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2024 Journal Article The impacts of positive selection on genomic variation in Drosophila serrata: insights from a deep learning approachWang, Yiguan, Allen, Scott L., Reddiex, Adam J. and Chenoweth, Stephen F. (2024). The impacts of positive selection on genomic variation in Drosophila serrata: insights from a deep learning approach. Molecular Ecology, 33 (18) e17499. doi: 10.1111/mec.17499 |
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2024 Journal Article Genetic and geographic population structure in the malaria vector, Anopheles farauti, provides a candidate system for pioneering confinable gene-drive releasesAmbrose, Luke, Allen, Scott L., Iro’ofa, Charlie, Butafa, Charles and Beebe, Nigel W. (2024). Genetic and geographic population structure in the malaria vector, Anopheles farauti, provides a candidate system for pioneering confinable gene-drive releases. Heredity, 132 (5), 1-15. doi: 10.1038/s41437-024-00677-2 |
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2023 Journal Article Dengue and chikungunya virus loads in the mosquito Aedes aegypti are determined by distinct genetic architecturesNovelo, Mario, Dutra, Heverton LC, Metz, Hillery C., Jones, Matthew J., Sigle, Leah T., Frentiu, Francesca D., Allen, Scott L., Chenoweth, Stephen F. and McGraw, Elizabeth A. (2023). Dengue and chikungunya virus loads in the mosquito Aedes aegypti are determined by distinct genetic architectures. PLoS Pathogens, 19 (4) e1011307, e1011307. doi: 10.1371/journal.ppat.1011307 |
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2022 Journal Article Maintenance of quantitative genetic variance in complex, multitrait phenotypes: the contribution of rare, large effect variants in 2 Drosophila speciesHine, Emma, Runcie, Daniel E., Allen, Scott L., Wang, Yiguan, Chenoweth, Stephen F., Blows, Mark W. and McGuigan, Katrina (2022). Maintenance of quantitative genetic variance in complex, multitrait phenotypes: the contribution of rare, large effect variants in 2 Drosophila species. Genetics, 222 (2) iyac122, 1-17. doi: 10.1093/genetics/iyac122 |
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2022 Journal Article Natural variation at a single gene generates sexual antagonism across fitness components in DrosophilaRusuwa, Bosco B., Chung, Henry, Allen, Scott L., Frentiu, Francesca D. and Chenoweth, Stephen F. (2022). Natural variation at a single gene generates sexual antagonism across fitness components in Drosophila. Current Biology, 32 (14), 3161-3169.e7. doi: 10.1016/j.cub.2022.05.038 |
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2021 Journal Article Adaptive divergence in shoot gravitropism creates hybrid sterility in an Australian wildflowerWilkinson, Melanie J., Roda, Federico, Walter, Greg M., James, Maddie E., Nipper, Rick, Walsh, Jessica, Allen, Scott L., North, Henry L., Beveridge, Christine A. and Ortiz-Barrientos, Daniel (2021). Adaptive divergence in shoot gravitropism creates hybrid sterility in an Australian wildflower. Proceedings of the National Academy of Sciences, 118 (47) e2004901118, e2004901118. doi: 10.1073/pnas.2004901118 |
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2021 Journal Article The impact of artificial selection for Wolbachia-mediated dengue virus blocking on phage WODutra, Heverton L. C., Ford, Suzanne A., Allen, Scott L., Bordenstein, Sarah R., Chenoweth, Stephen F., Bordenstein, Seth R. and McGraw, Elizabeth A. (2021). The impact of artificial selection for Wolbachia-mediated dengue virus blocking on phage WO. PLoS Neglected Tropical Diseases, 15 (7) e0009637, e0009637. doi: 10.1371/journal.pntd.0009637 |
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2021 Journal Article Highly replicated evolution of parapatric ecotypesJames, Maddie E., Arenas-Castro, Henry, Groh, Jeffrey S., Allen, Scott L., Engelstädter, Jan and Ortiz-Barrientos, Daniel (2021). Highly replicated evolution of parapatric ecotypes. Molecular Biology and Evolution, 38 (11), 4805-4821. doi: 10.1093/molbev/msab207 |
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2020 Journal Article Artificial selection finds new hypotheses for the mechanism of Wolbachia-mediated dengue blocking in mosquitoesFord, Suzanne A., Albert, Istvan, Allen, Scott L., Chenoweth, Stephen F., Jones, Matthew, Koh, Cassandra, Sebastian, Aswathy, Sigle, Leah T. and McGraw, Elizabeth A. (2020). Artificial selection finds new hypotheses for the mechanism of Wolbachia-mediated dengue blocking in mosquitoes. Frontiers in Microbiology, 11 1456, 1456. doi: 10.3389/fmicb.2020.01456 |
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2019 Journal Article Selection on Aedes aegypti alters Wolbachia-mediated dengue virus blocking and fitnessFord, Suzanne A., Allen, Scott L., Ohm, Johanna R., Sigle, Leah T., Sebastian, Aswathy, Albert, Istvan, Chenoweth, Stephen F. and McGraw, Elizabeth A. (2019). Selection on Aedes aegypti alters Wolbachia-mediated dengue virus blocking and fitness. Nature Microbiology, 4 (11), 1832-1839. doi: 10.1038/s41564-019-0533-3 |
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2018 Journal Article The transcriptional response of Aedes aegypti with variable extrinsic incubation periods for dengue virusKoh, Cassandra, Allen, Scott L., Herbert, Rosemarie I., McGraw, Elizabeth A. and Chenoweth, Stephen F. (2018). The transcriptional response of Aedes aegypti with variable extrinsic incubation periods for dengue virus. Genome Biology and Evolution, 10 (12), 3141-3151. doi: 10.1093/gbe/evy230 |
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2018 Journal Article Genetic constraints on microevolutionary divergence of sex-biased gene expressionAllen, Scott L., Bonduriansky, Russell and Chenoweth, Stephen F. (2018). Genetic constraints on microevolutionary divergence of sex-biased gene expression. Philosophical Transactions of the Royal Society B: Biological Sciences, 373 (1757) 20170427, 20170427. doi: 10.1098/rstb.2017.0427 |
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2018 Journal Article Mutational pleiotropy and the strength of stabilizing selection within and between functional modules of gene expressionCollet, Julie M., McGuigan, Katrina, Allen, Scott L., Chenoweth, Stephen F. and Blows, Mark W. (2018). Mutational pleiotropy and the strength of stabilizing selection within and between functional modules of gene expression. Genetics, 208 (4), 1601-1616. doi: 10.1534/genetics.118.300776 |
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2018 Journal Article A genomic reference panel for Drosophila serrataReddiex, Adam J., Allen, Scott L. and Chenoweth, Stephen F. (2018). A genomic reference panel for Drosophila serrata. G3: Genes, Genomes, Genetics, 8 (4), 1335-1346. doi: 10.1534/g3.117.300487 |
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2017 Journal Article Family level variation in Wolbachia-mediated dengue virus blocking in Aedes aegyptiTerradas, Gerard, Allen, Scott L., Chenoweth, Stephen F. and McGraw, Elizabeth A. (2017). Family level variation in Wolbachia-mediated dengue virus blocking in Aedes aegypti. Parasites and Vectors, 10 (1) 622, 1-12. doi: 10.1186/s13071-017-2589-3 |
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2017 Journal Article Sexual selection on spontaneous mutations strengthens the between-sex genetic correlation for fitnessAllen, Scott L., McGuigan, Katrina, Connallon, Tim, Blows, Mark W. and Chenoweth, Stephen F. (2017). Sexual selection on spontaneous mutations strengthens the between-sex genetic correlation for fitness. Evolution, 71 (10), 2398-2409. doi: 10.1111/evo.13310 |
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2017 Journal Article Single-molecule sequencing of the Drosophila serrata genomeAllen, Scott L., Delaney, Emily K., Kopp, Artyom and Chenoweth, Stephen F. (2017). Single-molecule sequencing of the Drosophila serrata genome. G3 , 7 (3), 781-788. doi: 10.1534/g3.116.037598 |
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2017 Journal Article Sex-biased transcriptome divergence along a latitudinal gradientAllen, Scott L. , Bonduriansky, Russell, Sgro, Carla M. and Chenoweth, Stephen F. (2017). Sex-biased transcriptome divergence along a latitudinal gradient. Molecular Ecology, 26 (5), 1256-1272. doi: 10.1111/mec.14015 |
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2016 Journal Article Evolutionary potential of the extrinsic incubation period of dengue virus in Aedes aegyptiYe, Yixin H., Chenoweth, Stephen F., Carrasco, Alison M., Allen, Scott L., Frentiu, Francesca D., van den Hurk, Andrew F., Beebe, Nigel W. and McGraw, Elizabeth A. (2016). Evolutionary potential of the extrinsic incubation period of dengue virus in Aedes aegypti. Evolution, 70 (11), 2459-2469. doi: 10.1111/evo.13039 |
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2015 Journal Article Genomic evidence that sexual selection impedes adaptation to a novel environmentChenoweth, Stephen F., Appleton, Nicholas C., Allen, Scott L. and Rundle, Howard D. (2015). Genomic evidence that sexual selection impedes adaptation to a novel environment. Current Biology, 25 (14), 1860-1866. doi: 10.1016/j.cub.2015.05.034 |
