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2025 Journal Article RapidBenthos: automated segmentation and multi-view classification of coral reef communities from photogrammetric reconstructionRemmers, Tiny, Boutros, Nader, Wyatt, Mathew, Gordon, Sophie, Toor, Maren, Roelfsema, Chris, Fabricius, Katharina, Grech, Alana, Lechene, Marine and Ferrari, Renata (2025). RapidBenthos: automated segmentation and multi-view classification of coral reef communities from photogrammetric reconstruction. Methods in Ecology and Evolution, 16 (2), 427-441. doi: 10.1111/2041-210X.14477 |
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2024 Journal Article Fine-scale interplay between decline and growth determines the spatial recovery of coral communities within a reefVercelloni, Julie, Roelfsema, Chris, Kovacs, Eva M., González-Rivero, Manuel, Moores, Matthew T., Logan, Murray and Mengersen, Kerrie (2024). Fine-scale interplay between decline and growth determines the spatial recovery of coral communities within a reef. Ecography, 2024 (1) e06818, 1-13. doi: 10.1111/ecog.06818 |
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2023 Conference Publication The AquaSat-1 mission concept: actionable information on water quality and aquatic ecosystems for Australia and Western USABright, C., Ardila, D., Hestir, E., Malthus, T. J., Matthews, M., Thompson, D. R., Carter, N., Dekker, A. G., Frasson, R. P.M., Green, R. O., Held, A., Joehnk, K., Kravitz, J., Pease, J., Roelfsema, C., Seubert, C. and Wojtasiewicz, B. (2023). The AquaSat-1 mission concept: actionable information on water quality and aquatic ecosystems for Australia and Western USA. IEEE International Geoscience and Remote Sensing Symposium (IGARSS), Pasadena, CA USA, 16-21 July 2023. New York, NY USA: Institute of Electrical and Electronics Engineers. doi: 10.1109/IGARSS52108.2023.10282912 |
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2021 Journal Article How Much Shallow Coral Habitat Is There on the Great Barrier Reef?Roelfsema, Chris M., Lyons, Mitchell B., Castro-Sanguino, Carolina, Kovacs, Eva M., Callaghan, David, Wettle, Magnus, Markey, Kathryn, Borrego-Acevedo, Rodney, Tudman, Paul, Roe, Meredith, Kennedy, Emma V., Gonzalez-Rivero, Manuel, Murray, Nicholas and Phinn, Stuart R. (2021). How Much Shallow Coral Habitat Is There on the Great Barrier Reef?. Remote Sensing, 13 (21) 4343, 4343. doi: 10.3390/rs13214343 |
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2021 Journal Article Reef Cover, a coral reef classification for global habitat mapping from remote sensingKennedy, Emma V., Roelfsema, Chris M., Lyons, Mitchell B., Kovacs, Eva M., Borrego-Acevedo, Rodney, Roe, Meredith, Phinn, Stuart R., Larsen, Kirk, Murray, Nicholas J., Yuwono, Doddy, Wolff, Jeremy and Tudman, Paul (2021). Reef Cover, a coral reef classification for global habitat mapping from remote sensing. Scientific Data, 8 (1) 196, 196. doi: 10.1038/s41597-021-00958-z |
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2021 Journal Article Fine-scale time series surveys reveal new insights into spatio-temporal trends in coral cover (2002–2018), of a coral reef on the Southern Great Barrier ReefRoelfsema, Chris, Kovacs, Eva M., Vercelloni, Julie, Markey, Kathryn, Rodriguez-Ramirez, Alberto, Lopez-Marcano, Sebastian, Gonzalez-Rivero, Manuel, Hoegh-Guldberg, Ove and Phinn, Stuart R. (2021). Fine-scale time series surveys reveal new insights into spatio-temporal trends in coral cover (2002–2018), of a coral reef on the Southern Great Barrier Reef. Coral Reefs, 40 (4), 1-13. doi: 10.1007/s00338-021-02104-y |
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2020 Journal Article The global distribution of seagrass meadowsMcKenzie, Leonard, Nordlund, Lina Mtwana, Jones, Benjamin Lawrence, Cullen-Unsworth, Leanne C., Roelfsema, Chris M. and Unsworth, Richard (2020). The global distribution of seagrass meadows. Environmental Research Letters, 15 (7) 074041, 074041. doi: 10.1088/1748-9326/ab7d06 |
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2018 Journal Article Coral reef applications of Sentinel-2: coverage, characteristics, bathymetry and benthic mapping with comparison to Landsat 8Hedley, John D., Roelfsema, Chris, Brando, Vittorio, Giardino, Claudia, Kutser, Tiit, Phinn, Stuart, Mumby, Peter J., Barrilero, Omar, Laporte, Jean and Koetz, Benjamin (2018). Coral reef applications of Sentinel-2: coverage, characteristics, bathymetry and benthic mapping with comparison to Landsat 8. Remote Sensing of Environment, 216, 598-614. doi: 10.1016/j.rse.2018.07.014 |
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2016 Journal Article Remote Sensing of Coral Reefs for Monitoring and Management: A ReviewHedley, John, Roelfsema, Chris M., Chollett, Iliana, Harborne, Alastair, Heron, Scott, Weeks, Scarla J., Skirving, William, Strong, Alan E., Eakin, C. Mark, Christensen, Tyler R. L., Ticzon, Victor, Bejarano, Sonia and Mumby, Peter J. (2016). Remote Sensing of Coral Reefs for Monitoring and Management: A Review. Remote Sensing, 8 (2) 118, 1-40. doi: 10.3390/rs8020118 |
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2014 Journal Article Multi-temporal mapping of seagrass cover, species and biomass: A semi-automated object based image analysis approachRoelfsema, Chris M., Lyons, Mitchell, Kovacs, Eva M., Maxwell, Paul, Saunders, Megan I., Samper-Villarreal, Jimena and Phinn, S.R. (2014). Multi-temporal mapping of seagrass cover, species and biomass: A semi-automated object based image analysis approach. Remote Sensing of Environment, 150, 172-187. doi: 10.1016/j.rse.2014.05.001 |
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2013 Journal Article Challenges of remote sensing for quantifying changes in large complex seagrass environmentsRoelfsema, Chris, Kovacs, Eva M., Saunders, Megan I., Phinn, Stuart, Lyons, Mitchell and Maxwell, Paul (2013). Challenges of remote sensing for quantifying changes in large complex seagrass environments. Estuarine, Coastal and Shelf Science, 133, 161-171. doi: 10.1016/j.ecss.2013.08.026 |
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2013 Journal Article Mapping coral reefs at reef to reef-system scales, 10s-1000s km(2), using object-based image analysisRoelfsema, Chris, Phinn, Stuart, Jupiter, Stacy, Comley, James and Albert, Simon (2013). Mapping coral reefs at reef to reef-system scales, 10s-1000s km(2), using object-based image analysis. International Journal of Remote Sensing, 34 (18), 6367-6388. doi: 10.1080/01431161.2013.800660 |
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2010 Journal Article Integrating field data with high spatial resolution multispectral satellite imagery for calibration and validation of coral reef benthic community mapsRoelfsema, Chris and Phinn, Stuart (2010). Integrating field data with high spatial resolution multispectral satellite imagery for calibration and validation of coral reef benthic community maps. Journal of Applied Remote Sensing, 4 (1) 043527, 043527.1-043527.28. doi: 10.1117/1.3430107 |
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2025 Journal Article Remote Sensing Reveals Multidecadal Trends in Coral Cover at Heron Reef, AustraliaCarrasco Rivera, David E. Carrasco, Diederiks, Faye F., Hammerman, Nicholas M., Staples, Timothy, Kovacs, Eva, Markey, Kathryn and Roelfsema, Chris M. (2025). Remote Sensing Reveals Multidecadal Trends in Coral Cover at Heron Reef, Australia. Remote Sensing, 17 (7) 1286, 1-24. doi: 10.3390/rs17071286 |
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2025 Journal Article The impact of neotectonics on the geomorphology of the northern Great Barrier ReefSansoleimani, Atefeh, Webb, Gregory E., Harris, Daniel L., Phinn, Stuart R. and Roelfsema, Chris M. (2025). The impact of neotectonics on the geomorphology of the northern Great Barrier Reef. Coral Reefs 108354, 1-15. doi: 10.1007/s00338-025-02628-7 |
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2025 Journal Article BenthicNet: A global compilation of seafloor images for deep learning applicationsLowe, Scott C., Misiuk, Benjamin, Xu, Isaac, Abdulazizov, Shakhboz, Baroi, Amit R., Bastos, Alex C., Best, Merlin, Ferrini, Vicki, Friedman, Ariell, Hart, Deborah, Hoegh-Guldberg, Ove, Ierodiaconou, Daniel, Mackin-McLaughlin, Julia, Markey, Kathryn, Menandro, Pedro S., Monk, Jacquomo, Nemani, Shreya, O’Brien, John, Oh, Elizabeth, Reshitnyk, Luba Y., Robert, Katleen, Roelfsema, Chris M., Sameoto, Jessica A., Schimel, Alexandre C. G., Thomson, Jordan A., Wilson, Brittany R., Wong, Melisa C., Brown, Craig J. and Trappenberg, Thomas (2025). BenthicNet: A global compilation of seafloor images for deep learning applications. Scientific Data, 12 (1) 230, 230-1. doi: 10.1038/s41597-025-04491-1 |
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2024 Journal Article Spatial variation in upper limits of coral cover on the Great Barrier ReefÁlvarez‐Noriega, Mariana, Ortiz, Juan C., Ceccarelli, Daniela M., Emslie, Michael J., Fabricius, Katharina E., Jonker, Michelle J., Puotinen, Marji, Robson, Barbara J., Roelfsema, Chris M., Sinclair‐Taylor, Tane H. and Ferrari, Renata (2024). Spatial variation in upper limits of coral cover on the Great Barrier Reef. Global Ecology and Biogeography, 33 (12) e13928. doi: 10.1111/geb.13928 |
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2024 Journal Article Capturing fine-scale coral dynamics with a metacommunity modelling frameworkCresswell, Anna K., Haller-Bull, Vanessa, Gonzalez-Rivero, Manuel, Gilmour, James P., Bozec, Yves-Marie, Barneche, Diego R., Robson, Barbara, Anthony, Kenneth R. N., Doropoulos, Christopher, Roelfsema, Chris, Lyons, Mitchell, Mumby, Peter J., Condie, Scott, Lago, Veronique and Ortiz, Juan-Carlos (2024). Capturing fine-scale coral dynamics with a metacommunity modelling framework. Scientific Reports, 14 (1) 24733, 1-18. doi: 10.1038/s41598-024-73464-y |
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2024 Journal Article New global area estimates for coral reefs from high-resolution mappingLyons, Mitchell B., Murray, Nicholas J., Kennedy, Emma V., Kovacs, Eva M., Castro-Sanguino, Carolina, Phinn, Stuart R., Borrego Acevedo, Rodney, Ordoñez Alvarez, Alexandra, Say, Chantel, Tudman, Paul, Markey, Kathryn, Roe, Meredith, Canto, Robert F., Fox, Helen E., Bambic, Brianna, Lieb, Zoë, Asner, Gregory P., Martin, Paulina M., Knapp, David E., Li, Jiwei, Skone, Matthew, Goldenberg, Eldan, Larsen, Kirk and Roelfsema, Chris M. (2024). New global area estimates for coral reefs from high-resolution mapping. Cell Reports Sustainability, 1 (2) 100015. doi: 10.1016/j.crsus.2024.100015 |
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2023 Journal Article Close-range underwater photogrammetry for coral reef ecology: a systematic literature reviewRemmers, Tiny, Grech, Alana, Roelfsema, Chris, Gordon, Sophie, Lechene, Marine and Ferrari, Renata (2023). Close-range underwater photogrammetry for coral reef ecology: a systematic literature review. Coral Reefs, 43 (1), 35-52. doi: 10.1007/s00338-023-02445-w |
