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2015 Journal Article DNA marker transmission and linkage analysis in populations derived from a sugarcane (Saccharum spp.) x Erianthus arundinaceus hybridChen, Jian-Wen, Lao, Fang-Ye, Chen, Xi-Wen, Deng, Hai-Hua, Liu, Rui, He, Hui-Yi, Fu, Cheng, Chen, Yong-Sheng, Liu, Fu-Ye, Li, Qi-Wei, Jackson, Phillip and Aitken, Karen (2015). DNA marker transmission and linkage analysis in populations derived from a sugarcane (Saccharum spp.) x Erianthus arundinaceus hybrid. PLoS ONE, 10 (6) e0128865. doi: 10.1371/journal.pone.0128865 |
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2015 Journal Article Complete genome sequence of Sporisorium scitamineum and biotrophic interaction transcriptome with sugarcaneTaniguti, Lucas M., Schaker, Patricia D. C., Benevenuto, Juliana, Peters, Leila P., Carvalho, Giselle, Palhares, Alessandra, Quecine, Maria C., Nunes, Filipe R. S., Kmit, Maria C. P., Wai, Alvan, Hausner, Georg, Aitken, Karen S., Berkman, Paul J., Fraser, James A., Moolhuijzen, Paula M., Coutinho, Luiz L., Creste, Silvana, Vieira, Maria L. C., Kitajima, João P. and Monteiro-Vitorello, Claudia B. (2015). Complete genome sequence of Sporisorium scitamineum and biotrophic interaction transcriptome with sugarcane. PLoS One, 10 (6) e0129318, e0129318. doi: 10.1371/journal.pone.0129318 |
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2015 Journal Article Characterisation of alleles of the sucrose phosphate synthase gene family in sugarcane and their association with sugar-related traitsMcIntyre, C.L, Goode, M.L, Cordeiro, G, Bundock, P, Eliott, F, Henry, R.J, Casu, R.E, Bonnett, G.D and Aitken, K.S (2015). Characterisation of alleles of the sucrose phosphate synthase gene family in sugarcane and their association with sugar-related traits. Molecular Breeding, 35 (3) 98. doi: 10.1007/s11032-015-0286-5 |
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2015 Journal Article Using quantitative PCR with retrotransposon-based insertion polymorphisms as markers in sugarcaneMetcalfe, Cushla J., Oliveira, Sarah G., Gaiarsa, Jonas W., Aitken, Karen S., Carneiro, Monalisa S., Zatti, Fernanda and Van Sluys, Marie-Anne (2015). Using quantitative PCR with retrotransposon-based insertion polymorphisms as markers in sugarcane. Journal of Experimental Botany, 66 (14), 4239-4250. doi: 10.1093/jxb/erv283 |
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2014 Journal Article Comparative mapping in the Poaceae family reveals translocations in the complex polyploid genome of sugarcaneAitken, Karen S., McNeil, Meredith D., Berkman, Paul J., Hermann, Scott, Kilian, Andrzej, Bundock, Peter C. and Li, Jingchuan (2014). Comparative mapping in the Poaceae family reveals translocations in the complex polyploid genome of sugarcane. BMC Plant Biology, 14 (1) 190, 1-15. doi: 10.1186/s12870-014-0190-x |
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2014 Journal Article A comprehensive genetic map of sugarcane that provides enhanced map coverage and integrates high-throughput Diversity Array Technology (DArT) markersAitken, Karen S., McNeil, Meredith D., Hermann, Scott, Bundock, Peter C., Kilian, Andrzej, Heller-Uszynska, Katarzyna, Henry, Robert J. and Li, Jingchuan (2014). A comprehensive genetic map of sugarcane that provides enhanced map coverage and integrates high-throughput Diversity Array Technology (DArT) markers. BMC Genomics, 15 (152) 152, 1-12. doi: 10.1186/1471-2164-15-152 |
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2014 Journal Article A Survey Sequence Comparison of Saccharum Genotypes Reveals Allelic Diversity DifferencesBerkman, Paul J., Bundock, Peter C., Casu, Rosanne E., Henry, Robert J., Rae, Anne L. and Aitken, Karen S. (2014). A Survey Sequence Comparison of Saccharum Genotypes Reveals Allelic Diversity Differences. Tropical Plant Biology, 7 (2), 71-83. doi: 10.1007/s12042-014-9139-3 |
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2013 Journal Article Towards a reliable method to select potentially high value <i>Erianthus</i> hybridsPiperidis, N., Aitken, K. and Hermann, S. (2013). Towards a reliable method to select potentially high value Erianthus hybrids. International Sugar Journal, 115 (1379), 794-799. |
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2012 Journal Article Assessment of the genetic diversity in a collection of Erianthus arundinaceusCai, Q., Aitken, K. S., Fan, Y. H., Piperidis, G., Liu, X. L., McIntyre, C. L., Huang, X. Q. and Jackson, P. (2012). Assessment of the genetic diversity in a collection of Erianthus arundinaceus. Genetic Resources and Crop Evolution, 59 (7), 1483-1491. doi: 10.1007/s10722-011-9776-4 |
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2012 Journal Article Evidence for second division restitution as the basis for 2n + n maternal chromosome transmission in a sugarcane crossHermann, S. R., Aitken, K. S., Jackson, P. A., George, A. W., Piperidis, N., Wei, X., Kilian, A. and Detering, F. (2012). Evidence for second division restitution as the basis for 2n + n maternal chromosome transmission in a sugarcane cross. Euphytica, 187 (3), 359-368. doi: 10.1007/s10681-012-0698-9 |
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2011 Journal Article Diversity Arrays Technology effectively reveals DNA polymorphism in a large and complex genome of sugarcaneHeller-Uszynska, Katarzyna, Uszynski, Grzegorz, Huttner, Eric, Evers, Margaret, Carlig, Jason, Caig, Vanessa, Aitken, Karen, Jackson, Phillip, Piperidis, George, Cox, Mike, Gilmour, Ross, D'Hont, Angelique, Butterfield, Mike, Glaszmann, Jean-Christophe and Kilian, Andrzej (2011). Diversity Arrays Technology effectively reveals DNA polymorphism in a large and complex genome of sugarcane. Molecular Breeding, 28 (1), 37-55. doi: 10.1007/s11032-010-9460-y |
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2011 Journal Article Conversion of AFLP markers to high-throughput markers in a complex polyploid, sugarcaneMcNeil, Meredith D., Hermann, Scott, Jackson, Phillip A. and Aitken, Karen S. (2011). Conversion of AFLP markers to high-throughput markers in a complex polyploid, sugarcane. Molecular Breeding, 27 (3), 395-407. doi: 10.1007/s11032-010-9441-1 |
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2010 Journal Article A New Approach for Copy Number Estimation in PolyploidsGeorge, Andrew W. and Aitken, Karen (2010). A New Approach for Copy Number Estimation in Polyploids. Journal of Heredity, 101 (4), 521-524. doi: 10.1093/jhered/esq034 |
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2010 Journal Article Bayesian estimation of marker dosage in sugarcane and other autopolyploidsBaker, Peter, Jackson, Phillip and Aitken, Karen (2010). Bayesian estimation of marker dosage in sugarcane and other autopolyploids. Theoretical and Applied Genetics, 120 (8), 1653-1672. doi: 10.1007/s00122-010-1283-z |
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2010 Journal Article A quantitative genetics approach to nitrogen use efficiency in sugarcaneWhan, Alex, Robinson, Nicole, Lakshmanan, Prakash, Schmidt, Susanne and Aitken, Karen (2010). A quantitative genetics approach to nitrogen use efficiency in sugarcane. Functional Plant Biology, 37 (5), 448-454. doi: 10.1071/FP09260 |
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2010 Journal Article Construction of molecular genetic linkage map of sugarcane based on SSR and AFLP markers: construction of molecular genetic linkage map of sugarcane based on SSR and AFLP markersLiu, Xin-Long, Mao, Jun, Lu, Xin, Ma, Li, Aitken, Karen Sarah, Jackson, Phillip Andrew, Cai, Qing and Fan, Yuan-Hong (2010). Construction of molecular genetic linkage map of sugarcane based on SSR and AFLP markers: construction of molecular genetic linkage map of sugarcane based on SSR and AFLP markers. Zuowu Xuebao, 36 (1), 177-183. doi: 10.3724/sp.j.1006.2010.00177 |
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2009 Journal Article Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencingBundock, Peter C., Eliott, Frances G., Ablett, Gary, Benson, Adam D., Casu, Rosanne E., Aitken, Karen S. and Henry, Robert J. (2009). Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing. Plant Biotechnology Journal, 7 (4), 347-354. doi: 10.1111/j.1467-7652.2009.00401.x |
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2008 Journal Article Genetic control of yield related stalk traits in sugarcaneAitken, K. S., Hermann, S., Karno, K., Bonnett, G. D., McIntyre, L. C. and Jackson, P. A. (2008). Genetic control of yield related stalk traits in sugarcane. Theoretical and Applied Genetics, 117 (7), 1191-1203. doi: 10.1007/s00122-008-0856-6 |
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2008 Journal Article Evaluation of sugarcane x Saccharum spontaneum progeny for biomass composition and yield componentsWang, Li-Ping, Jackson, Phillip A., Lu, Xin, Fan, Yuan-Hong, Foreman, John W., Chen, Xue-Kuan, Deng, Hai-Hua, Fu, Cheng, Ma, Li and Aitken, Karen S. (2008). Evaluation of sugarcane x Saccharum spontaneum progeny for biomass composition and yield components. Crop Science, 48 (3), 951-961. doi: 10.2135/cropsci2007.10.0555 |
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2008 Journal Article Identifying the Risks of Transgene Escape from Sugarcane Crops to Related Species, with Particular Reference to Saccharum spontaneum in AustraliaBonnett, G.D., Nowak, E., Olivares-Villegas, J.J., Berding, N., Morgan, T.J. and Aitken, Karen S. (2008). Identifying the Risks of Transgene Escape from Sugarcane Crops to Related Species, with Particular Reference to Saccharum spontaneum in Australia. Tropical Plant Biology, 1 (1), 58-71. doi: 10.1007/s12042-007-9002-x |
