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2024 Journal Article Effect of high-pressure on protein structure, refolding, and crystallizationBaldelli, Alberto, Shi, Jiahua, Singh, Anika, Guo, Yigong, Fathordoobady, Farahnaz, Amiri, Amir and Pratap-Singh, Anubhav (2024). Effect of high-pressure on protein structure, refolding, and crystallization. Food Chemistry Advances, 5 100741, 100741. doi: 10.1016/j.focha.2024.100741 |
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2024 Journal Article Inverse metabolic engineering based on metabonomics for efficient production of hydroxytyrosol by Saccharomyces cerevisiaeLiu, Yingjie, Gu, Bixuan, Shi, Jiahua, Fu, Changchun, Zhang, Xuepeng, Chen, Xinqi, Yang, Ruijin and Lyu, Xiaomei (2024). Inverse metabolic engineering based on metabonomics for efficient production of hydroxytyrosol by Saccharomyces cerevisiae. Bioresource Technology, 409 131187, 131187. doi: 10.1016/j.biortech.2024.131187 |
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2024 Conference Publication FDNet: frequency domain denoising network for cell segmentation in astrocytes derived from induced pluripotent stem cellsLi, Haoran, Shi, Jiahua, Chen, Huaming, Du, Bo, Maksour, Simon, Phillips, Gabrielle, Dottori, Mirella and Shen, Jun (2024). FDNet: frequency domain denoising network for cell segmentation in astrocytes derived from induced pluripotent stem cells. 2024 IEEE International Symposium on Biomedical Imaging (ISBI), Athens, Greece, 27-30 May 2024. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/ISBI56570.2024.10635607 |
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2026 Journal Article From Unsupervised to Zero-Shot: 3D Domain Adaptation for Cryo-Electron Tomography SegmentationLi, Haoran, Li, Xingjian, Wang, Huan, Shi, Jiahua, Chen, Huaming, Du, Bo, Barthelemy, Johan, Kihara, Daisuke, Shen, Jun and Xu, Min (2026). From Unsupervised to Zero-Shot: 3D Domain Adaptation for Cryo-Electron Tomography Segmentation. International Journal of Computer Vision, 134 (5) 219. doi: 10.1007/s11263-026-02802-6 |
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2026 Conference Publication Aspergillus oryzae and Rhizopus oligosporus: Multi-Omics Characterisation of Fibre and Protein TransformationTong, Xin, Guo, Ziwei, Xiang, Yuwei, Turner, Mark and Shi, Jiahua (2026). Aspergillus oryzae and Rhizopus oligosporus: Multi-Omics Characterisation of Fibre and Protein Transformation. Queensland Mass Spectrometry Symposium (QMSS) 2026, Brisbane, QLD Australia, 28-29 January 2026. |
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2026 Conference Publication Valorisation of Brewers’ Spent Grain through Solid-State Fermentation: Protein Hydrolysis, Fiber Degradation and Release of Bioactive CompoundsGuo, Ziwei, Tong, Xin, Xiang, Yuwei, Turner, Mark and Shi, Jiahua (2026). Valorisation of Brewers’ Spent Grain through Solid-State Fermentation: Protein Hydrolysis, Fiber Degradation and Release of Bioactive Compounds. Queensland Mass Spectrometry Symposium (QMSS) 2026, Brisbane, QLD Australia, 28-29 January 2026. |
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2026 Journal Article MVGFormer: multi-view perspective with graph-guided transformer for cryo-ET segmentationLi, Haoran, Li, Xingjian, Wang, Huan, Shi, Jiahua, Chen, Huaming, Zhao, Yizhou, Du, Bo, Barthelemy, Johan, Kihara, Daisuke, Shen, Jun and Xu, Min (2026). MVGFormer: multi-view perspective with graph-guided transformer for cryo-ET segmentation. Knowledge-Based Systems, 331 114810, 1-15. doi: 10.1016/j.knosys.2025.114810 |
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2026 Journal Article A survey on graph neural networksZhang, Xinyang, Li, Shengrong, Li, Haoran, Gong, Peiliang, Shi, Jiahua, Shen, Jun, Tian, Chunwei, Zhang, Daoqiang and Zhu, Qi (2026). A survey on graph neural networks. IEEE Access, 14, 27491-27512. doi: 10.1109/access.2026.3665657 |
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2026 Conference Publication Towards Zero-Shot Diabetic Retinopathy Grading: Learning Generalized Knowledge via Prompt-Driven Matching and EmulatingWang, Huan, Li, Haoran, Lin, Yuxin, Chen, Huaming, Yan, Jun, Wang, Lijuan, Shi, Jiahua, Xu, Qihao, Hu, Yongting, Xu, Yong and Shen, Jun (2026). Towards Zero-Shot Diabetic Retinopathy Grading: Learning Generalized Knowledge via Prompt-Driven Matching and Emulating. Association for the Advancement of Artificial Intelligence. doi: 10.1609/aaai.v40i12.37948 |
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2026 Journal Article Dual Visual Prompting with Context-Modulated Diffusion PromptsWang, Huan, Li, Haoran, Chen, Huaming, Yan, Jun, Shi, Jiahua and Shen, Jun (2026). Dual Visual Prompting with Context-Modulated Diffusion Prompts. IEEE Transactions on Multimedia, PP (99), 1-12. doi: 10.1109/tmm.2026.3660167 |
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2025 Journal Article Geographics and bacterial networks differently shape the acquired and latent global sewage resistomesMartiny, Hannah-Marie, Munk, Patrick, Fuschi, Alessandro, Becsei, Agnes, Pyrounakis, Nikiforos, Brinch, Christian, Joakim Larsson, D. G., Koopmans, Marion, Zaatout, Nawel, Rees, Catherine, Jiang, Guangming, Shi, Jiahua, Benka, Bernhard, Allerberger, Franz, Koeberl-Jelovcan, Sandra, Abdulla, Khalil Hasan, Thani, Ali Bin, Begum, Anowara, Worrell, Carlon, Dougnon, Tamegnon Victorien, Soria, Freddy, Mazalica, Natasa, Rahube, Teddie, Martins, Andreza Francisco, Tagliati, Carlos Alberto, Souza, Larissa Camila Ribeiro de, Nzouankeu, Ariane, Rehman, Muhammad Attiq, Gauthier, Jeff ... Global Sewage Consortium (2025). Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes. Nature Communications, 16 (1) 10278, 1-12. doi: 10.1038/s41467-025-66070-7 |
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2025 Journal Article An ascorbic acid responsive nanoprobe for food shelf-life determination and plant growth assessmentTian, Dihua, Zhang, Zexi, Plavilathundil, Suzanne Mathews, Tian, Xinyang, Seididamyeh, Maral, Alanazi, Mazen, Phan, Anh, Wu, Miaomiao, Shi, Jiahua, Sultanbawa, Yasmina, Carroll, Bernard J. and Zhang, Run (2025). An ascorbic acid responsive nanoprobe for food shelf-life determination and plant growth assessment. Food Chemistry, 492 (Pt 1) 145347, 1-11. doi: 10.1016/j.foodchem.2025.145347 |
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2025 Journal Article Deep learning-driven protein-ligand binding affinity prediction: data, architecture, training and evaluationLi, Zhiwei, Zhou, Guoqiang, Li, Haoran, Mi, Jiacong, Shi, Jiahua and Shen, Jun (2025). Deep learning-driven protein-ligand binding affinity prediction: data, architecture, training and evaluation. IEEE Transactions on Computational Biology and Bioinformatics, 22 (6), 3419-3437. doi: 10.1109/tcbbio.2025.3627203 |
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2025 Journal Article Genome-wide identification of plant C2 domain-containing protein family and the role of OsNTMC2T2.2 under chilling stress in riceZhao, Liyan, Wang, Jingzhen, Zhou, Yuntao, Shi, Jiahua, Liu, Guoquan, Xie, Guosheng and Wang, Lingqiang (2025). Genome-wide identification of plant C2 domain-containing protein family and the role of OsNTMC2T2.2 under chilling stress in rice. Environmental and Experimental Botany, 237 106202, 1-18. doi: 10.1016/j.envexpbot.2025.106202 |
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2025 Conference Publication FedSC: federated learning with semantic-aware collaborationWang, Huan, Li, Haoran, Chen, Huaming, Yan, Jun, Shi, Jiahua and Shen, Jun (2025). FedSC: federated learning with semantic-aware collaboration. 31st International Conference on Knowledge Discovery and Data Mining-KDD, Toronto Canada, Aug 03-07, 2025. New York, NY, United States: ACM. doi: 10.1145/3711896.3736957 |
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2025 Conference Publication FedSKC: Federated Learning with Non-IID Data via Structural Knowledge CollaborationWang, Huan, Li, Haoran, Chen, Huaming, Yan, Jun, Wang, Lijuan, Shi, Jiahua, Chen, Shiping and Shen, Jun (2025). FedSKC: Federated Learning with Non-IID Data via Structural Knowledge Collaboration. 2025 IEEE International Conference on Web Services (ICWS), Helsinki, Finland, 7-12 July 2025. Piscataway, NJ United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/icws67624.2025.00093 |
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2025 Journal Article Rice-SVBDete: a detection algorithm for small vascular bundles in rice stem’s cross-sectionsZhu, Xiaoying, Zhou, Weiyu, Li, Jianguo, Yang, Mingchong, Zhou, Haiyu, Huang, Jiada, Shi, Jiahua, Shen, Jun, Pang, Guangyao and Wang, Lingqiang (2025). Rice-SVBDete: a detection algorithm for small vascular bundles in rice stem’s cross-sections. Frontiers in Plant Science, 16 1589161, 1589161. doi: 10.3389/fpls.2025.1589161 |
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2025 Conference Publication Vox-UDA: Voxel-wise Unsupervised Domain Adaptation for cryo-electron subtomogram segmentation with denoised pseudo-labelingLi, Haoran, Li, Xingjian, Shi, Jiahua, Chen, Huaming, Du, Bo, Kihara, Daisuke, Barthelemy, Johan, Shen, Jun and Xu, Min (2025). Vox-UDA: Voxel-wise Unsupervised Domain Adaptation for cryo-electron subtomogram segmentation with denoised pseudo-labeling. 39th AAAI Conference on Artificial Intelligence, Philadelphia, PA USA, 25 February-4 March 2025. Washington, DC USA: Association for the Advancement of Artificial Intelligence. doi: 10.1609/aaai.v39i1.32019 |
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2024 Journal Article Characterisation and quantification of phenolic, anthocyanidin and terpene species in plant foods and plant food-based complementary products with antioxidant and neuroprotective propertiesMay, Naomi, Shi, Jiahua, Clunas, Helen, de Sousa Alves Neri, Julianna Lys, Kelso, Celine, Morgan, Jody, Yu, Yinghua, Charlton, Karen and Weston-Green, Katrina (2024). Characterisation and quantification of phenolic, anthocyanidin and terpene species in plant foods and plant food-based complementary products with antioxidant and neuroprotective properties. Food and Function, 15 (23), 11537-11563. doi: 10.1039/d4fo02942a |
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2024 Conference Publication Transforming food waste into value: Industry innovations and sustainable solutions for a circular economyShi, Jiahua (2024). Transforming food waste into value: Industry innovations and sustainable solutions for a circular economy. DAF-QAAFI Food Science Seminar, Brisbane, QLD, Australia, 1 October 2024. |
