|
2025 Journal Article Democratizing open neuroimaging: Neurodesk’s approach to open data accessibility and utilizationDao, Thuy T., Masson-Trottier, Michèle, Ribeiro, Fernanda L., Scarsbrook, Joshua, Stewart, Ashley, Ye, Xincheng, Hamilton, Edan, Bollmann, Steffen and Narayanan, Aswin (2025). Democratizing open neuroimaging: Neurodesk’s approach to open data accessibility and utilization. Aperture Neuro, 5 (SI 2). doi: 10.52294/001c.144107 |
|
2025 Journal Article Toward the future of scientific publishing through reproducible research artefacts enabled by NeurodeskMasson-Trottier, Michèle, Dao, Thuy T., Narayanan, Aswin and Bollmann, Steffen (2025). Toward the future of scientific publishing through reproducible research artefacts enabled by Neurodesk. Aperture Neuro, 5 (SI 3), 1-12. doi: 10.52294/001c.143700 |
|
2025 Journal Article MRI-Derived Markers of Acute and Chronic Inflammatory Processes in the VTA Associated with DepressionKhalife, Sarah, Bollmann, Steffen, Zalesky, Andrew and Oestreich, Lena K. L. (2025). MRI-Derived Markers of Acute and Chronic Inflammatory Processes in the VTA Associated with Depression. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging. doi: 10.1016/j.bpsc.2025.09.003 |
|
2025 Journal Article Segmentation of the human tongue musculature using MRI: Field guide and validation in motor neuron diseaseShaw, Thomas B., Ribeiro, Fernanda L., Zhu, Xiangyun, Aiken, Patrick, Bollmann, Saskia, Bollmann, Steffen, Chang, Jeryn, Chidley, Kali, Dempsey-Jones, Harriet, Eftekhari, Zeinab, Gillespie, Jennifer, Henderson, Robert D., Kiernan, Matthew C., Ktena, Ira, McCombe, Pamela A., Ngo, Shyuan T., Taubert, Shana T., Whelan, Brooke-Mai, Ye, Xincheng, Steyn, Frederik J., Tu, Sicong and Barth, Markus (2025). Segmentation of the human tongue musculature using MRI: Field guide and validation in motor neuron disease. Computers in Biology and Medicine, 196 (Part B) 110824, 1-13. doi: 10.1016/j.compbiomed.2025.110824 |
|
2025 Journal Article Generalized learning induced by training and tDCS is predicted by prefrontal cortical morphologyEhrhardt, Shane E., Wards, Yohan, Shaw, Thomas B., Garner, Kelly G., Bollmann, Steffen, Mattingley, Jason B., Dux, Paul E. and Filmer, Hannah L. (2025). Generalized learning induced by training and tDCS is predicted by prefrontal cortical morphology. Cerebral Cortex, 35 (8) bhaf229. doi: 10.1093/cercor/bhaf229 |
|
2025 Journal Article An annotated multi-site and multi-contrast magnetic resonance imaging dataset for the study of the human tongue musculatureRibeiro, Fernanda L., Zhu, Xiangyun, Ye, Xincheng, Tu, Sicong, Ngo, Shyuan T., Henderson, Robert D., Steyn, Frederik J., Kiernan, Matthew C., Barth, Markus, Bollmann, Steffen and Shaw, Thomas B. (2025). An annotated multi-site and multi-contrast magnetic resonance imaging dataset for the study of the human tongue musculature. Scientific Data, 12 (1) 790, 790. doi: 10.1038/s41597-025-05092-8 |
|
2025 Conference Publication Modality-specific strategies for medical image segmentation using lightweight SAM architecturesDao, Thuy, Ye, Xincheng, Scarsbrook, Joshua, Balarupan, Gowrienanthan, Ribeiro, Fernanda L. and Bollmann, Steffen (2025). Modality-specific strategies for medical image segmentation using lightweight SAM architectures. MedSAM on Laptop 2024, Held in Conjunction with CVPR 2024, Seattle, WA USA, 17-21 June 2024. Cham, Switzerland: Springer Cham. doi: 10.1007/978-3-031-81854-7_15 |
|
2025 Journal Article Grey matter volume differences across Parkinson's disease motor subtypes in the supplementary motor cortexMartin, A., Nassif, J., Chaluvadi, L., Schammel, C., Newman-Norlund, R., Bollmann, S. and Absher, J. (2025). Grey matter volume differences across Parkinson's disease motor subtypes in the supplementary motor cortex. NeuroImage: Clinical, 45 103724, 103724. doi: 10.1016/j.nicl.2024.103724 |
|
2024 Conference Publication Building a Comprehensive Toolkit for Human Visual Cortex ParcellationRibeiro, Fernanda L., Bambridge-Lozan, Torin, Benson, Noah C., Schwarzkopf, D. Samuel, Puckett, Alexander M. and Bollmann, Steffen (2024). Building a Comprehensive Toolkit for Human Visual Cortex Parcellation. Vision Sciences Society Annual Meeting 2024, St. Pete Beach, FL United States, 17-22 May 2024. Rockville, MD United States: Association for Research in Vision and Ophthalmology. doi: 10.1167/jov.24.10.691 |
|
2024 Journal Article VesselBoost: a Python toolbox for small blood vessel segmentation in human magnetic resonance angiography dataXu, Marshall, Ribeiro, Fernanda L., Barth, Markus, Bernier, Michaël, Bollmann, Steffen, Chatterjee, Soumick, Cognolato, Francesco, Gulban, Omer F., Itkyal, Vaibhavi, Liu, Siyu, Mattern, Hendrik, Polimeni, Jonathan R., Shaw, Thomas B., Speck, Oliver and Bollmann, Saskia (2024). VesselBoost: a Python toolbox for small blood vessel segmentation in human magnetic resonance angiography data. Aperture Neuro, 4, 1-13. doi: 10.52294/001c.123217 |
|
2024 Journal Article Three-dimensional EPI with shot-selective CAIPIRIHANA for rapid high-resolution quantitative susceptibility mapping at 3 TTourell, Monique, Jin, Jin, Bachrata, Beata, Stewart, Ashley, Ropele, Stefan, Enzinger, Christian, Bollmann, Saskia, Bollmann, Steffen, Robinson, Simon Daniel, O'Brien, Kieran and Barth, Markus (2024). Three-dimensional EPI with shot-selective CAIPIRIHANA for rapid high-resolution quantitative susceptibility mapping at 3 T. Magnetic Resonance in Medicine, 92 (3), 997-1010. doi: 10.1002/mrm.30101 |
|
2024 Journal Article Large‐scale analysis of structural brain asymmetries during neurodevelopment: associations with age and sex in 4265 children and adolescentsKurth, F., Schijven, D., van den Heuvel, O. A., Hoogman, M., van Rooij, D., Stein, D. J., Buitelaar, J. K., Bölte, S., Auzias, G., Kushki, A., Venkatasubramanian, G., Rubia, K., Bollmann, S., Isaksson, J., Jaspers‐Fayer, F., Marsh, R., Batistuzzo, M. C., Arnold, P. D., Bressan, R. A., Stewart, S. E., Gruner, P., Sorensen, L., Pan, P. M., Silk, T. J., Gur, R. C., Cubillo, A. I., Haavik, J., O'Gorman Tuura, R. L., Hartman, C. A. ... Luders, E. (2024). Large‐scale analysis of structural brain asymmetries during neurodevelopment: associations with age and sex in 4265 children and adolescents. Human Brain Mapping, 45 (11) e26754, e26754. doi: 10.1002/hbm.26754 |
|
2024 Conference Publication Aberrations in the Ventral Tegmental Area predict depression severity in the general populationKhalife, Sarah, Oestreich, Lena, Bollmann, Steffen and Zalesky, Andrew (2024). Aberrations in the Ventral Tegmental Area predict depression severity in the general population. Organization for Human Brain Mapping, Seoul, South Korea, 23-27 June 2024. |
|
2024 Journal Article Author Correction: brainlife.io: a decentralized and open-source cloud platform to support neuroscience researchHayashi, Soichi, Caron, Bradley A., Heinsfeld, Anibal Sólon, Vinci-Booher, Sophia, McPherson, Brent, Bullock, Daniel N., Bertò, Giulia, Niso, Guiomar, Hanekamp, Sandra, Levitas, Daniel, Ray, Kimberly, MacKenzie, Anne, Avesani, Paolo, Kitchell, Lindsey, Leong, Josiah K., Nascimento-Silva, Filipi, Koudoro, Serge, Willis, Hanna, Jolly, Jasleen K., Pisner, Derek, Zuidema, Taylor R., Kurzawski, Jan W., Mikellidou, Kyriaki, Bussalb, Aurore, Chaumon, Maximilien, George, Nathalie, Rorden, Christopher, Victory, Conner, Bhatia, Dheeraj ... Pestilli, Franco (2024). Author Correction: brainlife.io: a decentralized and open-source cloud platform to support neuroscience research. Nature Methods, 21 (6), 1131-1131. doi: 10.1038/s41592-024-02296-5 |
|
2024 Journal Article Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimagingRenton, Angela I., Dao, Thuy T., Johnstone, Tom, Civier, Oren, Sullivan, Ryan P., White, David J., Lyons, Paris, Slade, Benjamin M., Abbott, David F., Amos, Toluwani J., Bollmann, Saskia, Botting, Andy, Campbell, Megan E. J., Chang, Jeryn, Close, Thomas G., Dörig, Monika, Eckstein, Korbinian, Egan, Gary F., Evas, Stefanie, Flandin, Guillaume, Garner, Kelly G., Garrido, Marta I., Ghosh, Satrajit S., Grignard, Martin, Halchenko, Yaroslav O., Hannan, Anthony J., Heinsfeld, Anibal S., Huber, Laurentius, Hughes, Matthew E. ... Bollmann, Steffen (2024). Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature Methods, 21 (2), 804-808. doi: 10.1038/s41592-023-02145-x |
|
2024 Journal Article brainlife.io: a decentralized and open-source cloud platform to support neuroscience researchHayashi, Soichi, Caron, Bradley A., Heinsfeld, Anibal Sólon, Vinci-Booher, Sophia, McPherson, Brent, Bullock, Daniel N., Bertò, Giulia, Niso, Guiomar, Hanekamp, Sandra, Levitas, Daniel, Ray, Kimberly, MacKenzie, Anne, Avesani, Paolo, Kitchell, Lindsey, Leong, Josiah K., Nascimento-Silva, Filipi, Koudoro, Serge, Willis, Hanna, Jolly, Jasleen K., Pisner, Derek, Zuidema, Taylor R., Kurzawski, Jan W., Mikellidou, Kyriaki, Bussalb, Aurore, Chaumon, Maximilien, George, Nathalie, Rorden, Christopher, Victory, Conner, Bhatia, Dheeraj ... Pestilli, Franco (2024). brainlife.io: a decentralized and open-source cloud platform to support neuroscience research. Nature Methods, 21 (5), 809-813. doi: 10.1038/s41592-024-02237-2 |
|
2024 Journal Article Adiposity associates with lower plasma resolvin E1 (Rve1): a population studyBarden, Anne, Shinde, Sujata, Beilin, Lawrence J., Phillips, Michael, Adams, Leon, Bollmann, Steffen and Mori, Trevor A. (2024). Adiposity associates with lower plasma resolvin E1 (Rve1): a population study. International Journal of Obesity, 48 (5), 725-732. doi: 10.1038/s41366-024-01482-x |
|
2024 Journal Article Improving quantitative susceptibility mapping for the identification of traumatic brain injury neurodegeneration at the individual levelDomínguez D, Juan F, Stewart, Ashley, Burmester, Alex, Akhlaghi, Hamed, O'Brien, Kieran, Bollmann, Steffen and Caeyenberghs, Karen (2024). Improving quantitative susceptibility mapping for the identification of traumatic brain injury neurodegeneration at the individual level. Zeitschrift für Medizinische Physik. doi: 10.1016/j.zemedi.2024.01.001 |
|
2024 Conference Publication Computationally efficient multi-echo QSMEckstein, Korbinian, Dao, Thanh, Stewart, Ashley, Robinson, Simon, Barth, Markus and Bollmann, Steffen (2024). Computationally efficient multi-echo QSM. 2023 ISMRM & ISMRT Annual Meeting & Exhibition, Toronto, ON, Canada, 3-8 June 2023. Berkeley, CA, United States: International Society for Magnetic Resonance in Medicine. doi: 10.58530/2023/4184 |
|
2024 Conference Publication Overcoming challenges of quantitative susceptibility mapping in moderate-to-severe TBI patientsD., Juan Domínguez, Stewart, Ashley, Burmester, Alex, Akhlaghi, Hamed, O’Brien, Kieran, Bollmann, Steffen and Caeyenberghs, Karen (2024). Overcoming challenges of quantitative susceptibility mapping in moderate-to-severe TBI patients. 2024 ISMRM & ISMRT Annual Meeting, Singapore, 4-9 May 2024. Concord, CA United States: ISMRM. doi: 10.58530/2024/1622 |
