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2025 Journal Article Democratizing open neuroimaging: Neurodesk’s approach to open data accessibility and utilizationDao, Thuy T., Masson-Trottier, Michèle, Ribeiro, Fernanda L., Scarsbrook, Joshua, Stewart, Ashley, Ye, Xincheng, Hamilton, Edan, Bollmann, Steffen and Narayanan, Aswin (2025). Democratizing open neuroimaging: Neurodesk’s approach to open data accessibility and utilization. Aperture Neuro, 5 (SI 2). doi: 10.52294/001c.144107 |
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2025 Journal Article Toward the future of scientific publishing through reproducible research artefacts enabled by NeurodeskMasson-Trottier, Michèle, Dao, Thuy T., Narayanan, Aswin and Bollmann, Steffen (2025). Toward the future of scientific publishing through reproducible research artefacts enabled by Neurodesk. Aperture Neuro, 5 (SI 3), 1-12. doi: 10.52294/001c.143700 |
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2025 Journal Article MRI-Derived Markers of Acute and Chronic Inflammatory Processes in the VTA Associated with DepressionKhalife, Sarah, Bollmann, Steffen, Zalesky, Andrew and Oestreich, Lena K. L. (2025). MRI-Derived Markers of Acute and Chronic Inflammatory Processes in the VTA Associated with Depression. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging. doi: 10.1016/j.bpsc.2025.09.003 |
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2025 Journal Article Segmentation of the human tongue musculature using MRI: Field guide and validation in motor neuron diseaseShaw, Thomas B., Ribeiro, Fernanda L., Zhu, Xiangyun, Aiken, Patrick, Bollmann, Saskia, Bollmann, Steffen, Chang, Jeryn, Chidley, Kali, Dempsey-Jones, Harriet, Eftekhari, Zeinab, Gillespie, Jennifer, Henderson, Robert D., Kiernan, Matthew C., Ktena, Ira, McCombe, Pamela A., Ngo, Shyuan T., Taubert, Shana T., Whelan, Brooke-Mai, Ye, Xincheng, Steyn, Frederik J., Tu, Sicong and Barth, Markus (2025). Segmentation of the human tongue musculature using MRI: Field guide and validation in motor neuron disease. Computers in Biology and Medicine, 196 (Part B) 110824, 1-13. doi: 10.1016/j.compbiomed.2025.110824 |
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2025 Journal Article Generalized learning induced by training and tDCS is predicted by prefrontal cortical morphologyEhrhardt, Shane E., Wards, Yohan, Shaw, Thomas B., Garner, Kelly G., Bollmann, Steffen, Mattingley, Jason B., Dux, Paul E. and Filmer, Hannah L. (2025). Generalized learning induced by training and tDCS is predicted by prefrontal cortical morphology. Cerebral Cortex, 35 (8) bhaf229. doi: 10.1093/cercor/bhaf229 |
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2025 Journal Article An annotated multi-site and multi-contrast magnetic resonance imaging dataset for the study of the human tongue musculatureRibeiro, Fernanda L., Zhu, Xiangyun, Ye, Xincheng, Tu, Sicong, Ngo, Shyuan T., Henderson, Robert D., Steyn, Frederik J., Kiernan, Matthew C., Barth, Markus, Bollmann, Steffen and Shaw, Thomas B. (2025). An annotated multi-site and multi-contrast magnetic resonance imaging dataset for the study of the human tongue musculature. Scientific Data, 12 (1) 790, 790. doi: 10.1038/s41597-025-05092-8 |
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2025 Journal Article Grey matter volume differences across Parkinson's disease motor subtypes in the supplementary motor cortexMartin, A., Nassif, J., Chaluvadi, L., Schammel, C., Newman-Norlund, R., Bollmann, S. and Absher, J. (2025). Grey matter volume differences across Parkinson's disease motor subtypes in the supplementary motor cortex. NeuroImage: Clinical, 45 103724, 103724. doi: 10.1016/j.nicl.2024.103724 |
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2024 Journal Article VesselBoost: a Python toolbox for small blood vessel segmentation in human magnetic resonance angiography dataXu, Marshall, Ribeiro, Fernanda L., Barth, Markus, Bernier, Michaël, Bollmann, Steffen, Chatterjee, Soumick, Cognolato, Francesco, Gulban, Omer F., Itkyal, Vaibhavi, Liu, Siyu, Mattern, Hendrik, Polimeni, Jonathan R., Shaw, Thomas B., Speck, Oliver and Bollmann, Saskia (2024). VesselBoost: a Python toolbox for small blood vessel segmentation in human magnetic resonance angiography data. Aperture Neuro, 4, 1-13. doi: 10.52294/001c.123217 |
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2024 Journal Article Three-dimensional EPI with shot-selective CAIPIRIHANA for rapid high-resolution quantitative susceptibility mapping at 3 TTourell, Monique, Jin, Jin, Bachrata, Beata, Stewart, Ashley, Ropele, Stefan, Enzinger, Christian, Bollmann, Saskia, Bollmann, Steffen, Robinson, Simon Daniel, O'Brien, Kieran and Barth, Markus (2024). Three-dimensional EPI with shot-selective CAIPIRIHANA for rapid high-resolution quantitative susceptibility mapping at 3 T. Magnetic Resonance in Medicine, 92 (3), 997-1010. doi: 10.1002/mrm.30101 |
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2024 Journal Article Large‐scale analysis of structural brain asymmetries during neurodevelopment: associations with age and sex in 4265 children and adolescentsKurth, F., Schijven, D., van den Heuvel, O. A., Hoogman, M., van Rooij, D., Stein, D. J., Buitelaar, J. K., Bölte, S., Auzias, G., Kushki, A., Venkatasubramanian, G., Rubia, K., Bollmann, S., Isaksson, J., Jaspers‐Fayer, F., Marsh, R., Batistuzzo, M. C., Arnold, P. D., Bressan, R. A., Stewart, S. E., Gruner, P., Sorensen, L., Pan, P. M., Silk, T. J., Gur, R. C., Cubillo, A. I., Haavik, J., O'Gorman Tuura, R. L., Hartman, C. A. ... Luders, E. (2024). Large‐scale analysis of structural brain asymmetries during neurodevelopment: associations with age and sex in 4265 children and adolescents. Human Brain Mapping, 45 (11) e26754, e26754. doi: 10.1002/hbm.26754 |
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2024 Journal Article Author Correction: brainlife.io: a decentralized and open-source cloud platform to support neuroscience researchHayashi, Soichi, Caron, Bradley A., Heinsfeld, Anibal Sólon, Vinci-Booher, Sophia, McPherson, Brent, Bullock, Daniel N., Bertò, Giulia, Niso, Guiomar, Hanekamp, Sandra, Levitas, Daniel, Ray, Kimberly, MacKenzie, Anne, Avesani, Paolo, Kitchell, Lindsey, Leong, Josiah K., Nascimento-Silva, Filipi, Koudoro, Serge, Willis, Hanna, Jolly, Jasleen K., Pisner, Derek, Zuidema, Taylor R., Kurzawski, Jan W., Mikellidou, Kyriaki, Bussalb, Aurore, Chaumon, Maximilien, George, Nathalie, Rorden, Christopher, Victory, Conner, Bhatia, Dheeraj ... Pestilli, Franco (2024). Author Correction: brainlife.io: a decentralized and open-source cloud platform to support neuroscience research. Nature Methods, 21 (6), 1131-1131. doi: 10.1038/s41592-024-02296-5 |
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2024 Journal Article Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimagingRenton, Angela I., Dao, Thuy T., Johnstone, Tom, Civier, Oren, Sullivan, Ryan P., White, David J., Lyons, Paris, Slade, Benjamin M., Abbott, David F., Amos, Toluwani J., Bollmann, Saskia, Botting, Andy, Campbell, Megan E. J., Chang, Jeryn, Close, Thomas G., Dörig, Monika, Eckstein, Korbinian, Egan, Gary F., Evas, Stefanie, Flandin, Guillaume, Garner, Kelly G., Garrido, Marta I., Ghosh, Satrajit S., Grignard, Martin, Halchenko, Yaroslav O., Hannan, Anthony J., Heinsfeld, Anibal S., Huber, Laurentius, Hughes, Matthew E. ... Bollmann, Steffen (2024). Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature Methods, 21 (2), 804-808. doi: 10.1038/s41592-023-02145-x |
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2024 Journal Article brainlife.io: a decentralized and open-source cloud platform to support neuroscience researchHayashi, Soichi, Caron, Bradley A., Heinsfeld, Anibal Sólon, Vinci-Booher, Sophia, McPherson, Brent, Bullock, Daniel N., Bertò, Giulia, Niso, Guiomar, Hanekamp, Sandra, Levitas, Daniel, Ray, Kimberly, MacKenzie, Anne, Avesani, Paolo, Kitchell, Lindsey, Leong, Josiah K., Nascimento-Silva, Filipi, Koudoro, Serge, Willis, Hanna, Jolly, Jasleen K., Pisner, Derek, Zuidema, Taylor R., Kurzawski, Jan W., Mikellidou, Kyriaki, Bussalb, Aurore, Chaumon, Maximilien, George, Nathalie, Rorden, Christopher, Victory, Conner, Bhatia, Dheeraj ... Pestilli, Franco (2024). brainlife.io: a decentralized and open-source cloud platform to support neuroscience research. Nature Methods, 21 (5), 809-813. doi: 10.1038/s41592-024-02237-2 |
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2024 Journal Article Adiposity associates with lower plasma resolvin E1 (Rve1): a population studyBarden, Anne, Shinde, Sujata, Beilin, Lawrence J., Phillips, Michael, Adams, Leon, Bollmann, Steffen and Mori, Trevor A. (2024). Adiposity associates with lower plasma resolvin E1 (Rve1): a population study. International Journal of Obesity, 48 (5), 725-732. doi: 10.1038/s41366-024-01482-x |
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2024 Journal Article Improving quantitative susceptibility mapping for the identification of traumatic brain injury neurodegeneration at the individual levelDomínguez D, Juan F, Stewart, Ashley, Burmester, Alex, Akhlaghi, Hamed, O'Brien, Kieran, Bollmann, Steffen and Caeyenberghs, Karen (2024). Improving quantitative susceptibility mapping for the identification of traumatic brain injury neurodegeneration at the individual level. Zeitschrift für Medizinische Physik. doi: 10.1016/j.zemedi.2024.01.001 |
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2023 Journal Article Super-resolution QSM in little or No Additional Time for Imaging (NATIve) using 2D EPI imaging in 3 orthogonal planesBachrata, Beata, Bollmann, Steffen, Jin, Jin, Tourell, Monique, Dal-Bianco, Assunta, Trattnig, Siegfried, Barth, Markus, Ropele, Stefan, Enzinger, Christian and Robinson, Simon Daniel (2023). Super-resolution QSM in little or No Additional Time for Imaging (NATIve) using 2D EPI imaging in 3 orthogonal planes. NeuroImage, 283 120419, 1-17. doi: 10.1016/j.neuroimage.2023.120419 |
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2023 Journal Article Improved dynamic distortion correction for fMRI using single‐echo EPI and a readout‐reversed first image (REFILL)Robinson, Simon Daniel, Bachrata, Beata, Eckstein, Korbinian, Bollmann, Saskia, Bollmann, Steffen, Dymerska, Barbara, Hodono, Shota, Cloos, Martijn, Tourell, Monique, Jin, Jin, O'Brien, Kieran, Reutens, David C., Trattnig, Siegfried, Enzinger, Christian and Barth, Markus (2023). Improved dynamic distortion correction for fMRI using single‐echo EPI and a readout‐reversed first image (REFILL). Human Brain Mapping, 44 (15), 5095-5112. doi: 10.1002/hbm.26440 |
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2023 Journal Article Variability of visual field maps in human early extrastriate cortex challenges the canonical model of organization of V2 and V3Ribeiro, Fernanda Lenita, York, Ashley, Zavitz, Elizabeth, Bollmann, Steffen, Rosa, Marcello GP and Puckett, Alexander (2023). Variability of visual field maps in human early extrastriate cortex challenges the canonical model of organization of V2 and V3. eLife, 12, 12. doi: 10.7554/elife.86439 |
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2023 Journal Article Variability of visual field maps in human early extrastriate cortex challenges the canonical model of organization of V2 and V3Lenita Ribeiro, Fernanda, York, Ashley, Zavitz, Elizabeth, Bollmann, Steffen, Rosa, Marcello G.P. and Puckett, Alexander (2023). Variability of visual field maps in human early extrastriate cortex challenges the canonical model of organization of V2 and V3. eLife e86439. doi: 10.7554/eLife.86439 |
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2023 Journal Article NeXtQSM—A complete deep learning pipeline for data-consistent Quantitative Susceptibility Mapping trained with hybrid dataCognolato, Francesco, O’Brien, Kieran, Jin, Jin, Robinson, Simon, Laun, Frederik B., Barth, Markus and Bollmann, Steffen (2023). NeXtQSM—A complete deep learning pipeline for data-consistent Quantitative Susceptibility Mapping trained with hybrid data. Medical Image Analysis, 84 102700, 102700. doi: 10.1016/j.media.2022.102700 |
