timothy C. R., Degnan, Bernard M., Degnan, Sandie M. and Kromer, Jens O. (2014). Analysis of the biomass composition of the demosponge Amphimedon queenslandica on Heron Island Reef, Australia. Marine Drugs, 12 (6), 3733-3753. doi: 10.3390/md12063733 |
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2014 Book Chapter Determining the biomass composition of a sponge holobiont for flux analysisWatson, Jabin, Degnan, Bernard, Degnan, Sandie and Krömer, Jens O. (2014). Determining the biomass composition of a sponge holobiont for flux analysis. Metabolic flux analysis: methods and protocols. (pp. 107-125) edited by Jens O. Krömer, Lars K. Nielsen and Lars M. Blank. New York, NY, United States: Humana Press. doi: 10.1007/978-1-4939-1170-7_7 |
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2014 Journal Article Evolution of the tyrosinase gene family in bivalve molluscs: independent expansion of the mantle gene repertoireAguilera, Felipe, McDougall, Carmel and Degnan, Bernard M. (2014). Evolution of the tyrosinase gene family in bivalve molluscs: independent expansion of the mantle gene repertoire. Acta Biomaterialia, 10 (9), 3855-3865. doi: 10.1016/j.actbio.2014.03.031 |
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2013 Journal Article PearlsMcDougall, Carmel, Aguilera, Felipe, Moase, Patrick, Lucas, John S. and Degnan, Bernard M. (2013). Pearls. Current Biology, 23 (16), R671-R673. doi: 10.1016/j.cub.2013.05.042 |
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2013 Journal Article Origin, evolution and classification of type-3 copper proteins: lineage-specific gene expansions and losses across the MetazoaAguilera, Felipe, McDougall, Carmel and Degnan, Bernard M. (2013). Origin, evolution and classification of type-3 copper proteins: lineage-specific gene expansions and losses across the Metazoa. BMC Evolutionary Biology, 13 (1) 96, 96.1-96.12. doi: 10.1186/1471-2148-13-96 |
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2013 Journal Article Rapid evolution of pearl oyster shell matrix proteins with repetitive, low-complexity domainsMcDougall, Carmel, Aguilera, Felipe and Degnan, Bernard M. (2013). Rapid evolution of pearl oyster shell matrix proteins with repetitive, low-complexity domains. Journal of the Royal Society Interface, 10 (82) 20130041, 20130041.-20130041.10. doi: 10.1098/rsif.2013.0041 |
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2013 Book Chapter Functionalization of a protosynaptic gene expression networkConaco, Cecilia, Bassett, Danielle S., Zhou, Hongjun, Arcila, Mary Luz, Degnan, Sandie M., Degnan, Bernard M. and Kosik, Kenneth S. (2013). Functionalization of a protosynaptic gene expression network. In the light of evolution: volume VI: brain and behavior. (pp. 3-19) Washington, DC, United States: National Academies Press. |
