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2024 Journal Article Host gene expression signatures to identify infection type and organ dysfunction in children evaluated for sepsis: a multicentre cohort studySchlapbach, Luregn J., Ganesamoorthy, Devika, Wilson, Clare, Raman, Sainath, George, Shane, Snelling, Peter J., Phillips, Natalie, Irwin, Adam, Sharp, Natalie, Le Marsney, Renate, Chavan, Arjun, Hempenstall, Allison, Bialasiewicz, Seweryn, MacDonald, Anna D., Grimwood, Keith, Cling, Jessica C., McPherson, Stephen J., Blumenthal, Antje, Kaforou, Myrsini, Levin, Michael, Herberg, Jethro A., Gibbons, Kristen S., Coin, Lachlan J. M., EUCLIDS consortium and RAPIDS Study Group (2024). Host gene expression signatures to identify infection type and organ dysfunction in children evaluated for sepsis: a multicentre cohort study. The Lancet Child and Adolescent Health, 8 (5), 325-338. doi: 10.1016/S2352-4642(24)00017-8 |
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2024 Journal Article Correction: Achievement of therapeutic antibiotic exposures using Bayesian dosing software in critically unwell children and adults with sepsisChai, Ming G., Tu, Quyen, Cotta, Menino O., Bauer, Michelle J., Balch, Ross, Okafor, Charles, Comans, Tracy, Kruger, Peter, Meyer, Jason, Shekar, Kiran, Brady, Kara, Fourie, Cheryl, Sharp, Natalie, Vlad, Luminita, Whiley, David, Ungerer, Jacobus P. J., Mcwhinney, Brett C., Farkas, Andras, Paterson, David L., Clark, Julia E., Hajkowicz, Krispin, Raman, Sainath, Bialasiewicz, Seweryn, Lipman, Jeffrey, Forde, Brian M., Harris, Patrick N. A., Schlapbach, Luregn J., Coin, Lachlan, Roberts, Jason A. and Irwin, Adam D. (2024). Correction: Achievement of therapeutic antibiotic exposures using Bayesian dosing software in critically unwell children and adults with sepsis. Intensive Care Medicine, 50 (5), 810-810. doi: 10.1007/s00134-024-07393-9 |
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2024 Journal Article Achievement of therapeutic antibiotic exposures using Bayesian dosing software in critically unwell children and adults with sepsisChai, Gene G., Tu, Quyen, Cotta, Menino O., Bauer, Michelle J., Balch, Ross, Okafor, Charles, Comans, Tracy, Kruger, Peter, Meyer, Jason, Shekar, Kiran, Brady, Kara, Fourie, Cheryl, Sharp, Natalie, Vlad, Luminita, Whiley, David, Ungerer, Jacobus P. J., McWhinney, Brett C., Farkas, Andras, Paterson, David L., Clark, Julia E., Hajkowicz, Krispin, Raman, Sainath, Bialasiewicz, Seweryn, Lipman, Jeffrey, Forde, Brian M., Harris, Patrick N. A., Schlapbach, Luregn J., Coin, Lachlan, Roberts, Jason A. and Irwin, Adam D. (2024). Achievement of therapeutic antibiotic exposures using Bayesian dosing software in critically unwell children and adults with sepsis. Intensive Care Medicine, 50 (4), 1-9. doi: 10.1007/s00134-024-07353-3 |
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2024 Journal Article Rapid nanopore sequencing and predictive susceptibility testing of positive blood cultures from intensive care patients with sepsisHarris, Patrick N. A., Bauer, Michelle J., Lüftinger, Lukas, Beisken, Stephan, Forde, Brian M., Balch, Ross, Cotta, Menino, Schlapbach, Luregn, Raman, Sainath, Shekar, Kiran, Kruger, Peter, Lipman, Jeff, Bialasiewicz, Seweryn, Coin, Lachlan, Roberts, Jason A., Paterson, David L. and Irwin, Adam D. (2024). Rapid nanopore sequencing and predictive susceptibility testing of positive blood cultures from intensive care patients with sepsis. Microbiology spectrum, 12 (2) e0306523, e0306523. doi: 10.1128/spectrum.03065-23 |
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2024 Journal Article The respiratory microbiome in paediatric chronic wet cough: what is known and future directionsAtto, Brianna, Anteneh, Yitayal, Bialasiewicz, Seweryn, Binks, Michael J., Hashemi, Mostafa, Hill, Jane, Thornton, Ruth B., Westaway, Jacob and Marsh, Robyn L. (2024). The respiratory microbiome in paediatric chronic wet cough: what is known and future directions. Journal of Clinical Medicine, 13 (1) 171. doi: 10.3390/jcm13010171 |
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2023 Journal Article ISOM 2023 research Panel 4 - diagnostics and microbiology of otitis mediaTamir, Sharon Ovnat, Bialasiewicz, Seweryn, Brennan-Jones, Christopher G., Der, Carolina, Kariv, Liron, Macharia, Ian, Marsh, Robyn L., Seguya, Amina and Thornton, Ruth (2023). ISOM 2023 research Panel 4 - diagnostics and microbiology of otitis media. International Journal of Pediatric Otorhinolaryngology, 174 111741, 1-13. doi: 10.1016/j.ijporl.2023.111741 |
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2023 Journal Article HPeV3 diversity, recombination and clinical impact across 7-years: an Australian storyBialasiewicz, Seweryn, May, Meryta, Tozer, Sarah, Day, Rebecca, Bernard, Anne, Zaugg, Julian, Gartrell, Kyana, Alexandersen, Soren, Chamings, Anthony, Wang, Claire Y. T., Clark, Julia, Grimwood, Keith, Heney, Claire, Schlapbach, Luregn, Ware, Robert S., Speers, David, Andrews, Ross M. and Lambert, Stephen (2023). HPeV3 diversity, recombination and clinical impact across 7-years: an Australian story. The Journal of Infectious Diseases, 227 (2), 278-287. doi: 10.1093/infdis/jiac311 |
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2022 Journal Article Viral presence and the bacterial microbiome in chronic rhinosinusitisGoggin, Rachel K., Bennett, Catherine A., Cooksley, Clare M., Bassiouni, Ahmed, Bialasiewicz, Seweryn, Wormald, Peter-John, Vreugde, Sarah and Psaltis, Alkis J. (2022). Viral presence and the bacterial microbiome in chronic rhinosinusitis. Australian Journal of Otolaryngology, 5 11, 1-9. doi: 10.21037/AJO-21-53 |
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2022 Journal Article In vitro Inhibition of respiratory pathogens by lactobacillus and alpha haemolytic streptococci from Aboriginal and Torres Strait Islander childrenColeman, Andrea, Håkansson, Alexander, Grahn Håkansson, Eva, Cottrell, Kyra, Bialasiewicz, Seweryn, Zaugg, Julian and Cervin, Anders (2022). In vitro Inhibition of respiratory pathogens by lactobacillus and alpha haemolytic streptococci from Aboriginal and Torres Strait Islander children. Journal of Applied Microbiology, 132 (3), 2368-2378. doi: 10.1111/jam.15320 |
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2022 Journal Article Changes in the skin microbiome associated with squamous cell carcinoma in transplant recipientsKrueger, Annika, Zaugg, Julian, Lachner, Nancy, Bialasiewicz, Seweryn, Lin, Lynlee L., Gabizon, Sharon, Sobarun, Priyamvada, Morrison, Mark, Soyer, H. Peter, Hugenholtz, Philip and Frazer, Ian H. (2022). Changes in the skin microbiome associated with squamous cell carcinoma in transplant recipients. ISME Communications, 2 (1) 13, 13. doi: 10.1038/s43705-022-00095-7 |
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2022 Journal Article Potentially Pathogenic Organisms in Stools and Their Association With Acute Diarrheal Illness in Children Aged <2 YearsMihala, Gabor, Ware, Robert S., Lambert, Stephen B., Bialasiewicz, Seweryn, Whiley, David M., Sarna, Mohinder, Sloots, Theo P., Nissen, Michael D. and Grimwood, Keith (2022). Potentially Pathogenic Organisms in Stools and Their Association With Acute Diarrheal Illness in Children Aged <2 Years. Journal of the Pediatric Infectious Diseases Society, 11 (5), 199-206. doi: 10.1093/jpids/piab130 |
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2021 Journal Article Upper respiratory tract microbiome of Australian Aboriginal and Torres Strait Islander children in ear and nose health and diseaseColeman, Andrea, Zaugg, Julian, Wood, Amanda, Cottrell, Kyra, Håkansson, Eva Grahn, Adams, Jasmyn, Brown, Matthew, Cervin, Anders and Bialasiewicz, Seweryn (2021). Upper respiratory tract microbiome of Australian Aboriginal and Torres Strait Islander children in ear and nose health and disease. Microbiology Spectrum, 9 (2) e00367-21, e0036721. doi: 10.1128/spectrum.00367-21 |
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2021 Journal Article Optimising treatment outcomes for children and adults through rapid genome sequencing of sepsis pathogens. A study protocol for a prospective, multi-centre trial (DIRECT)Irwin, Adam D., Coin, Lachlan J. M., Harris, Patrick N. A., Cotta, Menino Osbert, Bauer, Michelle J., Buckley, Cameron, Balch, Ross, Kruger, Peter, Meyer, Jason, Shekar, Kiran, Brady, Kara, Fourie, Cheryl, Sharp, Natalie, Vlad, Luminita, Whiley, David, Beatson, Scott A., Forde, Brian M., Paterson, David, Clark, Julia, Hajkowicz, Krispin, Raman, Sainath, Bialasiewicz, Seweryn, Lipman, Jeffrey, Schlapbach, Luregn J. and Roberts, Jason A. (2021). Optimising treatment outcomes for children and adults through rapid genome sequencing of sepsis pathogens. A study protocol for a prospective, multi-centre trial (DIRECT). Frontiers in Cellular and Infection Microbiology, 11 667680, 1-8. doi: 10.3389/fcimb.2021.667680 |
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2021 Journal Article Where have all the viruses gone? Disappearance of seasonal respiratory viruses during the COVID‐19 pandemicTang, Julian W., Bialasiewicz, Seweryn, Dwyer, Dominic E., Dilcher, Meik, Tellier, Raymond, Taylor, Janette, Hua, Harry, Jennings, Lance, Kok, Jen, Levy, Avram, Smith, David, Barr, Ian G. and Sullivan, Sheena G. (2021). Where have all the viruses gone? Disappearance of seasonal respiratory viruses during the COVID‐19 pandemic. Journal of Medical Virology, 93 (7) jmv.26964, 4099-4101. doi: 10.1002/jmv.26964 |
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2021 Journal Article Upper respiratory microbiota in relation to ear and nose health among Australian Aboriginal and Torres Strait Islander childrenColeman, Andrea, Bialasiewicz, Seweryn, Marsh, Robyn L., Grahn Håkansson, Eva, Cottrell, Kyra, Wood, Amanda, Jayasundara, Nadeesha, Ware, Robert S., Zaugg, Julian, Sidjabat, Hanna E., Adams, Jasmyn, Ferguson, Josephine, Brown, Matthew, Roos, Kristian and Cervin, Anders (2021). Upper respiratory microbiota in relation to ear and nose health among Australian Aboriginal and Torres Strait Islander children. Journal of the Pediatric Infectious Diseases Society, 10 (4), 468-476. doi: 10.1093/jpids/piaa141 |
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2020 Journal Article Association between viral infection and increased mucosal eosinophils and CD8+CD103+ T cells in chronic rhinosinusitisGoggin, Rachel K., Bennett, Catherine A., Ramezanpour, Mahnaz, Hu, Hua, Fenix, Kevin, Bassiouni, Ahmed, Javadiyan, Shari, Bialasiewicz, Seweryn, Wormald, Peter-John, Psaltis, Alkis J. and Vreugde, Sarah (2020). Association between viral infection and increased mucosal eosinophils and CD8+CD103+ T cells in chronic rhinosinusitis. International Forum of Allergy and Rhinology, 10 (8) alr.22564, 978-980. doi: 10.1002/alr.22564 |
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2020 Journal Article Recent advances in understanding the natural history of the otitis media microbiome and its response to environmental pressuresMarsh, Robyn L., Aho, Celestine, Beissbarth, Jemima, Bialasiewicz, Seweryn, Binks, Michael, Cervin, Anders, Kirkham, Lea-Ann S., Lemon, Katherine P., Slack, Mary P.E. and Smith-Vaughan, Heidi C. (2020). Recent advances in understanding the natural history of the otitis media microbiome and its response to environmental pressures. International Journal of Pediatric Otorhinolaryngology, 130 (Supp. 1) 109836, 109836. doi: 10.1016/j.ijporl.2019.109836 |
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2019 Journal Article Polymerase chain reaction for human parechovirus on blood samples improves detection of clinical infections in infantsMay, M. L. A., Tozer, S., Day, R., Doyle, R., Bernard, A., Schlapbach, L. J., Heney, C., Clark, J. E. and Bialasiewicz, S. (2019). Polymerase chain reaction for human parechovirus on blood samples improves detection of clinical infections in infants. Molecular Biology Reports, 47 (1), 715-720. doi: 10.1007/s11033-019-05151-5 |
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2019 Journal Article Association between meteorological variations and activities of influenza A and B across different climate zones: a multi-region modelling analysis across the globeChong, Ka Chun, Lee, Tsz Cheung, Bialasiewicz, Seweryn, Chen, Jian, Smith, David W., Choy, Wisely S. C., Krajden, Mel, Jalal, Hamid, Jennings, Lance, Alexander, Burmaa, Lee, Hong Kai, Fraaij, Pieter, Levy, Avram, Yeung, Apple C. M., Tozer, Sarah, Lau, Steven Y. F., Jia, Katherine M., Tang, Julian W. T., Hui, David S. C. and Chan, Paul K. S. (2019). Association between meteorological variations and activities of influenza A and B across different climate zones: a multi-region modelling analysis across the globe. Journal of Infection, 80 (1), 84-98. doi: 10.1016/j.jinf.2019.09.013 |
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2019 Journal Article Comparative global epidemiology of influenza, respiratory syncytial and parainfluenza viruses, 2010–2015Lam, Tommy T., Tang, Julian W., Lai, Florence Y., Zaraket, Hassan, Dbaibo, Ghassan, Bialasiewicz, Seweryn, Tozer, Sarah, Heraud, Jean-Michel, Drews, Steven J., Hachette, Todd, Chan, Paul K.S., Koay, Evelyn S.C., Lee, Hong Kai, Tee, Kok Keng, Liu, Yang, Fraaij, Pieter L.A., Jennings, Lance, Waris, Matti, Krajden, Mel, Corriveau, André, Jalal, Hamid, Nishimura, Hidekazu, Nymadawa, Pagbajabyn, Badarch, Darmaa, Watanabe, Aripuana, Kabanda, Alice, Sloots, Theo, Kok, Jen, Dwyer, Dominic E. and Koopmans, Marion (2019). Comparative global epidemiology of influenza, respiratory syncytial and parainfluenza viruses, 2010–2015. Journal of Infection, 79 (4), 373-382. doi: 10.1016/j.jinf.2019.07.008 |
