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2025 Conference Publication Multi-omic explainable machine learning improves cancer treatment outcome predictionTran, Khoa A., Addala, Venkateswar, Koufariotis, Lambros T., Zhang, Jia, Wood, Scott, Leonard, Conrad, Hoeijmakers, Lotte L., Blank, Christian U., Crispin-Ortuzar, Mireia, McCart. Reed, Amy, Inglis, Po-ling, Lakhani, Sunil R., Williams, Elizabeth D., Pearson, John V., Kondrashova, Olga and Waddell, Nicola (2025). Multi-omic explainable machine learning improves cancer treatment outcome prediction. AACR Special Conference in Cancer Research: Artificial Intelligence and Machine Learning, Montreal, QC Canada, 10-12 July 2025. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1557-3265.aimachine-a051 |
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2019 Conference Publication LobSig, a prognostic signature for Invasive Lobular CarcinomaMcCart Reed, Amy E., Lal, Samir, Kutasovic, Jamie R., Wockner, Leesa, Robertson, Alan, de Croft, Priyakshi Kalıta, Dalley, Andrew, Coorey, Craig P., Kuo, Luyu, Ferguson, Kaltin, Niland, Colleen, Miller, Gregory, Johnson, Julie, Reid, Lynne E., Males, Renique, Saunus, Jodi M., Chenevix-Trench, Georgia, Coin, Lachlan, Lakhani, Sunil R. and Simpson, Peter T. (2019). LobSig, a prognostic signature for Invasive Lobular Carcinoma. 7th International PacRim Breast and Prostate Cancer Meeting, Barossa Novotel, South Australia, Australia, 17-20 March 2019. |
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2019 Conference Publication Using whole genome sequencing and somatic mutation signatures to unravel insight into familial breast cancer aetiologySimpson, P., Nones, K., Johnson, J., Newell, F., Patch, A-M, Thorne, H., Kazakoff, S., De Luca, X., Parsons, M., Ferguson, K., Reid, L., Reed, A. McCart, Srihari, S., Lakis, V., Davidson, A., Mukhopadhyay, P., Holmes, O., Xu, Q., Wood, S., Leonard, C., Beasley, J., Degasperi, A., Nik-Zainal, S., Ragan, M., Spurdle, A., Khanna, K. K., Lakhani, S., Pearson, J., Chenevix-Trench, G. and Waddell, N. (2019). Using whole genome sequencing and somatic mutation signatures to unravel insight into familial breast cancer aetiology. San Antonio Breast Cancer Symposium, San Antonio, TX, United States, 4-8 December 2018. Philadelphia, PA, United States: American Association for Cancer Research. doi: 10.1158/1538-7445.SABCS18-P5-10-01 |
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2019 Conference Publication Implementation of precision oncology in breast cancer care in Qld (Q-IMPROvE).McCart Reed, Amy , Simpson, Peter , Inglis, Po , Green, Ben , Ung, Owen , Snell, Cameron , Woodward, Natasha , Pyke, Chris , Walpole, Euan , Waddell, Nic , Ladwa, Rahul , Santamaria, Gorane , O'Byrne, Ken , McCarthy, Nicole and Lakhani, Sunil (2019). Implementation of precision oncology in breast cancer care in Qld (Q-IMPROvE).. Australian Precision Oncology Symposium, Adelaide, SA Australia, 9-11 November 2019. |
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2018 Conference Publication Expression of ARGLU and FBXL3 is highly prognostic for invasive lobular carcinomaCoorey, Craig, Lal, Samir, Kutasovic, Jamie, Niland, Colleen, Ferguson, Kaltin, Kuo, Lu Yu, Reid, Lynne, Evans, Elizabeth, Porter, Alan, Lakhani, Sunil, McCart Reed, Amy and Simpson, Peter (2018). Expression of ARGLU and FBXL3 is highly prognostic for invasive lobular carcinoma. Pathology Update 2018, Sydney, NSW Australia, 2-4 March 2018. London, United Kingdom: Lippincott Williams & Wilkins. doi: 10.1016/j.pathol.2017.12.166 |
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2017 Conference Publication An integrated molecular analysis of invasive lobular carcinomaLal, S., Reed, A. McCart, Nones, K., Wockner, L., Song, S., Lakhani, S. and Simpson, P. (2017). An integrated molecular analysis of invasive lobular carcinoma. 39th Annual San Antonio Breast Cancer Symposium, San Antonio, Texas, 6-10 December 2016. Philadelphia, PA, United States: American Association for Cancer Research. doi: 10.1158/1538-7445.SABCS16-P1-05-16 |
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2017 Conference Publication Diffquik Stained Cytology Smears Provide Improved Malignant Cell Dna Yields From Lymph Nodes At Endobronchial Ultrasound Transbronchial Needle Aspiration (Ebus-Tbna)Fielding, D., Dalley, A., Bashirzadeh, F., Singh, M., Nandakumar, L., Reed, McCart A., Black, D., Waddell, N., Kazakoff, Stephen, Nones, Katia, Pearson, John, Lakhani, S. and Simpson, P. (2017). Diffquik Stained Cytology Smears Provide Improved Malignant Cell Dna Yields From Lymph Nodes At Endobronchial Ultrasound Transbronchial Needle Aspiration (Ebus-Tbna). ANZSRS/TSANZ Annual Scientific Meeting, Canberra, Australia, 24-28 March 2017. Richmond, VIC, Australia: Wiley-Blackwell. |
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2017 Conference Publication Immunohistochemical evaluation of FOXA1 expression and its correlation with breast cancer-specific survival: queensland follow up cohortDedina, Liana, Kutasovic, Jamie R., McCart Reed, Amy E., Simpson, Peter T. and Lakhani, Sunil R. (2017). Immunohistochemical evaluation of FOXA1 expression and its correlation with breast cancer-specific survival: queensland follow up cohort. Pathology Update 2017, Sydney Australia, 24 - 26 February 2017. London, United Kingdom: Lippincott Williams & Wilkins. doi: 10.1016/j.pathol.2016.12.174 |
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2017 Conference Publication Brocade: The National Breast Cancer Foundation Repository of Primary Tumours and Metastases from Breast Cancer PatientsAnderson, Robin L., Swarbrick, Alex, Johnstone, Ricky, Chua, Boon, Gill, Anthony, Saunders, Christobel, Lakhani, Sunil, Lim, Elgene, Loi, Sherene, O'Toole, Sandra A., Khanna, Kum Kum, Devereux, Lisa, Harvey, Kate and Reed, Amy McCart (2017). Brocade: The National Breast Cancer Foundation Repository of Primary Tumours and Metastases from Breast Cancer Patients. COSA's 44th Annual Scientific Meeting: Immunotherapy: Molecules and Moutains, Darling Harbour, Sydney, NSW, 13–15 November 2017. Hoboken, NJ United States: Wiley. |
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2016 Conference Publication An integrative analysis of invasive lobular breast cancerLal, Samir, McCart Reed, Amy E, Nones, Katia, Wockner Leesa, Song, Sarah, Waddell, Nic, Lakhani, Sunil and Simpson, Peter t (2016). An integrative analysis of invasive lobular breast cancer. Lorne Cancer Conference, Lorne VIC, Australia, February 11-13th 2016. |
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2016 Conference Publication Next Generation Sequencing On Endobronchial Ultrasound Transbronchial Needle Aspirate Lymph Node Specimens in Lung Cancer Shows a High Incidence of Mutations and Consistency with Single Gene TestingFielding, D., Bashirzadeh, F., Singh, M., Nandakumar, L., Reed, Mccart A., Black, D., Dalley, A., Pearson, J., Nones, K., Waddell, N., Simpson, P. and Lakhani, S. (2016). Next Generation Sequencing On Endobronchial Ultrasound Transbronchial Needle Aspirate Lymph Node Specimens in Lung Cancer Shows a High Incidence of Mutations and Consistency with Single Gene Testing. Thoracic Society of Australia & New Zealand and the Australian & New Zealand Society of Respiratory Science, Annual Scientific Meeting, Perth, WA, Australia, 1-6 April 2016. Wiley. doi: 10.1111/resp.12754_12 |
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2015 Conference Publication The role of epithelial to mesenchymal plasticity in driving the invasive capacity of 'lobular-like' tumour cell differentiation in breast cancerReed, McCart A. E., Kutasovic, J. R., Vargas, A. C., Da Silva, L., Jayanthan, J., Al-Murrani, A., Reid, L. E., Evans, E., Porter, A., Lakhani, S. R. and Simpson, P. T. (2015). The role of epithelial to mesenchymal plasticity in driving the invasive capacity of 'lobular-like' tumour cell differentiation in breast cancer. 15th International Biennial Congress of the Metastasis Research Society, Heidelberg, Germany, June 28th–July 1st, 2014. Dordrecht, Netherlands: Springer Netherlands. doi: 10.1007/s10585-015-9708-3 |
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2015 Conference Publication Breast cancer metastasis to gynaecological organs: impacting young women diagnosed with a luminal tumour subtypeKutasovic, Jamie, Reed, Amy McCart, Sim, Sarah, Cummings, Margaret, Lakhani, Sunil and Simpson, Peter (2015). Breast cancer metastasis to gynaecological organs: impacting young women diagnosed with a luminal tumour subtype. 15th International Biennial Congress of the Metastasis Research Society, Heidelberg, Germany, June 28th–July 1st, 2014. Dordrecht, Netherlands: Springer Netherlands. doi: 10.1007/s10585-015-9708-3 |
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2012 Conference Publication Abrogated cell-cell adhesion in the phenotypic drift from ductal to lobular breast cancer typesDa Silva, Leonard, McCart Reed, Amy E., Kutasovic, Jamie R., Vargas, Ana Cristina, Jayanthan, Janani, Reid, Lynne, Fritz, Brian, Cummings, Margaret C., Porter, Alan, Evans, Elizabeth, Lakhani, Sunil R. and Simpson, Peter T. (2012). Abrogated cell-cell adhesion in the phenotypic drift from ductal to lobular breast cancer types. 24th Lorne Cancer Conference 2012, Lorne, VIC, Australia, 9-11 February 2012. |
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2011 Conference Publication The role of Type XI Collagen in Breast Cancer ProgressionVargas, Ana Cristina, Simpson, Peter T., McCart Reed, Amy E., Smart, Chanel, Waddell, Nic, Lane, Annette and Lakhani, Sunil (2011). The role of Type XI Collagen in Breast Cancer Progression. LICR Translational Oncology Conference, Melbourne, Australia, 24-26 October 2011. |
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2011 Conference Publication The Role of Type XI and Type XVII Collagen in Breast Cancer ProgressionVargas, Ana Cristina, Simpson, Peter, McCart Reed, Amy, Lane, Annette, Smart, Chanel, Da Silva, Leonard and Lakhani, Sunil (2011). The Role of Type XI and Type XVII Collagen in Breast Cancer Progression. 100th Annual Meeting of the United States and Canadian Academy of Pathology, San Antonio, Texas, United States, February 6 - March 4 2011. London, United Kingdom: Nature Publishing Group. |
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2008 Conference Publication Characterisation of an intestinal neoplasm modifier locus in Apc Min miceMcCart, A., Haines, J., Suraweera, N., Tomlinson, I. and Silver, A. (2008). Characterisation of an intestinal neoplasm modifier locus in Apc Min mice. 20th Meeting of the European Association for Cancer Research, Lyon, France, 5-8 July 2008. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD. doi: 10.1016/S1359-6349(08)71321-1 |
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2004 Conference Publication Alternative splicing of KNS2 (Kinesin Light Chain 1)McCart, Amy, Mahony, Donna and Rothnagel, Joseph (2004). Alternative splicing of KNS2 (Kinesin Light Chain 1). 25th Annual Lorne Conference on the Organization and Expression of the Genome, Lorne, VIC, Australia, 15-19 February 2004. |
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2003 Conference Publication Alternative splicing of Kinesin Light Chain 1 (KNS2)McCart, Amy, Mahony, Donna and Rothnagel, Joseph (2003). Alternative splicing of Kinesin Light Chain 1 (KNS2). ComBio 2003, Melbourme, VIC, Australia, 28 September - 2 October 2003. |
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2002 Conference Publication Alternative splicing of kinesin light chain 1 (KNS2) geneMcCart, Amy, Mahony Donna and Rothnagel Joseph (2002). Alternative splicing of kinesin light chain 1 (KNS2) gene. Boden Conference Developmental Cutaneous Biology, Stradbroke Island, Australia, 14-18 April 2002. St Lucia QLD, Australia: The Uniiversity of Queensland. |
