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2025 Other Outputs Raw AmpSeq reads for the quantification of CRISPR/SpCas9 genome edits in Nicotiana benthamiana plantsGong, Zheng, Zhang, Yan, Xia, Di, Yoon, Sohye, Crisp, Peter and Ramon Botella, Jose (2025). Raw AmpSeq reads for the quantification of CRISPR/SpCas9 genome edits in Nicotiana benthamiana plants. The University of Queensland. (Dataset) doi: 10.48610/a32ca0d |
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2025 Journal Article The GhANT-GoPGF module regulates pigment gland development in cotton leavesLong, Lu, Zhang, Zhen-Nan, Xu, Fu-Chun, Ma, Jia-Yi, Shang, Shen-Zhai, Song, Hao-Ge, Wu, Jian-Feng, Zhao, Xiao-Tong, Botella, Jose Ramon, Jin, Shuang-Xia and Gao, Wei (2025). The GhANT-GoPGF module regulates pigment gland development in cotton leaves. Cell Reports, 44 (1) 115112, 115112-1. doi: 10.1016/j.celrep.2024.115112 |
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2024 Journal Article Regulation of lignin biosynthesis by GhCAD37 affects fiber quality and anther vitality in upland cottonLi, Haipeng, Guo, Jinggong, Li, Kun, Gao, Yuwen, Li, Hang, Long, Lu, Chu, Zongyan, Du, Yubei, Zhao, Xulong, Zhao, Bing, Lan, Chen, Botella, José Ramón, Zhang, Xuebin, Jia, Kun-Peng and Miao, Yuchen (2024). Regulation of lignin biosynthesis by GhCAD37 affects fiber quality and anther vitality in upland cotton. Plant Journal, 120 (6), 2846-2860. doi: 10.1111/tpj.17149 |
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2024 Journal Article Characterization of two lycopene beta-cyclases reveal their essential roles in photoprotection in Nicotiana tabacumLi, Kun, Shen, Mengxin, Wang, Ran, Yang, Wenqi, Zou, Lingmin, Jia, Kun-Peng, Li, Haipeng, Xu, Rui, Jia, Qianyun, Zhang, Cheng, Wang, Yujie, Duan, Zhikun, Sun, Xuwu, Botella, Jose R., Miao, Yuchen and Guo, Jinggong (2024). Characterization of two lycopene beta-cyclases reveal their essential roles in photoprotection in Nicotiana tabacum. Environmental and Experimental Botany, 228 106039. doi: 10.1016/j.envexpbot.2024.106039 |
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2024 Journal Article Sequestration of DBR1 to stress granules promotes lariat intronic RNAs accumulation for heat-stress toleranceWu, Chengyun, Wang, Xingsong, Li, Yan, Zhen, Weibo, Wang, Chunfei, Wang, Xiaoqing, Xie, Zhouli, Xu, Xiumei, Guo, Siyi, Botella, José Ramón, Zheng, Binglian, Wang, Wei, Song, Chun-Peng and Hu, Zhubing (2024). Sequestration of DBR1 to stress granules promotes lariat intronic RNAs accumulation for heat-stress tolerance. Nature Communications, 15 (1) 7696, 1-17. doi: 10.1038/s41467-024-52034-w |
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2024 Journal Article Integration of single-cell and spatial RNA sequencing uncovers spatiotemporal transition of fruit senescence trajectory from exocarp to mesocarp in Pitaya (Hylocereus undatus)Pang, Xinyue, Sun, Jiaju, Jia, Jingyu, Trusov, Yuri, Chandora, Rahul, Botella, José Ramon, Li, Xin and Gu, Shaobin (2024). Integration of single-cell and spatial RNA sequencing uncovers spatiotemporal transition of fruit senescence trajectory from exocarp to mesocarp in Pitaya (Hylocereus undatus). Postharvest Biology and Technology, 213 112954, 1-12. doi: 10.1016/j.postharvbio.2024.112954 |
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2024 Journal Article Geminiviral-induced genome editing using miniature CRISPR/Cas12j (CasΦ) and Cas12f variants in plantsGong, Zheng, Previtera, Dominic Andrew, Wang, Yijie and Botella, José Ramón (2024). Geminiviral-induced genome editing using miniature CRISPR/Cas12j (CasΦ) and Cas12f variants in plants. Plant Cell Reports, 43 (3) 71, 71. doi: 10.1007/s00299-023-03092-9 |
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2024 Journal Article Conserved Role of Heterotrimeric G Proteins in Plant Defense and Cell Death ProgressionKarimian, Parastoo, Trusov, Yuri and Botella, Jose Ramon (2024). Conserved Role of Heterotrimeric G Proteins in Plant Defense and Cell Death Progression. Genes, 15 (1) 115, 1-15. doi: 10.3390/genes15010115 |
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2023 Journal Article A low-cost, portable, dual-function readout device for amplification-based point-of-need diagnosticsZou, Yiping, Mason, Michael Glenn and Botella, Jose Ramon (2023). A low-cost, portable, dual-function readout device for amplification-based point-of-need diagnostics. Applied and Environmental Microbiology, 89 (12) A6, 1-17. doi: 10.1128/aem.00902-23 |
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2023 Conference Publication Use of piggery effluent for point-of-management diagnostics: A proof of conceptNaseem, M.N., Omaleki, L., Templeton, J.M., Muralidhar, M., Botella, J.R., Blackall, P.J. and Turni, C. (2023). Use of piggery effluent for point-of-management diagnostics: A proof of concept. Manipulating Pig Production XIX, Brisbane, QLD Australia, 13-16 November 2023. Amsterdam, Netherlands: Elsevier. doi: 10.1016/j.anscip.2023.09.008 |
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2023 Journal Article E3 ligases MAC3A and MAC3B ubiquitinate UBIQUITIN-SPECIFIC PROTEASE14 to regulate organ size in ArabidopsisGuo, Xiaopeng, Zhang, Xin, Jiang, Shan, Qiao, Xin, Meng, Bolun, Wang, Xiaohang, Wang, Yanan, Yang, Kaihuan, Zhang, Yilan, Li, Na, Chen, Tianyan, Kang, Yiyang, Yao, Mengyi, Zhang, Xuan, Wang, Xinru, Zhang, Erling, Li, Junhua, Yan, Dawei, Hu, Zhubing, Botella, José Ramón, Song, Chun-Peng, Li, Yunhai and Guo, Siyi (2023). E3 ligases MAC3A and MAC3B ubiquitinate UBIQUITIN-SPECIFIC PROTEASE14 to regulate organ size in Arabidopsis. Plant Physiology, 194 (2), 684-697. doi: 10.1093/plphys/kiad559 |
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2023 Journal Article Changing the diagnostic paradigm for sugarcane: development of a mill-based diagnostic for ratoon stunting disease in crude cane juiceBurman, Sriti, Mason, Michael G., Hintzsche, Jessica, Zou, Yiping, Gibbs, Lucy, MacGillycuddy, Laura, Magarey, Robert C. and Botella, José R. (2023). Changing the diagnostic paradigm for sugarcane: development of a mill-based diagnostic for ratoon stunting disease in crude cane juice. Frontiers in Plant Science, 14 1257894, 1-13. doi: 10.3389/fpls.2023.1257894 |
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2023 Journal Article PDC1 is activated by ABF4 and inhibits seed germination by promoting ROS accumulation in ArabidopsisLi, Liangliang, Li, Linxiao, Cui, Shenghui, Qian, Dongdong, Lyu, Shijie, Liu, Wencheng, Botella, José Ramón, Li, Huilin, Burritt, David J., Tran, Lam-Son Phan, Li, Weiqiang and Zhang, Yu (2023). PDC1 is activated by ABF4 and inhibits seed germination by promoting ROS accumulation in Arabidopsis. Environmental and Experimental Botany, 206 105188, 105188. doi: 10.1016/j.envexpbot.2022.105188 |
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2022 Journal Article Overexpression of AHL9 accelerates leaf senescence in Arabidopsis thalianaZhou, Yusen, Zhang, Xiaomin, Chen, Jing, Guo, Xiaopeng, Wang, Hongyan, Zhen, Weibo, Zhang, Junli, Hu, Zhubing, Zhang, Xuebing, Botella, José Ramón, Ito, Toshiro and Guo, Siyi (2022). Overexpression of AHL9 accelerates leaf senescence in Arabidopsis thaliana. BMC Plant Biology, 22 (1) 248, 1-12. doi: 10.1186/s12870-022-03622-9 |
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2022 Journal Article Insights into the molecular mechanisms of CRISPR/Cas9-mediated gene targeting at multiple loci in ArabidopsisZhang, Zhengjing, Zeng, Wenjie, Zhang, Wenxin, Li, Jing, Kong, Dali, Zhang, Lei, Wang, Rui, Peng, Fangnan, Kong, Zhe, Ke, Yongping, Zhang, Heng, Kim, Chanhong, Zhang, Huiming, Botella, Jose Ramón, Zhu, Jian-Kang and Miki, Daisuke (2022). Insights into the molecular mechanisms of CRISPR/Cas9-mediated gene targeting at multiple loci in Arabidopsis. Plant Physiology, 190 (4), 2203-2216. doi: 10.1093/plphys/kiac431 |
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2022 Journal Article Point-of-care DNA amplification for disease diagnosis and managementBotella, José R. (2022). Point-of-care DNA amplification for disease diagnosis and management. Annual Review of Phytopathology, 60 (1), 1-20. doi: 10.1146/annurev-phyto-021621-115027 |
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2022 Journal Article Are point of management assays relevant for food safety in the poultry industries?Templeton, J. M., Botella, J. R. and Blackall, P. J. (2022). Are point of management assays relevant for food safety in the poultry industries?. Microbiology Australia, 43 (2), 67-70. doi: 10.1071/MA22025 |
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2022 Journal Article Expanding the editing window of cytidine base editors with the Rad51 DNA-binding domain in riceWei, Chunjie, Liu, Hao, Wang, Wenwen, Luo, Pengyu, Chen, Qiuling, Li, Rou, Wang, Chong, Botella, José Ramón and Zhang, Hui (2022). Expanding the editing window of cytidine base editors with the Rad51 DNA-binding domain in rice. Frontiers in Plant Science, 13 865848, 1-9. doi: 10.3389/fpls.2022.865848 |
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2022 Journal Article Function of protein kinases in leaf senescence of plantsYang, Fengbo, Miao, Yuchen, Liu, Yuyue, Botella, Jose R., Li, Weiqiang, Li, Kun and Song, Chun-Peng (2022). Function of protein kinases in leaf senescence of plants. Frontiers in Plant Science, 13 864215, 1-16. doi: 10.3389/fpls.2022.864215 |
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2022 Journal Article Heterotrimeric G protein signaling in abiotic stressWang, Yijie and Botella, Jose Ramón (2022). Heterotrimeric G protein signaling in abiotic stress. Plants, 11 (7) 876, 876. doi: 10.3390/plants11070876 |
