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2025

Journal Article

Potential utility of miRNAs derived from pleural fluid extracellular vesicles to differentiate between benign and malignant pleural effusions

Chee, Tian Mun, Zahra, Caeli J., Fong, Kwun M., Yang, Ian A. and Bowman, Rayleen V. (2025). Potential utility of miRNAs derived from pleural fluid extracellular vesicles to differentiate between benign and malignant pleural effusions. Translational Lung Cancer Research, 14 (1), 124-138. doi: 10.21037/tlcr-24-945

Potential utility of miRNAs derived from pleural fluid extracellular vesicles to differentiate between benign and malignant pleural effusions

2023

Journal Article

Optimal isolation of extracellular vesicles from pleural fluid and profiling of their microRNA cargo

Chee, Tian Mun, O'Farrell, Hannah E., Lima, Luize G., Möller, Andreas, Fong, Kwun M., Yang, Ian A. and Bowman, Rayleen V. (2023). Optimal isolation of extracellular vesicles from pleural fluid and profiling of their microRNA cargo. Journal of Extracellular Biology, 2 (10) e119, e119. doi: 10.1002/jex2.119

Optimal isolation of extracellular vesicles from pleural fluid and profiling of their microRNA cargo

2022

Book Chapter

COPD: the risk of cancer and the impact on cancer care

Yang, Ian A., Shaw, Janet G., Stephens, Edward K.H., Chee, Tian Mun, Duhig, Edwina E., Bowman, Rayleen V., Olive, Gerard N., Marshall, Henry M. and Fong, Kwun M. (2022). COPD: the risk of cancer and the impact on cancer care. Lung diseases and cancer. (pp. 91-104) edited by Peter M.A. Calverley, Miguel Ángel Martínez-García, Mina Gaga and Kwun M. Fong. Sheffield, United Kingdom: European Respiratory Society. doi: 10.1183/2312508x.10018721

COPD: the risk of cancer and the impact on cancer care

2019

Journal Article

Whole-genome sequencing of human malignant mesothelioma tumours and cell lines

Oey, Harald, Daniels, Marissa, Relan, Vandana, Chee, Tian Mun, Davidson, Morgan R., Yang, Ian A., Ellis, Jonathan J., Fong, Kwun M., Krause, Lutz and Bowman, Rayleen V. (2019). Whole-genome sequencing of human malignant mesothelioma tumours and cell lines. Carcinogenesis, 40 (6), 724-734. doi: 10.1093/carcin/bgz066

Whole-genome sequencing of human malignant mesothelioma tumours and cell lines

2025

Conference Publication

Making the quantification of asbestos bodies in lung parenchyma more efficient: automatically annotating locations of interest

Jaffrey, Daniel P., Zahra, Caeli J., Stephens, Edward K. H., Guayco Sigcha, Jazmin M., Martins, Maria, Goldsworthy, Anita, Bowman, Rayleen, Duhig, Edwina E., Fong, Kwun M., Yang, Ian A. and Chee, Tian Mun (2025). Making the quantification of asbestos bodies in lung parenchyma more efficient: automatically annotating locations of interest. Pathology Update 2025, Melbourne, VIC, Australia, 21-23 February 2025. Oxford, United Kingdom: Elsevier. doi: 10.1016/j.pathol.2024.12.227

Making the quantification of asbestos bodies in lung parenchyma more efficient: automatically annotating locations of interest

2024

Conference Publication

The prince charles hospital lung bank contributes to Sherlock international lung cancer research

Goldsworthy, A., Chee, K., Passmore, L., Brady, J., Page, B., Martins, M., Stephens, E., Zahra, C., Duhig, E., Yang, I., Marshall, H., Tan, J., Windsor, M., Naidoo, R., Godbolt, D. and Fong, K. (2024). The prince charles hospital lung bank contributes to Sherlock international lung cancer research. TSANZSRS 2024 The Australia & New Zealand Society of Respiratory Science and The Thoracic Society of Australia and New Zealand (ANZSRS/TSANZ) Annual Scientific Meeting for Leaders in Lung Health & Respiratory Science, Gold Coast, QLD, Australia, 22-26 March 2024. Hoboken, NJ, United States: Wiley.

The prince charles hospital lung bank contributes to Sherlock international lung cancer research

2024

Conference Publication

Differential expression analysis of miRNAs isolated from pleural fluid extracellular vesicles using the Nanostring nCounter® miRNA expression assay

Chee, K., Zahra, C., Fong, K., Yang, and Bowman, R. (2024). Differential expression analysis of miRNAs isolated from pleural fluid extracellular vesicles using the Nanostring nCounter® miRNA expression assay. TSANZSRS 2024 The Australia & New Zealand Society of Respiratory Science and The Thoracic Society of Australia and New Zealand (ANZSRS/TSANZ) Annual Scientific Meeting for Leaders in Lung Health & Respiratory Science, Adelaide, SA, Australia, 22–26 March 2024. Richmond, VIC, Australia: John Wiley & Sons.

Differential expression analysis of miRNAs isolated from pleural fluid extracellular vesicles using the Nanostring nCounter® miRNA expression assay

2024

Conference Publication

Extracellular vesicles-associated microRNAs for early lung cancer diagnosis: A literature review

Sigcha, Guayco J., Marshall, H., Chee, K., Yang, and Fong, K. (2024). Extracellular vesicles-associated microRNAs for early lung cancer diagnosis: A literature review. TSANZSRS 2024 The Australia & New Zealand Society of Respiratory Science and The Thoracic Society of Australia and New Zealand (ANZSRS/TSANZ) Annual Scientific Meeting for Leaders in Lung Health & Respiratory Science, Adelaide, SA, Australia, 22–26 March 2024. Richmond, VIC, Australia: John Wiley & Sons.

Extracellular vesicles-associated microRNAs for early lung cancer diagnosis: A literature review

2023

Conference Publication

Detecting KRAS mutations in peripheral blood extracellular vesicles in non-small cell lung cancer using digital droplet PCR

Zahra, C. J., Chee, K., Yang, I. A. and Fong, K. M. (2023). Detecting KRAS mutations in peripheral blood extracellular vesicles in non-small cell lung cancer using digital droplet PCR. 2023 World Conference on Lung Cancer, Singapore, Singapore, 9-12 September 2023. New York, NY, United States: Elsevier. doi: 10.1016/j.jtho.2023.09.834

Detecting KRAS mutations in peripheral blood extracellular vesicles in non-small cell lung cancer using digital droplet PCR

2023

Other Outputs

20230911 PFEV miRNA datasets

Chee, Kelly (2023). 20230911 PFEV miRNA datasets. The University of Queensland. (Dataset) doi: 10.48610/cece534

20230911 PFEV miRNA datasets

2023

Conference Publication

Twenty years of progress; the Prince Charles hospital lung bank and its role in advancing lung cancer laboratory, clinical and molecular research

Chee, Kelly Tian Mun, Martins, Maria, Goldsworthy, Anita, Hollan, Melanie, Courtney, Deborah, Passmore, Linda, Brady, Jaccalyne, Mccaul, Elizabeth, Duhig, Edwina, Clarke, Belinda, Godbolt, David, Page, Barbara, Davidson, Morgan, Tran, Kayla, Pauli, John, Manawar, Sheyna, Gupta, Shilpi, Windsor, Morgan, Naidoo, Rishen, Bowman, Raylee, Marshall, Henry, Yang, Ian and Fong, Kwun (2023). Twenty years of progress; the Prince Charles hospital lung bank and its role in advancing lung cancer laboratory, clinical and molecular research. Australian Lung Cancer Conference 2023, Gold Coast, QLD, Australia, 15 - 17 February 2023. Richmond, VIC, Australia: John Wiley & Sons.

Twenty years of progress; the Prince Charles hospital lung bank and its role in advancing lung cancer laboratory, clinical and molecular research

2023

Conference Publication

Applicability of lung cancer resection specimens donated to a prospective lung bank for genomic research focus on lung cancer in never smokers

Chee, Kelly Tian Mun, Daniels, Marissa, Stephens, Edward, Martins, Maria, Hollan, Melanie, Page, Barbara, Goldsworthy, Anita, Windsor, Morgan, Naidoo, Rishen, Marshall, Henry, Bowman, Rayleen, Yang, Ian and Fong, Kwun (2023). Applicability of lung cancer resection specimens donated to a prospective lung bank for genomic research focus on lung cancer in never smokers. Australian Lung Cancer Conference 2023, Gold Coast, QLD, Australia, 15-17 February 2023. Richmond, VIC, Australia: John Wiley & Sons.

Applicability of lung cancer resection specimens donated to a prospective lung bank for genomic research focus on lung cancer in never smokers

2023

Conference Publication

Small RNA sequencing from EV-enriched and unenriched plasma fractions to differentiate between NSCLC with and without nodal metastasis

Keir, Elizabeth, Chee, Tian Mun, Fong, Kwun and Yang, Ian (2023). Small RNA sequencing from EV-enriched and unenriched plasma fractions to differentiate between NSCLC with and without nodal metastasis. HOBOKEN: WILEY.

Small RNA sequencing from EV-enriched and unenriched plasma fractions to differentiate between NSCLC with and without nodal metastasis

2022

Other Outputs

Evaluation of Pleural Fluid Extracellular Vesicles for Diagnostic Utility in Malignant Pleural Mesothelioma

Chee, Tian Mun (2022). Evaluation of Pleural Fluid Extracellular Vesicles for Diagnostic Utility in Malignant Pleural Mesothelioma. PhD Thesis, Faculty of Medicine, The University of Queensland. doi: 10.14264/f065b96

Evaluation of Pleural Fluid Extracellular Vesicles for Diagnostic Utility in Malignant Pleural Mesothelioma

2019

Conference Publication

Fusion genes identified from whole genome and whole transcriptome sequencing of malignant pleural mesothelioma tumours

Chee, T. M., Oey, H., Fong, K., Yang, I., Krause, L. and Bowman, R. (2019). Fusion genes identified from whole genome and whole transcriptome sequencing of malignant pleural mesothelioma tumours. IASLC 2019 World Conference on Lung Cancer, Barcelona, Spain, 7-10 September 2019. New York, NY, United States: Elsevier . doi: 10.1016/j.jtho.2019.08.697

Fusion genes identified from whole genome and whole transcriptome sequencing of malignant pleural mesothelioma tumours

2016

Conference Publication

Intratumoral genomic heterogeneity of primary pulmonary adenocarcinoma in never smokers

Daniels, Marissa G., Krause, Lutz, Ellis, Jonathan J., Yang, Ian A., Bowman, Rayleen V., Relan, Vandana, Chee, Kelly, Goh, Felicia, Parris, Brielle, Morrison, Leanne, Martins, Maria, Passmore, Linda, McCaul, Elizabeth, Courtney, Deborah, Duhig, Edwina, Windsor, Morgan, Naidoo, Rishendran and Fong, Kwun M. (2016). Intratumoral genomic heterogeneity of primary pulmonary adenocarcinoma in never smokers. Meeting of the American-Association-for-Cancer-Research (AACR) Precision Medicine Series - Integrating Clinical Genomics and Cancer Therapy, Salt Lake City, UT, United States, 13-16 June 2015. Philadelphia, PA, United States: Elsevier. doi: 10.1158/1557-3265.PMSCLINGEN15-24

Intratumoral genomic heterogeneity of primary pulmonary adenocarcinoma in never smokers

2015

Conference Publication

Inter-, and Intratumoural Genomic Heterogeneity of Primary Pulmonary Adenocarcinoma in Never Smokers

Daniels, Marissa, Krause, Lutz, Ellis, Jonathan, Yang, Ian A., Bowman, Rayleen V., Relan, Vandana, Chee, Kelly, Goh, Felicia, Parris, Brielle, Morrison, Leanne, Martins, Maria, Mccaul, Elizabeth, Passmore, Linda, Courtney, Deborah, Duhig, Edwina, Naidoo, Rishendran, Fong, Kwun and Windsor, Morgan (2015). Inter-, and Intratumoural Genomic Heterogeneity of Primary Pulmonary Adenocarcinoma in Never Smokers. 16th World Conference on Cancer, Denver, CO, United States, 6-9 September 2015. New York, United States: Elsevier.

Inter-, and Intratumoural Genomic Heterogeneity of Primary Pulmonary Adenocarcinoma in Never Smokers

2014

Conference Publication

Drug resistant gene expression changes in carboplatin tolerant mesothelioma cells

Relan, V., Morrison, L., Chee, T., Yang, I., Fong, K. and Bowman, R. (2014). Drug resistant gene expression changes in carboplatin tolerant mesothelioma cells. Thoracic Society of Australia & New Zealand and the Australian & New Zealand Society of Respiratory Science 2014 Annual Scientific Meetings, Adelaide, Australia, 4‐9 April 2014. Richmond, VIC, Australia: Wiley-Blackwell.

Drug resistant gene expression changes in carboplatin tolerant mesothelioma cells

2013

Conference Publication

Heterogeneity in tumour content and necrosis in primary lung cancers: Implications for molecular analysis

Goh, Felicia, Duhig, Edwina, Clarke, Belinda, Dettrick, Andrew, Godbolt, David, Tran, Kayla, Franz, Louise, Barr, Jeremy, Parsonson, Kylie, Martins, Maria, Davidson, Morgan, Wright, Casey, De laat, John, Shaw, Janet, Martin, Jennifer, Parris, Brielle, Shaw, Eloise, De Souza, Laura, Tjahjadi, Jane, Daniels, Marissa, Larsen, Jill E., Semmler, Annalese, Stockwell, Rachel, Savarimuthu, Santiyagu, Relan, Vandana, Sriram, Krishna, Campbell, Jennifer, Kim, Samuel, Tan, Maxine ... Fong, Kwun (2013). Heterogeneity in tumour content and necrosis in primary lung cancers: Implications for molecular analysis. 15th World Conference on Lung Cancer, Sydney, Australia, October 27-30, 2013. New York, United States: Elsevier. doi: 10.1097/01.JTO.0000438438.14562.c8

Heterogeneity in tumour content and necrosis in primary lung cancers: Implications for molecular analysis