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2025 Journal Article Do transformers generalise better than bespoke tools for anonymisation?Klapaukh, Roman, El-Hayek, Carol and Boyle, Douglas IR (2025). Do transformers generalise better than bespoke tools for anonymisation?. Informatics in Medicine Unlocked, 52 101607. doi: 10.1016/j.imu.2024.101607 |
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2024 Journal Article Phenotyping people with a history of injecting drug use within electronic medical records using an interactive machine learning approachEl-Hayek, Carol, Nguyen, Thi, Hellard, Margaret E., Curtis, Michael, Sacks-Davis, Rachel, Aung, Htein Linn, Asselin, Jason, Boyle, Douglas I. R., Wilkinson, Anna, Polkinghorne, Victoria, Hocking, Jane S. and Dunn, Adam G. (2024). Phenotyping people with a history of injecting drug use within electronic medical records using an interactive machine learning approach. npj Digital Medicine, 7 (1) 346, 346. doi: 10.1038/s41746-024-01318-y |
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2024 Conference Publication Risk of hepatitis C infection following bacterial sexually transmissible infections among gay and bisexual men in Australia 2016-2020Harney, Brendan L., Agius, Paul, Asselin, Jason, Bloch, Mark, Donovan, Basil, Doyle, Joseph, El-Hayek, Carol, Fairley, Christopher K., Guy, Rebecca, Hellard, Margaret, Matthews, Gail, Roth, Norman, Sacks-Davis, Rachel, Stoove, Mark, Traeger, Michael, van Santen, Daniela K. and Wilkinson, Anna (2024). Risk of hepatitis C infection following bacterial sexually transmissible infections among gay and bisexual men in Australia 2016-2020. Annual Meeting of the Infectious-Diseases-Society-for-Obstetrics-and-Gynecology (IDSOG), Boston Ma, Aug 04-06, 2022. PHILADELPHIA: LIPPINCOTT WILLIAMS & WILKINS. |
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2023 Journal Article An evaluation of existing text de-identification tools for use with patient progress notes from Australian general practiceEl-Hayek, Carol, Barzegar, Siamak, Faux, Noel, Doyle, Kim, Pillai, Priyanka, Mutch, Simon J., Vaisey, Alaina, Ward, Roger, Sanci, Lena, Dunn, Adam G., Hellard, Margaret E., Hocking, Jane S., Verspoor, Karin and Boyle, Douglas I. R. (2023). An evaluation of existing text de-identification tools for use with patient progress notes from Australian general practice. International Journal of Medical Informatics, 173 105021. doi: 10.1016/j.ijmedinf.2023.105021 |
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2022 Journal Article The incidence of hepatitis C among gay, bisexual, and other men who have sex with men in Australia, 2009-2019Harney, Brendan L., Sacks-Davis, Rachel, van Santen, Daniela K., Traeger, Michael, Wilkinson, Anna L., Asselin, Jason, El-Hayek, Carol, Fairley, Christopher K., Roth, Norman, Bloch, Mark, Matthews, Gail, Donovan, Basil, Guy, Rebecca, Stoove, Mark, Hellard, Margaret E. and Doyle, Joseph S. (2022). The incidence of hepatitis C among gay, bisexual, and other men who have sex with men in Australia, 2009-2019. Clinical Infectious Diseases, 74 (10), 1804-1811. doi: 10.1093/cid/ciab720 |
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2022 Journal Article Hepatitis C incidence among patients attending primary care health services that specialise in the care of people who inject drugs, Victoria, Australia, 2009 to 2020Wilkinson, Anna Lee, van Santen, Daniela K., Traeger, Michael W., Sacks-Davis, Rachel, Asselin, Jason, Scott, Nick, Harney, Brendan L., Doyle, Joseph S., El-Hayek, Carol, Howell, Jessica, Bramwell, Fran, McManus, Hamish, Donovan, Basil, Stoove, Mark, Hellard, Margaret and Pedrana, Alisa (2022). Hepatitis C incidence among patients attending primary care health services that specialise in the care of people who inject drugs, Victoria, Australia, 2009 to 2020. International Journal of Drug Policy, 103 103655. doi: 10.1016/j.drugpo.2022.103655 |
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2022 Journal Article Real-world monitoring progress towards the elimination of hepatitis C virus in Australia using sentinel surveillance of primary care clinics; an ecological study of hepatitis C virus antibody tests from 2009 to 2019 (vol 150, E7, 2022)Lee Wilkinson, Anna, Pedrana, Alisa, Traeger, Michael W., Asselin, Jason, El-Hayek, Carol, Nguyen, Long, Polkinghorne, Victoria, Doyle, Joseph S., Thompson, Alexander J., Howell, Jessica, Scott, Nick, Dimech, Wayne, Guy, Rebecca, Hellard, Margaret and Stoove, Mark (2022). Real-world monitoring progress towards the elimination of hepatitis C virus in Australia using sentinel surveillance of primary care clinics; an ecological study of hepatitis C virus antibody tests from 2009 to 2019 (vol 150, E7, 2022). Epidemiology and Infection, 150 e44. doi: 10.1017/S0950268822000310 |
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2022 Conference Publication Evaluating the performance of existing automated text de-identification tools on patient progress notes from Australian general practiceEl-Hayek, Carol, Barzegar, Siamak, Faux, Noel, Doyle, Kim, Pillai, Priyanka, Mutch, Simon, Vaisey, Alaina, Ward, Roger, Sanci, Lena, Hocking, Jane, Verspoor, Karin and Boyle, Douglas (2022). Evaluating the performance of existing automated text de-identification tools on patient progress notes from Australian general practice. CLAYTON: CSIRO PUBLISHING. |
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2021 Journal Article Real-world monitoring progress towards the elimination of hepatitis C virus in Australia using sentinel surveillance of primary care clinics; an ecological study of hepatitis C virus antibody tests from 2009 to 2019Wilkinson, Anna Lee, Pedrana, Alisa, Traeger, Michael W., Asselin, Jason, El-Hayek, Carol, Nguyen, Long, Polkinghorne, Victoria, Doyle, Joseph S., Thompson, Alexander J., Howell, Jessica, Scott, Nick, Dimech, Wayne, Guy, Rebecca and Hellard, Margaret (2021). Real-world monitoring progress towards the elimination of hepatitis C virus in Australia using sentinel surveillance of primary care clinics; an ecological study of hepatitis C virus antibody tests from 2009 to 2019. Epidemiology and Infection, 150 e7. doi: 10.1017/S0950268821002624 |
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2021 Journal Article Microelimination of hepatitis C among people with human immunodeficiency virus coinfection: declining incidence and prevalence accompanying a multicenter treatment scale-up trialDoyle, Joseph S., van Santen, Daniela K., Iser, David, Sasadeusz, Joe, O'Reilly, Mark, Harney, Brendan, Traeger, Michael W., Roney, Janine, Cutts, Julia C., Bowring, Anna L., Winter, Rebecca, Medland, Nick, Fairley, Christopher K., Moore, Richard, Tee, B. K., Asselin, Jason, El-Hayek, Carol, Hoy, Jennifer F., Matthews, Gail, Prins, Maria, Stoove, Mark A. and Hellard, Margaret E. (2021). Microelimination of hepatitis C among people with human immunodeficiency virus coinfection: declining incidence and prevalence accompanying a multicenter treatment scale-up trial. Clinical Infectious Diseases, 73 (7), E2164-E2171. doi: 10.1093/cid/ciaa1500 |
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2021 Journal Article Improvements in transition times through the HIV cascade of care among gay and bisexual men with a new HIV diagnosis in New South Wales and Victoria, Australia (2012-19): a longitudinal cohort studySanten, Daniela K. van, Asselin, Jasan, Haber, Noah A., Traeger, Michael W., Callander, Denton, Donovan, Basil, El-Hayek, Carol, McMahon, James H., Petoumenos, Kathy, McManus, Hamish, Hoy, Jennifer F., Hellard, Margaret, Guy, Rebecca and Stoove, Mark (2021). Improvements in transition times through the HIV cascade of care among gay and bisexual men with a new HIV diagnosis in New South Wales and Victoria, Australia (2012-19): a longitudinal cohort study. Lancet HIV, 8 (10), E623-E632. doi: 10.1016/S2352-3018(21)00155-7 |
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2021 Conference Publication Trends in incidence of bacterial sexually transmitted infections among gay and bisexual men using PrEP in AustraliaTraeger, M., Asselin, J., El-Hayek, C., Dittmer, J., Wright, E., Carter, A., Vickers, T., Patel, P., Fairley, C., Donovan, B., Guy, R., Hellard, M. and Stoove, M. (2021). Trends in incidence of bacterial sexually transmitted infections among gay and bisexual men using PrEP in Australia. CHICHESTER: JOHN WILEY & SONS LTD. |
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2020 Journal Article Improved capture of trans and gender-diverse people diagnosed with HIV infection in Victoria following refinement to notification formRyan, K. E., Wiggins, J., Higgins, N., El-Hayek, C. and Stoove, M. (2020). Improved capture of trans and gender-diverse people diagnosed with HIV infection in Victoria following refinement to notification form. Hiv Medicine, 21 (10), E23-E24. doi: 10.1111/hiv.12915 |
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2020 Journal Article Phylogenetic clustering networks among heterosexual migrants with new HIV diagnoses post-migration in AustraliaSacks-Davis, Rachel, Chibo, Doris, Peach, Elizabeth, Aleksic, Eman, Crowe, Suzanne M., El Hayek, Carol, Marukutira, Tafireyi, Higgins, Nasra, Stoove, Mark and Hellard, Margaret (2020). Phylogenetic clustering networks among heterosexual migrants with new HIV diagnoses post-migration in Australia. PLoS One, 15 (9) e0237469, 1-15. doi: 10.1371/journal.pone.0237469 |
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2020 Conference Publication Changes in the hepatitis C cascade of care among individuals attending primary and community health services before and after the introduction of direct-acting antiviral treatment in AustraliaTraeger, Michael, Pedrana, Alisa, van Santen, Daniela, Doyle, Joseph, Howell, Jess, Thompson, Alexander, El-Hayek, Carol, Asselin, Jason, Polkinghorne, Victoria, Membrey, Dean, Bramwell, Frances, Carter, Allison, Guy, Rebecca, Stoove, Mark and Hellard, Margaret (2020). Changes in the hepatitis C cascade of care among individuals attending primary and community health services before and after the introduction of direct-acting antiviral treatment in Australia. AMSTERDAM: ELSEVIER. |
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2020 Journal Article The impact of universal access to direct-acting antiviral therapy on the hepatitis C cascade of care among individuals attending primary and community health servicesTraeger, Michael W., Pedrana, Alisa E., van Santen, Daniela K., Doyle, Joseph S., Howell, Jessica, Thompson, Alexander J., El-Hayek, Carol, Asselin, Jason, Polkinghorne, Victoria, Membrey, Dean, Bramwell, Fran, Carter, Allison, Guy, Rebecca, Stoove, Mark A. and Hellard, Margaret E. (2020). The impact of universal access to direct-acting antiviral therapy on the hepatitis C cascade of care among individuals attending primary and community health services. PLoS One, 15 (6) e0235445, 1-13. doi: 10.1371/journal.pone.0235445 |
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2020 Journal Article Privacy-preserving record linkage of deidentified records within a public health surveillance system: evaluation studyNguyen, Long, Stoove, Mark, Boyle, Douglas, Callander, Denton, McManus, Hamish, Asselin, Jason, Guy, Rebecca, Donovan, Basil, Hellard, Margaret and El-Hayek, Carol (2020). Privacy-preserving record linkage of deidentified records within a public health surveillance system: evaluation study. Journal of Medical Internet Research, 22 (6) e16757, 1-12. doi: 10.2196/16757 |
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2020 Journal Article Comparing sexual behaviours and knowledge between domestic students and Chinese international students in Australia: findings from two cross-sectional studiesDouglass, Caitlin H., Qin, Can, Martin, Fran, Xiao, Yinzong, El-Hayek, Carol and Lim, Megan S. C. (2020). Comparing sexual behaviours and knowledge between domestic students and Chinese international students in Australia: findings from two cross-sectional studies. International Journal of STD and AIDS, 31 (8), 781-790. doi: 10.1177/0956462420921726 |
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2020 Journal Article Gaps in the HIV diagnosis and care cascade for migrants in Australia, 2013-2017: a cross-sectional studyMarukutira, Tafireyi, Gray, Richard T., Douglass, Caitlin, El-Hayek, Carol, Moreira, Clarissa, Asselin, Jason, Donovan, Basil, Vickers, Tobias, Spelman, Tim, Crowe, Suzanne, Guy, Rebecca, Stoove, Mark and Hellard, Margaret (2020). Gaps in the HIV diagnosis and care cascade for migrants in Australia, 2013-2017: a cross-sectional study. PLoS Medicine, 17 (3) e1003044, 1-15. doi: 10.1371/journal.pmed.1003044 |
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2020 Conference Publication HIV-1 EPIDEMIOLOGY AND SUBTYPE DIVERSITY IN THE AUSTRALIAN-BORN AND NEWLY-ARRIVED ASIAN-BORN MSM POPULATIONS IN VICTORIA, AUSTRALIA 2015-2018Coutts, S., Higgins, N., Chibo, D., D'Costa, J., Stoove, M., Hellard, M. and El-Hayek, C. (2020). HIV-1 EPIDEMIOLOGY AND SUBTYPE DIVERSITY IN THE AUSTRALIAN-BORN AND NEWLY-ARRIVED ASIAN-BORN MSM POPULATIONS IN VICTORIA, AUSTRALIA 2015-2018. CLAYTON: CSIRO PUBLISHING. |
