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2023 Conference Publication SpatialSort: a Bayesian model for clustering and cell population annotation of spatial proteomics dataLee, Eric, Chern, Kevin, Nissen, Michael, Wang, Xuehai, IMAXT Consortium, Huang, Chris, Gandhi, Anita K., Bouchard-Cote, Alexandre, Weng, Andrew P. and Roth, Andrew (2023). SpatialSort: a Bayesian model for clustering and cell population annotation of spatial proteomics data. 31st Annual conference on Intelligent Systems for Molecular Biology (ISMB)/22nd European Conference on Computational Biology (ECCB) (ISMB/ECCB), Lyon, France, 23-27 July 2023. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/bioinformatics/btad242 |
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2022 Journal Article Single-cell profiling reveals a memory B cell-like subtype of follicular lymphoma with increased transformation riskWang, Xuehai, Nissen, Michael, Gracias, Deanne, Kusakabe, Manabu, Simkin, Guillermo, Jiang, Aixiang, Duns, Gerben, Sarkozy, Clementine, Hilton, Laura, Chavez, Elizabeth A., Segat, Gabriela C., Wong, Rachel, Kim, Jubin, Aoki, Tomohiro, Islam, Rashedul, May, Christina, Hung, Stacy, Tyshchenko, Kate, Brinkman, Ryan R., Hirst, Martin, Karsan, Aly, Freeman, Ciara, Sehn, Laurie H., Morin, Ryan D., Roth, Andrew J., Savage, Kerry J., Craig, Jeffrey W., Shah, Sohrab P., Steidl, Christian ... Weng, Andrew P. (2022). Single-cell profiling reveals a memory B cell-like subtype of follicular lymphoma with increased transformation risk. Nature Communications, 13 (1) 6772. doi: 10.1038/s41467-022-34408-0 |
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2022 Journal Article Comprehensive immune profiling of patients with advanced urothelial or renal cell carcinoma receiving immune checkpoint blockadeLavoie, Jean-Michel, Baichoo, Priya, Chavez, Elizabeth, Nappi, Lucia, Khalaf, Daniel, Kollmannsberger, Christian K., Chi, Kim N., Weng, Andrew, Steidl, Christian, Eigl, Bernhard J. and Nissen, Michael (2022). Comprehensive immune profiling of patients with advanced urothelial or renal cell carcinoma receiving immune checkpoint blockade. Frontiers in Oncology, 12 973402. doi: 10.3389/fonc.2022.973402 |
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2020 Journal Article TBL1XR1 mutations drive extranodal lymphoma by inducing a pro-tumorigenic memory fateVenturutti, Leandro, Teater, Matt, Zhai, Andrew, Chadburn, Amy, Babiker, Leena, Kim, Daleum, Beguelin, Wendy, Lee, Tak C., Kim, Youngjun, Chin, Christopher R., Yewdell, William T., Raught, Brian, Phillip, Jude M., Jiang, Yanwen, Staudt, Louis M., Green, Michael R., Chaudhuri, Jayanta, Elemento, Olivier, Farinha, Pedro, Weng, Andrew P., Nissen, Michael D., Steidl, Christian, Morin, Ryan D., Scott, David W., Prive, Gilbert G. and Melnick, Ari M. (2020). TBL1XR1 mutations drive extranodal lymphoma by inducing a pro-tumorigenic memory fate. Cell, 182 (2), 297-316.e27. doi: 10.1016/j.cell.2020.05.049 |
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2020 Journal Article Single cell phenotypic profiling of 27 DLBCL cases reveals marked intertumoral and intratumoral heterogeneityNissen, Michael D., Kusakabe, Manabu, Wang, Xuehai, Simkin, Guillermo, Gracias, Deanne, Tyshchenko, Kateryna, Hill, Ainsleigh, Meskas, Justin, Hung, Stacy, Chavez, Elizabeth A., Ennishi, Daisuke, Aoki, Tomohiro, Sarkozy, Clementine, Connors, Joseph M., Farinha, Pedro, Slack, Graham W., Gascoyne, Randy D., Brinkman, Ryan R., Scott, David W., Steidl, Christian and Weng, Andrew P. (2020). Single cell phenotypic profiling of 27 DLBCL cases reveals marked intertumoral and intratumoral heterogeneity. Cytometry Part A, 97 (6), 620-629. doi: 10.1002/cyto.a.23919 |
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2020 Journal Article Single-cell transcriptome analysis reveals disease-defining T-cell subsets in the tumor microenvironment of classic Hodgkin lymphomaAoki, Tomohiro, Chong, Lauren C., Takata, Katsuyoshi, Milne, Katy, Hav, Monirath, Colombo, Anthony, Chavez, Elizabeth A., Nissen, Michael, Wang, Xuehai, Miyata-Takata, Tomoko, Lam, Vivian, Viganò, Elena, Woolcock, Bruce W., Telenius, Adèle, Li, Michael Y., Healy, Shannon, Ghesquiere, Chanel, Kos, Daniel, Goodyear, Talia, Veldman, Johanna, Zhang, Allen W., Kim, Jubin, Saberi, Saeed, Ding, Jiarui, Farinha, Pedro, Weng, Andrew P., Savage, Kerry J., Scott, David W., Krystal, Gerald ... Steidl, Christian (2020). Single-cell transcriptome analysis reveals disease-defining T-cell subsets in the tumor microenvironment of classic Hodgkin lymphoma. Cancer Discovery, 10 (3), 406-421. doi: 10.1158/2159-8290.cd-19-0680 |
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2019 Journal Article Genetic Meningococcal Antigen Typing System (gMATS): a genotyping tool that predicts 4CMenB strain coverage worldwideMuzzi, Alessandro, Brozzi, Alessandro, Serino, Laura, Bodini, Margherita, Abad, Raquel, Caugant, Dominique, Comanducci, Maurizio, Lemos, Ana Paula, Gorla, Maria Cecilia, Křížová, Pavla, Mikula, Claudia, Mulhall, Robert, Nissen, Michael, Nohynek, Hanna, Simões, Maria João, Skoczyńska, Anna, Stefanelli, Paola, Taha, Muhamed-Kheir, Toropainen, Maija, Tzanakaki, Georgina, Vadivelu-Pechai, Kumaran, Watson, Philip, Vazquez, Julio A., Rajam, Gowrisankar, Rappuoli, Rino, Borrow, Ray and Medini, Duccio (2019). Genetic Meningococcal Antigen Typing System (gMATS): a genotyping tool that predicts 4CMenB strain coverage worldwide. Vaccine, 37 (7), 991-1000. doi: 10.1016/j.vaccine.2018.12.061 |
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2018 Journal Article Beta-adrenergic signaling impairs anti-tumor CD8+ T cell responses to B cell lymphoma immunotherapyNissen, Michael D, Sloan, Erica K and Mattarollo, Stephen R (2018). Beta-adrenergic signaling impairs anti-tumor CD8+ T cell responses to B cell lymphoma immunotherapy. Cancer immunology research, 6 (1), 98-109. doi: 10.1158/2326-6066.CIR-17-0401 |
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2018 Journal Article B cell lymphoma progression promotes the accumulation of circulating Ly6Clo monocytes with immunosuppressive activityMcKee, Sara J., Tuong, Zewen K., Kobayashi, Takumi, Doff, Brianna L., Soon, Megan S. F ., Nissen, Michael, Lam, Pui Yeng, Keane, Colm, Vari, Frank, Moi, Davide, Mazzieri, Roberta, Leggatt, Graham, Gandhi, Maher K. and Mattarollo, Stephen R. (2018). B cell lymphoma progression promotes the accumulation of circulating Ly6Clo monocytes with immunosuppressive activity. OncoImmunology, 7 (2) e1393599, e1393599. doi: 10.1080/2162402X.2017.1393599 |
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2017 Journal Article Detection of Toscana virus from an adult traveler returning to Australia with encephalitisArden, Katherine E., Heney, Claire, Shaban, Babak, Nimmo, Graeme R., Nissen, Michael D., Sloots, Theo P. and Mackay, Ian M. (2017). Detection of Toscana virus from an adult traveler returning to Australia with encephalitis. Journal of Medical Virology, 89 (10), 1861-1864. doi: 10.1002/jmv.24839 |
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2017 Journal Article Influenza vaccine efficacy in young children attending childcare: a randomised controlled trialLi-Kim-Moy, Jean P., Yin, Jiehui K., Heron, Leon, Leask, Julie, Lambert, Stephen B., Nissen, Michael, Sloots, Theo and Booy, Robert (2017). Influenza vaccine efficacy in young children attending childcare: a randomised controlled trial. Journal of Paediatrics and Child Health, 53 (1), 47-54. doi: 10.1111/jpc.13313 |
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2016 Journal Article A difficult decision: atypical JC polyomavirus encephalopathy in a kidney transplant recipientBialasiewicz, Seweryn, Hart, Gareth, Oliver, Kimberly, Agnihotri, Shruti P., Koralnik, Igor J., Viscidi, Raphael, Nissen, Michael D., Sloots, Theo P., Burke, Michael T., Isbel, Nicole M. and Burke, John (2016). A difficult decision: atypical JC polyomavirus encephalopathy in a kidney transplant recipient. Transplantation, 101 (6), 1461-1467. doi: 10.1097/TP.0000000000001275 |
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2016 Journal Article Parechovirus encephalitis and neurodevelopmental outcomesBritton, Philip N., Dale, Russell C., Nissen, Michael D., Crawford, Nigel, Elliott, Elizabeth, Macartney, Kristine, Khandaker, Gulam, Booy, Robert and Jones, Cheryl A. (2016). Parechovirus encephalitis and neurodevelopmental outcomes. Pediatrics, 137 (2) e20152848, e20152848. doi: 10.1542/peds.2015-2848 |
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2016 Book Chapter Human polyomavirusesRockett, Rebecca J., Nissen, Michael D., Sloots, Theo P. and Bialasiewicz, Seweryn (2016). Human polyomaviruses. Clinical Virology Manual. (pp. 427-442) edited by Michael J. Loeffelholz, Richard L. Hodinka, Stephen A. Young and Benjamin A. Pinsky. Washington DC, United States: American Society for Microbiology (ASM). doi: 10.1128/9781555819156 |
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2016 Conference Publication The effects of chronic psychological stress on the immune response to lymphomaNissen, M., Sloan, E. and Mattarollo, S. (2016). The effects of chronic psychological stress on the immune response to lymphoma. International Congress of Immunology (ICI), Melbourne, VIC, Australia, 21-26 August 2016. Weinheim, Germany: Wiley - VCH. doi: 10.1002/eji.201670200 |
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2015 Journal Article Group a streptococcal carriage and seroepidemiology in children up to 10 years of age in AustraliaMarshall, Helen S., Richmond, Peter, Nissen, Michael, Lambert, Stephen, Booy, Robert, Reynolds, Graham, Sebastian, Shite, Pride, Michael, Jansen, Kathrin U., Anderson, Annaliesa S. and Scully, Ingrid L. (2015). Group a streptococcal carriage and seroepidemiology in children up to 10 years of age in Australia. Pediatric Infectious Disease Journal, 34 (8), 831-838. doi: 10.1097/INF.0000000000000745 |
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2015 Journal Article Estimating the prevalence of mixed-type gonococcal infections in Queensland, AustraliaTrembizki, Ella, Doyle, Christine, Buckley, Cameron, Jennison, Amy, Smith, Helen, Bates, John, Sloots, Theo, Nissen, Michael, Lahra, Monica M. and Whiley, David (2015). Estimating the prevalence of mixed-type gonococcal infections in Queensland, Australia. Sexual Health, 12 (5), 439-444. doi: 10.1071/SH15009 |
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2013 Conference Publication WU, KI, MW and MCV polyomavirus infection in the first 2 years of lifeRockett, Rebecca, Bialasiewicz, Seweryn, Lambert, Stephen B., Ware, Robert, Whiley, David M., Nissen, Michael D., Grimwood, Keith and Sloots, Theo P. (2013). WU, KI, MW and MCV polyomavirus infection in the first 2 years of life. 5th International Conference on Polyomaviruses and Human Diseases: Basic and Clinical Perspectives, Stresa Italy, 09-11 May 2013. New York, NY United States: Springer New York LLC. |
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2013 Conference Publication Systemic lymphopenia results in loss of suppressive lymphocytes from precancerous skinLeggatt, Graham, Mattarollo, Stephen, Yong, Michelle, Nissen, Michael and Frazer, Ian (2013). Systemic lymphopenia results in loss of suppressive lymphocytes from precancerous skin. 100th Annual Meeting of the American Association of Immunologists, Honolulu, Hawaii, 03-07 May 2013. Bethesda, MD United States: American Association of Immunologists. |
