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2018 Journal Article A high-resolution genetic map of the cereal crown rot pathogen Fusarium pseudograminearum provides a near-complete genome assemblyGardiner, Donald M., Benfield, Aurelie H., Stiller, Jiri, Stephen, Stuart, Aitken, Karen, Liu, Chunji and Kazan, Kemal (2018). A high-resolution genetic map of the cereal crown rot pathogen Fusarium pseudograminearum provides a near-complete genome assembly. Molecular Plant Pathology, 19 (1), 217-226. doi: 10.1111/mpp.12519 |
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2017 Conference Publication Development of a high-throughput, low-cost SNP genotyping panel for sugarcane breedingMcNeil, Meredith D., Piperidis, George, Bhuiyan, Shamsul, Li, Jingchuan, Wei, Xianming, Collard, Bert and Aitken, Karen (2017). Development of a high-throughput, low-cost SNP genotyping panel for sugarcane breeding. 39th Conference of the Australian Society of Sugar Cane Technologists, ASSCT 2017, Cairns, QLD Australia, 3-5 May 2017. Mackay, QLD Australia: Australian Society of Sugar Cane Technologists. |
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2016 Journal Article RNAseq transcriptional profiling following whip development in sugarcane smut diseaseSchaker, Patricia D. C., Palhares, Alessandra C., Taniguti, Lucas M., Peters, Leila P., Creste, Silvana, Aitken, Karen S., Van Sluys, Marie-Anne, Kitajima, João P., Vieira, Maria L. C. and Monteiro-Vitorello, Claudia B. (2016). RNAseq transcriptional profiling following whip development in sugarcane smut disease. PLoS ONE, 11 (9) 0162237, e0162237. doi: 10.1371/journal.pone.0162237 |
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2016 Conference Publication The first sugarcane genome assembly: how can we use it?Aitken, Karen, Berkman, Paul and Rae, Anne (2016). The first sugarcane genome assembly: how can we use it?. 38th Conference of the Australian Society of Sugar Cane Technologists (ASSCT 2016), Makay, QLD, Australia, 27 - 29 April 2016. Mackay, QLD, Australia: Australian Society of Sugar Cane Technologists. |
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2015 Journal Article DNA marker transmission and linkage analysis in populations derived from a sugarcane (Saccharum spp.) x Erianthus arundinaceus hybridChen, Jian-Wen, Lao, Fang-Ye, Chen, Xi-Wen, Deng, Hai-Hua, Liu, Rui, He, Hui-Yi, Fu, Cheng, Chen, Yong-Sheng, Liu, Fu-Ye, Li, Qi-Wei, Jackson, Phillip and Aitken, Karen (2015). DNA marker transmission and linkage analysis in populations derived from a sugarcane (Saccharum spp.) x Erianthus arundinaceus hybrid. PLoS ONE, 10 (6) e0128865. doi: 10.1371/journal.pone.0128865 |
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2015 Journal Article Complete genome sequence of Sporisorium scitamineum and biotrophic interaction transcriptome with sugarcaneTaniguti, Lucas M., Schaker, Patricia D. C., Benevenuto, Juliana, Peters, Leila P., Carvalho, Giselle, Palhares, Alessandra, Quecine, Maria C., Nunes, Filipe R. S., Kmit, Maria C. P., Wai, Alvan, Hausner, Georg, Aitken, Karen S., Berkman, Paul J., Fraser, James A., Moolhuijzen, Paula M., Coutinho, Luiz L., Creste, Silvana, Vieira, Maria L. C., Kitajima, João P. and Monteiro-Vitorello, Claudia B. (2015). Complete genome sequence of Sporisorium scitamineum and biotrophic interaction transcriptome with sugarcane. PLoS One, 10 (6) e0129318, e0129318. doi: 10.1371/journal.pone.0129318 |
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2015 Journal Article Characterisation of alleles of the sucrose phosphate synthase gene family in sugarcane and their association with sugar-related traitsMcIntyre, C.L, Goode, M.L, Cordeiro, G, Bundock, P, Eliott, F, Henry, R.J, Casu, R.E, Bonnett, G.D and Aitken, K.S (2015). Characterisation of alleles of the sucrose phosphate synthase gene family in sugarcane and their association with sugar-related traits. Molecular Breeding, 35 (3) 98. doi: 10.1007/s11032-015-0286-5 |
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2015 Conference Publication Towards the sugarcane genome sequence and an understanding of polyploidyBerkman, P. J., Casu, R. E., Stiller, J., Rae, A. L. and Aitken, K. S. (2015). Towards the sugarcane genome sequence and an understanding of polyploidy. 28th Congress of the International-Society-of-Sugar-Cane-Technologists, Sao Paulo Brazil, Jun 24-27, 2013. London: INT SUGAR JOURNAL LTD. |
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2015 Journal Article Using quantitative PCR with retrotransposon-based insertion polymorphisms as markers in sugarcaneMetcalfe, Cushla J., Oliveira, Sarah G., Gaiarsa, Jonas W., Aitken, Karen S., Carneiro, Monalisa S., Zatti, Fernanda and Van Sluys, Marie-Anne (2015). Using quantitative PCR with retrotransposon-based insertion polymorphisms as markers in sugarcane. Journal of Experimental Botany, 66 (14), 4239-4250. doi: 10.1093/jxb/erv283 |
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2014 Journal Article Comparative mapping in the Poaceae family reveals translocations in the complex polyploid genome of sugarcaneAitken, Karen S., McNeil, Meredith D., Berkman, Paul J., Hermann, Scott, Kilian, Andrzej, Bundock, Peter C. and Li, Jingchuan (2014). Comparative mapping in the Poaceae family reveals translocations in the complex polyploid genome of sugarcane. BMC Plant Biology, 14 (1) 190, 1-15. doi: 10.1186/s12870-014-0190-x |
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2014 Journal Article A comprehensive genetic map of sugarcane that provides enhanced map coverage and integrates high-throughput Diversity Array Technology (DArT) markersAitken, Karen S., McNeil, Meredith D., Hermann, Scott, Bundock, Peter C., Kilian, Andrzej, Heller-Uszynska, Katarzyna, Henry, Robert J. and Li, Jingchuan (2014). A comprehensive genetic map of sugarcane that provides enhanced map coverage and integrates high-throughput Diversity Array Technology (DArT) markers. BMC Genomics, 15 (152) 152, 1-12. doi: 10.1186/1471-2164-15-152 |
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2014 Journal Article A Survey Sequence Comparison of Saccharum Genotypes Reveals Allelic Diversity DifferencesBerkman, Paul J., Bundock, Peter C., Casu, Rosanne E., Henry, Robert J., Rae, Anne L. and Aitken, Karen S. (2014). A Survey Sequence Comparison of Saccharum Genotypes Reveals Allelic Diversity Differences. Tropical Plant Biology, 7 (2), 71-83. doi: 10.1007/s12042-014-9139-3 |
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2014 Conference Publication Flowering-related genes are not involved in the development of smut whipGlassop, D., Bonnett, G., Croft, B., Bhuiyan, S., Aitken, K. and Rae, A. (2014). Flowering-related genes are not involved in the development of smut whip. 36th Conference of the Australian Society of Sugar Cane Technologists, ASSCT 2014, Broadbeach, QLD Australia, 28 April - 1 May 2014. Mackay, QLD Australia: Australian Society of Sugar Cane Technologists. |
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2013 Journal Article Towards a reliable method to select potentially high value <i>Erianthus</i> hybridsPiperidis, N., Aitken, K. and Hermann, S. (2013). Towards a reliable method to select potentially high value Erianthus hybrids. International Sugar Journal, 115 (1379), 794-799. |
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2012 Journal Article Assessment of the genetic diversity in a collection of Erianthus arundinaceusCai, Q., Aitken, K. S., Fan, Y. H., Piperidis, G., Liu, X. L., McIntyre, C. L., Huang, X. Q. and Jackson, P. (2012). Assessment of the genetic diversity in a collection of Erianthus arundinaceus. Genetic Resources and Crop Evolution, 59 (7), 1483-1491. doi: 10.1007/s10722-011-9776-4 |
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2012 Journal Article Evidence for second division restitution as the basis for 2n + n maternal chromosome transmission in a sugarcane crossHermann, S. R., Aitken, K. S., Jackson, P. A., George, A. W., Piperidis, N., Wei, X., Kilian, A. and Detering, F. (2012). Evidence for second division restitution as the basis for 2n + n maternal chromosome transmission in a sugarcane cross. Euphytica, 187 (3), 359-368. doi: 10.1007/s10681-012-0698-9 |
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2011 Conference Publication Utilisation of wild canes from ChinaJackson, P. A., Fan, Y-H., Li, Q-W., Deng, H-H., Morgan, T. E., Piperidis, G. and Aitken, K. S. (2011). Utilisation of wild canes from China. 27th Congress of the International-Society-of-Sugar-Cane-Technologists, Veracruz Mexico, Mar 07-11, 2010. KENT: INT SUGAR JOURNAL LTD. |
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2011 Journal Article Diversity Arrays Technology effectively reveals DNA polymorphism in a large and complex genome of sugarcaneHeller-Uszynska, Katarzyna, Uszynski, Grzegorz, Huttner, Eric, Evers, Margaret, Carlig, Jason, Caig, Vanessa, Aitken, Karen, Jackson, Phillip, Piperidis, George, Cox, Mike, Gilmour, Ross, D'Hont, Angelique, Butterfield, Mike, Glaszmann, Jean-Christophe and Kilian, Andrzej (2011). Diversity Arrays Technology effectively reveals DNA polymorphism in a large and complex genome of sugarcane. Molecular Breeding, 28 (1), 37-55. doi: 10.1007/s11032-010-9460-y |
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2011 Journal Article Conversion of AFLP markers to high-throughput markers in a complex polyploid, sugarcaneMcNeil, Meredith D., Hermann, Scott, Jackson, Phillip A. and Aitken, Karen S. (2011). Conversion of AFLP markers to high-throughput markers in a complex polyploid, sugarcane. Molecular Breeding, 27 (3), 395-407. doi: 10.1007/s11032-010-9441-1 |
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2010 Journal Article A New Approach for Copy Number Estimation in PolyploidsGeorge, Andrew W. and Aitken, Karen (2010). A New Approach for Copy Number Estimation in Polyploids. Journal of Heredity, 101 (4), 521-524. doi: 10.1093/jhered/esq034 |
