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2021 Journal Article Rapid detection of NDM and VIM carbapenemase encoding genes by recombinase polymerase amplification and lateral flow–based detectionAyfan, Abdulrahman K. S., Macdonald, Joanne, Harris, Patrick N. A., Heney, Claire, Paterson, David L., Trembizki, Ella, Wang, Claire Y. T., Whiley, David M., Zowawi, Hosam M. and Irwin, Adam D. (2021). Rapid detection of NDM and VIM carbapenemase encoding genes by recombinase polymerase amplification and lateral flow–based detection. European Journal of Clinical Microbiology & Infectious Diseases, 40 (11), 2447-2453. doi: 10.1007/s10096-021-04267-6 |
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2021 Other Outputs Modelling outbreak response strategies for preventing spread of emergent Neisseria gonorrhoeae strains in men who have sex with men in AustraliaDuan, Qibin, Carmody, Chris, Donovan, Basil, Guy, Rebecca J, Hui, Ben B, Kaldor, John M, Lahra, Monica M, Law, Matthew G, Lewis, David A, Maley, Michael, McGregor, Skye, McNulty, Anna, Selvey, Christine, Templeton, David J, Whiley, David M, Regan, David G and Wood, James G (2021). Modelling outbreak response strategies for preventing spread of emergent Neisseria gonorrhoeae strains in men who have sex with men in Australia. doi: 10.1101/2021.04.30.21256375 |
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2021 Journal Article Reflex detection of ciprofloxacin resistance in Neisseria gonorrhoeae by use of the SpeeDx ResistancePlus GC assayLee, Darren Y.J., Ashcroft, Melinda M., Chow, Eric P.F., Sait, Michelle, De Petra, Vesna, Tschaepe, Marlene, Lange, Sigrid, Taiaroa, George, Bradshaw, Catriona S., Whiley, David M., Fairley, Christopher K., Howden, Benjamin P., Chen, Marcus Y., Pasricha, Shivani and Williamson, Deborah A. (2021). Reflex detection of ciprofloxacin resistance in Neisseria gonorrhoeae by use of the SpeeDx ResistancePlus GC assay. Journal of Clinical Microbiology, 59 (5) e00089-21. doi: 10.1128/JCM.00089-21 |
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2021 Journal Article Antiseptic mouthwash for gonorrhoea prevention (OMEGA): a randomised, double-blind, parallel-group, multicentre trialChow, Eric P. F., Williamson, Deborah A., Hocking, Jane S., Law, Matthew G., Maddaford, Kate, Bradshaw, Catriona S., McNulty, Anna, Templeton, David J., Moore, Richard, Murray, Gerald L., Danielewski, Jennifer A., Wigan, Rebecca, Chen, Marcus Y., Guy, Rebecca J., Zhang, Lei, Donovan, Basil, Grulich, Andrew E., Kaldor, John M., Whiley, David M., Cornelisse, Vincent J., Howden, Benjamin P., Lewis, David A., Read, Tim R. H. and Fairley, Christopher K. (2021). Antiseptic mouthwash for gonorrhoea prevention (OMEGA): a randomised, double-blind, parallel-group, multicentre trial. The Lancet Infectious Diseases, 21 (5), 647-656. doi: 10.1016/S1473-3099(20)30704-0 |
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2021 Journal Article Rapid macrolide and amikacin resistance testing for Mycobacterium abscessus in people with cystic fibrosisBordin, Amanda, Pandey, Sushil, Coulter, Christopher, Syrmis, Melanie, Pardo, Carolyn, Hackett, Hazel, Bell, Scott C., Wainwright, Claire E., Nimmo, Graeme R., Jennison, Amy V., Clark, Julia E. and Whiley, David M. (2021). Rapid macrolide and amikacin resistance testing for Mycobacterium abscessus in people with cystic fibrosis. Journal of Medical Microbiology, 70 (4) 001349, 1-11. doi: 10.1099/jmm.0.001349 |
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2021 Other Outputs Contemporary syphilis is characterised by rapid global spread of pandemic Treponema pallidum lineagesBeale, Mathew A., Marks, Michael, Cole, Michelle J., Lee, Min-Kuang, Pitt, Rachel, Ruis, Christopher, Balla, Eszter, Crucitti, Tania, Ewens, Michael, Fernández-Naval, Candela, Grankvist, Anna, Guiver, Malcolm, Kenyon, Chris R., Khairulin, Rafil, Kularatne, Ranmini, Arando, Maider, Molini, Barbara J., Obukhov, Andrey, Page, Emma E., Petrovay, Fruzsina, Rietmeijer, Cornelis, Rowley, Dominic, Shokoples, Sandy, Smit, Erasmus, Sweeney, Emma L., Taiaroa, George, Vera, Jaime H., Wennerås, Christine, Whiley, David M. ... Thomson, Nicholas R. (2021). Contemporary syphilis is characterised by rapid global spread of pandemic Treponema pallidum lineages. doi: 10.1101/2021.03.25.21250180 |
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2021 Other Outputs MicroPIPE: An end-to-end solution for high-quality complete bacterial genome constructionMurigneux, Valentine, Roberts, Leah W., Forde, Brian M., Phan, Minh-Duy, Nhu, Nguyen Thi Khanh, Irwin, Adam D., Harris, Patrick N. A., Paterson, David L., Schembri, Mark A., Whiley, David M. and Beatson, Scott A. (2021). MicroPIPE: An end-to-end solution for high-quality complete bacterial genome construction. doi: 10.1101/2021.02.02.429319 |
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2021 Journal Article A comparison of ThinPrep against four non-volatile transport media for HPV testing at or near the point of careBadman, S. G., Vallely, A. J., Pardo, C., Mhango, L. P., Cornall, A. M., Kaldor, J. K. and Whiley, D. (2021). A comparison of ThinPrep against four non-volatile transport media for HPV testing at or near the point of care. Pathology, 53 (2), 264-266. doi: 10.1016/j.pathol.2020.10.006 |
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2021 Journal Article Exploring the implications for coincidental treatment of Mycoplasma genitalium infection in Neisseria gonorrhoeae-positive patientsMhango, Lebogang P., Trembizki, Ella, Thng, Caroline, Whiley, David M. and Sweeney, Emma L. (2021). Exploring the implications for coincidental treatment of Mycoplasma genitalium infection in Neisseria gonorrhoeae-positive patients. JAC - Antimicrobial Resistance, 3 (1) dlab033, dlab033. doi: 10.1093/jacamr/dlab033 |
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2021 Journal Article Mycoplasma genitalium infections can comprise a mixture of both fluoroquinolone-susceptible and fluoroquinolone-resistant strainsSweeney, Emma L., Lowry, Kym, Bletchly, Cheryl, Nimmo, Graeme R. and Whiley, David M. (2021). Mycoplasma genitalium infections can comprise a mixture of both fluoroquinolone-susceptible and fluoroquinolone-resistant strains. Journal of Antimicrobial Chemotherapy, 76 (4), 887-892. doi: 10.1093/jac/dkaa542 |
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2021 Journal Article High coverage of diverse invasive meningococcal serogroup B strains by the 4-component vaccine 4CMenB in Australia, 2007–2011: concordant predictions between MATS and genetic MATSTozer, Sarah J., Smith, Helen V., Whiley, David M., Borrow, Ray, Boccadifuoco, Giuseppe, Medini, Duccio, Serruto, Davide, Giuliani, Marzia Monica, Stella, Maria, De Paola, Rosita, Muzzi, Alessandro, Pizza, Mariagrazia, Sloots, Theo P. and Nissen, Michael D. (2021). High coverage of diverse invasive meningococcal serogroup B strains by the 4-component vaccine 4CMenB in Australia, 2007–2011: concordant predictions between MATS and genetic MATS. Human Vaccines and Immunotherapeutics, 17 (9), 3230-3238. doi: 10.1080/21645515.2021.1904758 |
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2021 Journal Article Emergence and impact of oprD mutations in Pseudomonas aeruginosa strains in cystic fibrosisSherrard, Laura J., Wee, Bryan A., Duplancic, Christine, Ramsay, Kay A., Dave, Keyur A., Ballard, Emma, Wainwright, Claire E., Grimwood, Keith, Sidjabat, Hanna E., Whiley, David M., Beatson, Scott A., Kidd, Timothy J. and Bell, Scott C. (2021). Emergence and impact of oprD mutations in Pseudomonas aeruginosa strains in cystic fibrosis. Journal of Cystic Fibrosis, 21 (1), e35-e43. doi: 10.1016/j.jcf.2021.03.007 |
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2021 Journal Article Evaluation of the SpeeDx ResistancePlusVR GC and SpeeDx GC 23S 2611 (beta) molecular assays for prediction of antimicrobial resistance/susceptibility to ciprofloxacin and azithromycin in Neisseria gonorrhoeaeHadad, Ronza, Cole, Michelle Jayne, Ebeyan, Samantha, Jacobsson, Susanne, Tan, Lit Yeen, Golparian, Daniel, Erskine, Simon, Day, Michaela, Whiley, David, Unemo, Magnus and the European collaborative group (2021). Evaluation of the SpeeDx ResistancePlusVR GC and SpeeDx GC 23S 2611 (beta) molecular assays for prediction of antimicrobial resistance/susceptibility to ciprofloxacin and azithromycin in Neisseria gonorrhoeae. Journal of Antimicrobial Chemotherapy, 76 (1), 84-90. doi: 10.1093/JAC/DKAA381 |
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2020 Journal Article Improved sensitivity from pooled urine, pharyngeal and rectal specimens when using a molecular assay for the detection of chlamydia and gonorrhoea near point of careDean, Judith Ann, Bell, Sara Fiona Elizabeth, Coffey, Luke, Debattista, Joseph, Badman, Steven, Redmond, Andrew M, Whiley, David M., Lemoire, Jime, Williams, Owain David, Howard, Chris and Gilks, Charles F. (2020). Improved sensitivity from pooled urine, pharyngeal and rectal specimens when using a molecular assay for the detection of chlamydia and gonorrhoea near point of care. Sexually Transmitted Infections, 97 (6), sextrans-2020. doi: 10.1136/sextrans-2020-054835 |
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2020 Journal Article Evaluation of commercially available viral transport medium (VTM) for SARS-CoV-2 inactivation and use in point-of-care (POC) testingVan Bockel, David, Munier, C. Mee Ling, Turville, Stuart, Badman, Steven G., Walker, Gregory, Stella, Alberto Ospina, Aggarwal, Anupriya, Yeang, Malinna, Condylios, Anna, Kelleher, Anthony D., Applegate, Tanya L., Vallely, Andrew, Whiley, David, Rawlinson, William, Cunningham, Phillip, Kaldor, John and Guy, Rebecca (2020). Evaluation of commercially available viral transport medium (VTM) for SARS-CoV-2 inactivation and use in point-of-care (POC) testing. Viruses, 12 (11) 1208, 1-11. doi: 10.3390/v12111208 |
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2020 Journal Article Enhanced molecular surveillance in response to the detection of extensively resistant gonorrhoea in AustraliaTrembizki, Ella, Jennison, Amy V, Buckley, Cameron, Bright, Amy, Holds, Judith, Ward, Alison, Pitt, John, Pendle, Stella, Baird, Rob, Freeman, Kevin, Robson, Jenny, Mhango, Lebogang, Lowry, Kym, Lahra, Monica and Whiley, David (2020). Enhanced molecular surveillance in response to the detection of extensively resistant gonorrhoea in Australia. Journal of Antimicrobial Chemotherapy, 76 (1), 270-271. doi: 10.1093/jac/dkaa402 |
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2020 Journal Article Developing target product profiles for Neisseria gonorrhoeae diagnostics in the context of antimicrobial resistance: An expert consensusFerreyra, Cecilia, Osborn, Jennifer, Moussy, Francis, Alirol, Emilie, Lahra, Monica, Whiley, David, Shafer, William, Unemo, Magnus, Klausner, Jeffrey, Cirino, Cassandra Kelly and Wi, Teodora (2020). Developing target product profiles for Neisseria gonorrhoeae diagnostics in the context of antimicrobial resistance: An expert consensus. PLoS One, 15 (9) e0237424, 1-15. doi: 10.1371/journal.pone.0237424 |
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2020 Journal Article Young Aboriginal people's sexual health risk reduction strategies: a qualitative study in remote AustraliaBell, Stephen, Ward, James, Aggleton, Peter, Murray, Walbira, Silver, Bronwyn, Lockyer, Andrew, Ferguson, Tellisa, Fairley, Christopher K., Whiley, David, Ryder, Nathan, Donovan, Basil, Guy, Rebecca, Kaldor, John and Maher, Lisa (2020). Young Aboriginal people's sexual health risk reduction strategies: a qualitative study in remote Australia. Sexual Health, 17 (4), 303-310. doi: 10.1071/SH19204 |
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2020 Journal Article Are sex norms the norm in gonococcal surveillance?George, C R Robert, Kundu, Ratan L, Whiley, David M and Lahra, Monica M (2020). Are sex norms the norm in gonococcal surveillance?. The Lancet Microbe, 1 (4), e143-e144. doi: 10.1016/S2666-5247(20)30087-2 |
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2020 Journal Article Contamination of SARS-CoV-2 RT-PCR probes at the oligonucleotide manufacturerWang, Claire Y.T., Buckley, Cameron, Bletchly, Cheryl, Harris, Patrick and Whiley, David (2020). Contamination of SARS-CoV-2 RT-PCR probes at the oligonucleotide manufacturer. Pathology, 52 (7), 814-816. doi: 10.1016/j.pathol.2020.08.002 |
