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2024 Journal Article Proteomic analysis of the sponge Aggregation Factor implicates an ancient toolkit for allorecognition and adhesion in animalsRuperti, Fabian, Dzieciatkowska, Monika, Pankey, M. Sabrina, Asensio, Cedric S., Anselmetti, Dario, Fernandez-Busquets, Xavier and Nichols, Scott A. (2024). Proteomic analysis of the sponge Aggregation Factor implicates an ancient toolkit for allorecognition and adhesion in animals. Proceedings of the National Academy of Sciences, 121 (52) e2409125121, 1-11. doi: 10.1073/pnas.2409125121 |
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2024 Journal Article Author Correction: Cross-phyla protein annotation by structural prediction and alignmentRuperti, Fabian, Papadopoulos, Nikolaos, Musser, Jacob M., Mirdita, Milot, Steinegger, Martin and Arendt, Detlev (2024). Author Correction: Cross-phyla protein annotation by structural prediction and alignment. Genome Biology, 25 (1) 50, 1-1. doi: 10.1186/s13059-024-03196-9 |
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2024 Journal Article Molecular profiling of sponge deflation reveals an ancient relaxant-inflammatory responseRuperti, Fabian, Becher, Isabelle, Stokkermans, Anniek, Wang, Ling, Marschlich, Nick, Potel, Clement, Maus, Emanuel, Stein, Frank, Drotleff, Bernhard, Schippers, Klaske J., Nickel, Michael, Prevedel, Robert, Musser, Jacob M., Savitski, Mikhail M. and Arendt, Detlev (2024). Molecular profiling of sponge deflation reveals an ancient relaxant-inflammatory response. Current Biology, 34 (2), 1-25. doi: 10.1016/j.cub.2023.12.021 |
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2023 Journal Article Cross-phyla protein annotation by structural prediction and alignmentRuperti, Fabian, Papadopoulos, Nikolaos, Musser, Jacob M., Mirdita, Milot, Steinegger, Martin and Arendt, Detlev (2023). Cross-phyla protein annotation by structural prediction and alignment. Genome Biology, 24 (1) 113, 1-21. doi: 10.1186/s13059-023-02942-9 |
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2023 Journal Article CD3 target affinity chromatography mass spectrometry as a new tool for function-structure characterization of T-cell engaging bispecific antibody proteoforms and product-related variantsLippold, Steffen, Hook, Michaela, Spick, Christian, Knaupp, Alexander, Whang, Kevin, Ruperti, Fabian, Cadang, Lance, Andersen, Nisana, Vogt, Annette, Grote, Michael, Reusch, Dietmar, Haberger, Markus, Yang, Feng and Schlothauer, Tilman (2023). CD3 target affinity chromatography mass spectrometry as a new tool for function-structure characterization of T-cell engaging bispecific antibody proteoforms and product-related variants. Analytical Chemistry, 95 (4), 2260-2268. doi: 10.1021/acs.analchem.2c03827 |
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2021 Journal Article Profiling cellular diversity in sponges informs animal cell type and nervous system evolutionMusser, Jacob M., Schippers, Klaske J., Nickel, Michael, Mizzon, Giulia, Kohn, Andrea B., Pape, Constantin, Ronchi, Paolo, Papadopoulos, Nikolaos, Tarashansky, Alexander J., Hammel, Jorg U., Wolf, Florian, Liang, Cong, Hernandez-Plaza, Ana, Cantalapiedra, Carlos P., Achim, Kaia, Schieber, Nicole L., Pan, Leslie, Ruperti, Fabian, Francis, Warren R., Vargas, Sergio, Kling, Svenja, Renkert, Maike, Polikarpov, Maxim, Bourenkov, Gleb, Feuda, Roberto, Gaspar, Imre, Burkhardt, Pawel, Wang, Bo, Bork, Peer ... Arendt, Detlev (2021). Profiling cellular diversity in sponges informs animal cell type and nervous system evolution. Science, 374 (6568), 717-723. doi: 10.1126/science.abj2949 |
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2019 Journal Article Library selection with a randomized repertoire of (βα)8-barrel enzymes results in unexpected induction of gene expressionRohweder, Bettina, Lehmann, Gerhard, Eichner, Norbert, Polen, Tino, Rajendran, Chitra, Ruperti, Fabian, Linde, Mona, Treiber, Thomas, Jung, Oona, Dettmer, Katja, Meister, Gunter, Bott, Michael, Gronwald, Wolfram and Sterner, Reinhard (2019). Library selection with a randomized repertoire of (βα)8-barrel enzymes results in unexpected induction of gene expression. Biochemistry, 58 (41), 4207-4217. doi: 10.1021/acs.biochem.9b00579 |
