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2026 Journal Article Atomic elementary flux modes explain the steady state flow of metabolites in large-scale flux networksChitpin, Justin G. and Perkins, Theodore J. (2026). Atomic elementary flux modes explain the steady state flow of metabolites in large-scale flux networks. Cell Reports Methods 101462, 101462. doi: 10.1016/j.crmeth.2026.101462 |
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2023 Journal Article A Markov constraint to uniquely identify elementary flux mode weights in unimolecular metabolic networksChitpin, Justin G. and Perkins, Theodore J. (2023). A Markov constraint to uniquely identify elementary flux mode weights in unimolecular metabolic networks. Journal of Theoretical Biology, 575 111632, 1-9. doi: 10.1016/j.jtbi.2023.111632 |
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2022 Journal Article BATL: Bayesian annotations for targeted lipidomicsChitpin, Justin G., Surendra, Anuradha, Nguyen, Thao T., Taylor, Graeme P., Xu, Hongbin, Alecu, Irina, Ortega, Roberto, Tomlinson, Julianna J., Crawley, Angela M., McGuinty, Michaeline, Schlossmacher, Michael G., Saunders-Pullman, Rachel, Cuperlovic-Culf, Miroslava, Bennett, Steffany A. L. and Perkins, Theodore J. (2022). BATL: Bayesian annotations for targeted lipidomics. Bioinformatics, 38 (6), 1593-1599. doi: 10.1093/bioinformatics/btab854 |
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2019 Journal Article RECAP reveals the true statistical significance of ChIP-seq peak callsChitpin, Justin G., Awdeh, Aseel and Perkins, Theodore J. (2019). RECAP reveals the true statistical significance of ChIP-seq peak calls. Bioinformatics, 35 (19), 3592-3598. doi: 10.1093/bioinformatics/btz150 |
