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2021 Journal Article Deep learning in magnetic resonance image reconstructionChandra, Shekhar S., Bran Lorenzana, Marlon, Liu, Xinwen, Liu, Siyu, Bollmann, Steffen and Crozier, Stuart (2021). Deep learning in magnetic resonance image reconstruction. Journal of Medical Imaging and Radiation Oncology, 65 (5) 1754-9485.13276, 564-577. doi: 10.1111/1754-9485.13276 |
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2021 Journal Article Brainhack: Developing a culture of open, inclusive, community-driven neuroscienceGau, Rémi, Noble, Stephanie, Heuer, Katja, Bottenhorn, Katherine L., Bilgin, Isil P., Yang, Yu-Fang, Huntenburg, Julia M., Bayer, Johanna M.M., Bethlehem, Richard A.I., Rhoads, Shawn A., Vogelbacher, Christoph, Borghesani, Valentina, Levitis, Elizabeth, Wang, Hao-Ting, Van Den Bossche, Sofie, Kobeleva, Xenia, Legarreta, Jon Haitz, Guay, Samuel, Atay, Selim Melvin, Varoquaux, Gael P., Huijser, Dorien C., Sandström, Malin S., Herholz, Peer, Nastase, Samuel A., Badhwar, AmanPreet, Dumas, Guillaume, Schwab, Simon, Moia, Stefano, Dayan, Michael ... Zuo, Xi-Nian (2021). Brainhack: Developing a culture of open, inclusive, community-driven neuroscience. Neuron, 109 (11), 1769-1775. doi: 10.1016/j.neuron.2021.04.001 |
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2021 Conference Publication Submillimeter, aub-minute quantitative susceptibility mapping using a multi-shot 3D-EPI with 2D CAIPIRINHA accelerationTourell, Monique, Jin, Jin, Stewart, Ashley, Bollmann, Saskia, Bollmann, Steffen, Robinson, Simon, O'Brien, Kieran and Barth, Markus (2021). Submillimeter, aub-minute quantitative susceptibility mapping using a multi-shot 3D-EPI with 2D CAIPIRINHA acceleration. ISMRM 2021, Online, 15-20 May 2021. Concord, CA United States: International Society for Magnetic Resonance in Medicine. |
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2021 Conference Publication QSMxT - a cross-platform, flexible, lightweight, and scalable processing pipeline for quantitative susceptibility mappingStewart, Ashley, Robinson, Simon Daniel, O'Brien, Kieran, Jin, Jin, Walls, Angela, Narayanan, Aswin, Barth, Markus and Bollmann, Steffen (2021). QSMxT - a cross-platform, flexible, lightweight, and scalable processing pipeline for quantitative susceptibility mapping. ISMRM 2021, Online, 15-21 May 2021. Concord, CA USA: International Society for Magnetic Resonance in Medicine. |
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2021 Conference Publication Robust masking techniques for multi-echo quantitative susceptibility mappingStewart, Ashley, Robinson, Simon Daniel, O'Brien, Kieran, Jin, Jin, Widhalm, Georg, Hangel, Gilbert, Walls, Angela, Goodwin, Jonathan, Eckstein, Korbinian, Barth, Markus and Bollmann, Steffen (2021). Robust masking techniques for multi-echo quantitative susceptibility mapping. ISMRM 2021, Online, 15-20 May 2021. Concord, CA United States: International Society for Magnetic Resonance in Medicine. |
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2021 Journal Article Improving FLAIR SAR efficiency at 7T by adaptive tailoring of adiabatic pulse power through deep learning estimationAbbasi‐Rad, Shahrokh, O’Brien, Kieran, Kelly, Samuel, Vegh, Viktor, Rodell, Anders, Tesiram, Yasvir, Jin, Jin, Barth, Markus and Bollmann, Steffen (2021). Improving FLAIR SAR efficiency at 7T by adaptive tailoring of adiabatic pulse power through deep learning estimation. Magnetic Resonance in Medicine, 85 (5), 2462-2476. doi: 10.1002/mrm.28590 |
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2020 Journal Article MRI phase offset correction method impacts quantitative susceptibility mappingAbdulla, Shaeez Usman, Reutens, David, Bollmann, Steffen and Vegh, Viktor (2020). MRI phase offset correction method impacts quantitative susceptibility mapping. Magnetic Resonance Imaging, 74, 139-151. doi: 10.1016/j.mri.2020.08.009 |
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2020 Journal Article Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using multi-contrast MRIShaw, Thomas, York, Ashley, Ziaei, Maryam, Barth, Markus and Bollmann, Steffen (2020). Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using multi-contrast MRI. NeuroImage, 218 116798, 116798. doi: 10.1016/j.neuroimage.2020.116798 |
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2020 Journal Article Towards optimising MRI characterisation of Tissue (TOMCAT) dataset including all Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) dataShaw, Thomas, York, Ashley, Barth, Markus and Bollmann, Steffen (2020). Towards optimising MRI characterisation of Tissue (TOMCAT) dataset including all Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) data. Data in Brief, 32 106043, 106043. doi: 10.1016/j.dib.2020.106043 |
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2020 Journal Article Influence of 7T GRE-MRI signal compartment model choice on tissue parametersThapaliya, Kiran, Vegh, Viktor, Bollmann, Steffen and Barth, Markus (2020). Influence of 7T GRE-MRI signal compartment model choice on tissue parameters. Frontiers in Neuroscience, 14 271, 271. doi: 10.3389/fnins.2020.00271 |
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2020 Journal Article Overview of quantitative susceptibility mapping using deep learning: current status, challenges and opportunitiesJung, Woojin, Bollmann, Steffen and Lee, Jongho (2020). Overview of quantitative susceptibility mapping using deep learning: current status, challenges and opportunities. NMR in Biomedicine, 35 (4) e4292, e4292. doi: 10.1002/nbm.4292 |
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2020 Journal Article Functional connectivity of the irritative zone identified by electrical source imaging, and EEG-correlated fMRI analysesUrriola, Javier, Bollmann, Steffen, Tremayne, Fred, Burianová, Hana, Marstaller, Lars and Reutens, David (2020). Functional connectivity of the irritative zone identified by electrical source imaging, and EEG-correlated fMRI analyses. NeuroImage: Clinical, 28 102440, 102440. doi: 10.1016/j.nicl.2020.102440 |
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2019 Journal Article Non-linear realignment improves hippocampus subfield segmentation reliabilityShaw, Thomas B., Bollmann, Steffen, Atcheson, Nicole T., Strike, Lachlan T., Guo, Christine, McMahon, Katie L., Fripp, Jurgen, Wright, Margaret J., Salvado, Olivier and Barth, Markus (2019). Non-linear realignment improves hippocampus subfield segmentation reliability. NeuroImage, 203 116206, 116206. doi: 10.1016/j.neuroimage.2019.116206 |
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2019 Journal Article 7T GRE-MRI signal compartments are sensitive to dysplastic tissue in focal epilepsyThapaliya, Kiran, Urriola, Javier, Barth, Markus, Reutens, David C., Bollmann, Steffen and Vegh, Viktor (2019). 7T GRE-MRI signal compartments are sensitive to dysplastic tissue in focal epilepsy. Magnetic Resonance Imaging, 61, 1-8. doi: 10.1016/j.mri.2019.05.011 |
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2019 Journal Article DeepQSM - using deep learning to solve the dipole inversion for quantitative susceptibility mappingBollmann, Steffen, Rasmussen, Kasper Gade Bøtker, Kristensen, Mads, Blendal, Rasmus Guldhammer, Østergaard, Lasse Riis, Plocharski, Maciej, O'Brien, Kieran, Langkammer, Christian, Janke, Andrew and Barth, Markus (2019). DeepQSM - using deep learning to solve the dipole inversion for quantitative susceptibility mapping. NeuroImage, 195, 373-383. doi: 10.1016/j.neuroimage.2019.03.060 |
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2019 Conference Publication Quantitative susceptibility mapping for routine clinical use – an inline automated QSM reconstruction pipelineStewart, Ashley, O'Brien, Kieran, Kim, Jinsuh, Maréchal, Bénédicte, Nasrallah, Fatima, Kean, Michael, Barth, Markus and Bollmann, Steffen (2019). Quantitative susceptibility mapping for routine clinical use – an inline automated QSM reconstruction pipeline. ISMRM 2019, Montreal, Canada, 11-16 May 2019. Concord, CA United States: International Society for Magnetic Resonance in Medicine. |
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2019 Journal Article SHARQnet – Sophisticated harmonic artifact reduction in quantitative susceptibility mapping using a deep convolutional neural networkBollmann, Steffen, Kristensen, Matilde Holm, Larsen, Morten Skaarup, Olsen, Mathias Vassard, Pedersen, Mads Jozwiak, Østergaard, Lasse Riis, O’Brien, Kieran, Langkammer, Christian, Fazlollahi, Amir and Barth, Markus (2019). SHARQnet – Sophisticated harmonic artifact reduction in quantitative susceptibility mapping using a deep convolutional neural network. Zeitschrift für Medizinische Physik, 29 (2), 139-149. doi: 10.1016/j.zemedi.2019.01.001 |
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2018 Conference Publication Myelin water fraction across the corpus callosum using multi-echo gradient echo at 7T - influence of model settings and flip angleThapaliya, Kiran, Vegh, Viktor, Bollmann, Steffen and Barth, Markus (2018). Myelin water fraction across the corpus callosum using multi-echo gradient echo at 7T - influence of model settings and flip angle. ISMRM, Paris, France, 16-21 June 2018. |
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2018 Conference Publication 7T GRE-MRI frequency shifts obtained from signal compartments can differentiate normal from dysplastic tissue in focal epilepsyThapaliya, Kiran, Barth, Markus, Bollmann, Steffen, Reutens, David and Vegh, Viktor (2018). 7T GRE-MRI frequency shifts obtained from signal compartments can differentiate normal from dysplastic tissue in focal epilepsy. ISMRM, Paris, France, 16-21 June 2018. |
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2018 Conference Publication Improving FLAIR SAR efficiency by predicting B1-maps at 7T from a standard localizer scan using deep convolutional neural networksBollmann, Steffen, Kelly, Samuel, Vegh, Viktor, Rodell, Anders, Tesiram, Yas, Barth, Markus and O'Brien, Kieran (2018). Improving FLAIR SAR efficiency by predicting B1-maps at 7T from a standard localizer scan using deep convolutional neural networks. ISMRM, Paris, France, 17-21 June 2018. |
