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2024 Journal Article Effect of high-pressure on protein structure, refolding, and crystallizationBaldelli, Alberto, Shi, Jiahua, Singh, Anika, Guo, Yigong, Fathordoobady, Farahnaz, Amiri, Amir and Pratap-Singh, Anubhav (2024). Effect of high-pressure on protein structure, refolding, and crystallization. Food Chemistry Advances, 5 100741, 100741. doi: 10.1016/j.focha.2024.100741 |
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2024 Journal Article Inverse metabolic engineering based on metabonomics for efficient production of hydroxytyrosol by Saccharomyces cerevisiaeLiu, Yingjie, Gu, Bixuan, Shi, Jiahua, Fu, Changchun, Zhang, Xuepeng, Chen, Xinqi, Yang, Ruijin and Lyu, Xiaomei (2024). Inverse metabolic engineering based on metabonomics for efficient production of hydroxytyrosol by Saccharomyces cerevisiae. Bioresource Technology, 409 131187, 131187. doi: 10.1016/j.biortech.2024.131187 |
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2026 Journal Article From Unsupervised to Zero-Shot: 3D Domain Adaptation for Cryo-Electron Tomography SegmentationLi, Haoran, Li, Xingjian, Wang, Huan, Shi, Jiahua, Chen, Huaming, Du, Bo, Barthelemy, Johan, Kihara, Daisuke, Shen, Jun and Xu, Min (2026). From Unsupervised to Zero-Shot: 3D Domain Adaptation for Cryo-Electron Tomography Segmentation. International Journal of Computer Vision, 134 (5) 219. doi: 10.1007/s11263-026-02802-6 |
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2026 Journal Article MVGFormer: multi-view perspective with graph-guided transformer for cryo-ET segmentationLi, Haoran, Li, Xingjian, Wang, Huan, Shi, Jiahua, Chen, Huaming, Zhao, Yizhou, Du, Bo, Barthelemy, Johan, Kihara, Daisuke, Shen, Jun and Xu, Min (2026). MVGFormer: multi-view perspective with graph-guided transformer for cryo-ET segmentation. Knowledge-Based Systems, 331 114810, 1-15. doi: 10.1016/j.knosys.2025.114810 |
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2026 Journal Article A survey on graph neural networksZhang, Xinyang, Li, Shengrong, Li, Haoran, Gong, Peiliang, Shi, Jiahua, Shen, Jun, Tian, Chunwei, Zhang, Daoqiang and Zhu, Qi (2026). A survey on graph neural networks. IEEE Access, 14, 27491-27512. doi: 10.1109/access.2026.3665657 |
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2026 Journal Article Dual Visual Prompting with Context-Modulated Diffusion PromptsWang, Huan, Li, Haoran, Chen, Huaming, Yan, Jun, Shi, Jiahua and Shen, Jun (2026). Dual Visual Prompting with Context-Modulated Diffusion Prompts. IEEE Transactions on Multimedia, PP (99), 1-12. doi: 10.1109/tmm.2026.3660167 |
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2025 Journal Article Geographics and bacterial networks differently shape the acquired and latent global sewage resistomesMartiny, Hannah-Marie, Munk, Patrick, Fuschi, Alessandro, Becsei, Agnes, Pyrounakis, Nikiforos, Brinch, Christian, Joakim Larsson, D. G., Koopmans, Marion, Zaatout, Nawel, Rees, Catherine, Jiang, Guangming, Shi, Jiahua, Benka, Bernhard, Allerberger, Franz, Koeberl-Jelovcan, Sandra, Abdulla, Khalil Hasan, Thani, Ali Bin, Begum, Anowara, Worrell, Carlon, Dougnon, Tamegnon Victorien, Soria, Freddy, Mazalica, Natasa, Rahube, Teddie, Martins, Andreza Francisco, Tagliati, Carlos Alberto, Souza, Larissa Camila Ribeiro de, Nzouankeu, Ariane, Rehman, Muhammad Attiq, Gauthier, Jeff ... Global Sewage Consortium (2025). Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes. Nature Communications, 16 (1) 10278, 1-12. doi: 10.1038/s41467-025-66070-7 |
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2025 Journal Article An ascorbic acid responsive nanoprobe for food shelf-life determination and plant growth assessmentTian, Dihua, Zhang, Zexi, Plavilathundil, Suzanne Mathews, Tian, Xinyang, Seididamyeh, Maral, Alanazi, Mazen, Phan, Anh, Wu, Miaomiao, Shi, Jiahua, Sultanbawa, Yasmina, Carroll, Bernard J. and Zhang, Run (2025). An ascorbic acid responsive nanoprobe for food shelf-life determination and plant growth assessment. Food Chemistry, 492 (Pt 1) 145347, 1-11. doi: 10.1016/j.foodchem.2025.145347 |
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2025 Journal Article Deep learning-driven protein-ligand binding affinity prediction: data, architecture, training and evaluationLi, Zhiwei, Zhou, Guoqiang, Li, Haoran, Mi, Jiacong, Shi, Jiahua and Shen, Jun (2025). Deep learning-driven protein-ligand binding affinity prediction: data, architecture, training and evaluation. IEEE Transactions on Computational Biology and Bioinformatics, 22 (6), 3419-3437. doi: 10.1109/tcbbio.2025.3627203 |
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2025 Journal Article Genome-wide identification of plant C2 domain-containing protein family and the role of OsNTMC2T2.2 under chilling stress in riceZhao, Liyan, Wang, Jingzhen, Zhou, Yuntao, Shi, Jiahua, Liu, Guoquan, Xie, Guosheng and Wang, Lingqiang (2025). Genome-wide identification of plant C2 domain-containing protein family and the role of OsNTMC2T2.2 under chilling stress in rice. Environmental and Experimental Botany, 237 106202, 1-18. doi: 10.1016/j.envexpbot.2025.106202 |
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2025 Journal Article Rice-SVBDete: a detection algorithm for small vascular bundles in rice stem’s cross-sectionsZhu, Xiaoying, Zhou, Weiyu, Li, Jianguo, Yang, Mingchong, Zhou, Haiyu, Huang, Jiada, Shi, Jiahua, Shen, Jun, Pang, Guangyao and Wang, Lingqiang (2025). Rice-SVBDete: a detection algorithm for small vascular bundles in rice stem’s cross-sections. Frontiers in Plant Science, 16 1589161, 1589161. doi: 10.3389/fpls.2025.1589161 |
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2024 Journal Article Characterisation and quantification of phenolic, anthocyanidin and terpene species in plant foods and plant food-based complementary products with antioxidant and neuroprotective propertiesMay, Naomi, Shi, Jiahua, Clunas, Helen, de Sousa Alves Neri, Julianna Lys, Kelso, Celine, Morgan, Jody, Yu, Yinghua, Charlton, Karen and Weston-Green, Katrina (2024). Characterisation and quantification of phenolic, anthocyanidin and terpene species in plant foods and plant food-based complementary products with antioxidant and neuroprotective properties. Food and Function, 15 (23), 11537-11563. doi: 10.1039/d4fo02942a |
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2024 Journal Article Global disentangled graph convolutional neural network based on a graph topological metricLiu, Wenzhen, Zhou, Guoqiang, Mao, Xiaoyu, Bao, Shudi, Li, Haoran, Shi, Jiahua, Chen, Huaming, Shen, Jun and Huang, Yuanming (2024). Global disentangled graph convolutional neural network based on a graph topological metric. Knowledge-Based Systems, 284 111283, 1-10. doi: 10.1016/j.knosys.2023.111283 |
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2023 Journal Article Wastewater-based epidemiology of Campylobacter spp.: A systematic review and meta-analysis of influent, effluent, and removal of wastewater treatment plantsZhang, Shuxin, Shi, Jiahua, Li, Xuan, Tiwari, Ananda, Gao, Shuhong, Zhou, Xu, Sun, Xiaoyan, O'Brien, Jake W., Coin, Lachlan, Hai, Faisal and Jiang, Guangming (2023). Wastewater-based epidemiology of Campylobacter spp.: A systematic review and meta-analysis of influent, effluent, and removal of wastewater treatment plants. Science of The Total Environment, 903 166410, 1-13. doi: 10.1016/j.scitotenv.2023.166410 |
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2023 Journal Article Triplex qPCR assay for Campylobacter jejuni and Campylobacter coli monitoring in wastewaterZhang, Shuxin, Shi, Jiahua, Li, Xuan, Coin, Lachlan, O'Brien, Jake W., Sivakumar, Muttucumaru, Hai, Faisal and Jiang, Guangming (2023). Triplex qPCR assay for Campylobacter jejuni and Campylobacter coli monitoring in wastewater. Science of The Total Environment, 892 164574, 1-8. doi: 10.1016/j.scitotenv.2023.164574 |
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2023 Journal Article Investigating the therapeutic potential of plants and plant-based medicines: relevance to antioxidant and neuroprotective effectsMay, Naomi, de Sousa Alves Neri, Julianna Lys, Clunas, Helen, Shi, Jiahua, Parkes, Ella, Dongol, Anjila, Wang, Zhizhen, Naranjo, Carlos Jimenez, Yu, Yinghua, Huang, Xu-Feng, Charlton, Karen and Weston-Green, Katrina (2023). Investigating the therapeutic potential of plants and plant-based medicines: relevance to antioxidant and neuroprotective effects. Nutrients, 15 (18) 3912, 1-29. doi: 10.3390/nu15183912 |
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2023 Journal Article Fate of coronaviruses during the wastewater coagulation with ferric chlorideGuo, Ying, Shi, Jiahua, Sharma, Elipsha, Gao, Shuhong, Zhou, Xu, Liu, Yanchen, Sivakumar, Muttucumaru and Jiang, Guangming (2023). Fate of coronaviruses during the wastewater coagulation with ferric chloride. ACS - ES & T Water, 3 (10), 3206-3214. doi: 10.1021/acsestwater.3c00112 |
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2023 Journal Article The reduction of SARS-CoV-2 RNA concentration in the presence of sewer biofilmsZhang, Shuxin, Sharma, Elipsha, Tiwari, Ananda, Chen, Yan, Sherchan, Samendra P., Gao, Shuhong, Zhou, Xu, Shi, Jiahua and Jiang, Guangming (2023). The reduction of SARS-CoV-2 RNA concentration in the presence of sewer biofilms. Water, 15 (11) 2132, 1-15. doi: 10.3390/w15112132 |
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2023 Journal Article In-sewer decay and partitioning of Campylobacter jejuni and Campylobacter coli and implications for their wastewater surveillanceZhang, Shuxin, Shi, Jiahua, Sharma, Elipsha, Li, Xuan, Gao, Shuhong, Zhou, Xu, O'Brien, Jake, Coin, Lachlan, Liu, Yanchen, Sivakumar, Muttucumaru, Hai, Faisal and Jiang, Guangming (2023). In-sewer decay and partitioning of Campylobacter jejuni and Campylobacter coli and implications for their wastewater surveillance. Water Research, 233 119737, 1-9. doi: 10.1016/j.watres.2023.119737 |
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2023 Journal Article Effects of sewer biofilms on the degradability of carbapenems in wastewater using laboratory scale bioreactorsSharma, Elipsha, Sivakumar, Muttucumaru, Kelso, Celine, Zhang, Shuxin, Shi, Jiahua, Gao, Jianfa, Gao, Shuhong, Zhou, Xu and Jiang, Guangming (2023). Effects of sewer biofilms on the degradability of carbapenems in wastewater using laboratory scale bioreactors. Water Research, 233 119796, 1-10. doi: 10.1016/j.watres.2023.119796 |
