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2026 Journal Article Transformers as a substrate for structural biologyMalik, Ashar J., Portelli, Stephanie and Ascher, David B. (2026). Transformers as a substrate for structural biology. Current Opinion in Structural Biology, 97 103218, 1-9. doi: 10.1016/j.sbi.2025.103218 |
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2026 Journal Article mCSM-metal: A Deep Learning Resource to Predict Effect of Mutations on Metal Ion BindingKumar, Akshita, Malik, Ashar J. and Ascher, David B. (2026). mCSM-metal: A Deep Learning Resource to Predict Effect of Mutations on Metal Ion Binding. Journal of Molecular Biology 169678, 169678. doi: 10.1016/j.jmb.2026.169678 |
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2026 Journal Article Structome-AlignViewer: On Confidence Assessment in Structure-Aware AlignmentsMalik, Ashar J., Mao, Siying, Hugenholtz, Philip and Ascher, David B. (2026). Structome-AlignViewer: On Confidence Assessment in Structure-Aware Alignments. Genome Biology and Evolution, 18 (1) evag004, 1-8. doi: 10.1093/gbe/evag004 |
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2025 Journal Article Protein structural phylogeneticsPuente-Lelievre, Caroline, Malik, Ashar and Douglas, Jordan (2025). Protein structural phylogenetics. Genome Biology and Evolution, 17 (8) evaf139, 1-20. doi: 10.1093/gbe/evaf139 |
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2023 Journal Article Structome: a tool for the rapid assembly of datasets for structural phylogeneticsMalik, Ashar J., Langer, Desiree, Verma, Chandra S., Poole, Anthony M. and Allison, Jane R. (2023). Structome: a tool for the rapid assembly of datasets for structural phylogenetics. Bioinformatics Advances, 3 (1) vbad134, vbad134. doi: 10.1093/bioadv/vbad134 |
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2020 Journal Article Erratum: DStabilize: A Web Resource to Generate Mirror Images of Biomolecules (Structure (2020) 28(12) (1358–1360.e2), (S0969212620302471), (10.1016/j.str.2020.07.014))Malik, Ashar J., Aronica, Pietro G.A. and Verma, Chandra S. (2020). Erratum: DStabilize: A Web Resource to Generate Mirror Images of Biomolecules (Structure (2020) 28(12) (1358–1360.e2), (S0969212620302471), (10.1016/j.str.2020.07.014)). Structure, 28 (12), 1376-1378. doi: 10.1016/j.str.2020.11.010 |
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2020 Journal Article DStabilize: a web resource to generate mirror images of biomoleculesMalik, Ashar J., Aronica, Pietro G.A. and Verma, Chandra S. (2020). DStabilize: a web resource to generate mirror images of biomolecules. Structure, 28 (12), 1358-1360.e2. doi: 10.1016/j.str.2020.07.014 |
