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2025 Journal Article Changes in mucosal epithelia of marine Atlantic salmon (Salmo salar) under chronic heat stressSharifian, Maryam, English, Chloe J., Whitehead, Darryl L. and Barnes, Andrew C. (2025). Changes in mucosal epithelia of marine Atlantic salmon (Salmo salar) under chronic heat stress. Aquaculture, 598 742064, 742064. doi: 10.1016/j.aquaculture.2024.742064 |
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2024 Journal Article Extraction of high‐molecular‐weight DNA from <i>Streptococcus</i> spp. for nanopore sequencing in resource‐limited settingsDas, Suvra, Delamare‐Deboutteville, JérÔme, Barnes, Andrew C. and Rudenko, Oleksandra (2024). Extraction of high‐molecular‐weight DNA from Streptococcus spp. for nanopore sequencing in resource‐limited settings. MicrobiologyOpen, 13 (4) e1432, e1432. doi: 10.1002/mbo3.1432 |
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2024 Journal Article Introducing CRC SAAFE: a new Cooperative Research Centre (CRC) focused on managing AMR in agriculture and the environmentDonner, E., Soares Magalhães, R. J., Barnes, A. C., Jex, A., Jarocki, V., Drigo, B., Djordjevic, S. and Ashbolt, N. J. (2024). Introducing CRC SAAFE: a new Cooperative Research Centre (CRC) focused on managing AMR in agriculture and the environment. Microbiology Australia, 45 (2), 68-73. doi: 10.1071/ma24021 |
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2024 Journal Article The rise of the opportunists: What are the drivers of the increase in infectious diseases caused by environmental and commensal bacteria?Samsing, Francisca and Barnes, Andrew C. (2024). The rise of the opportunists: What are the drivers of the increase in infectious diseases caused by environmental and commensal bacteria?. Reviews in Aquaculture, 16 (4), 1787-1797. doi: 10.1111/raq.12922 |
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2024 Journal Article Serological and molecular typing of Tenacibaculum maritimum from New Zealand farmed salmon, Oncorhynchus tshawytschaKumanan, Karthiga, Delisle, Lizenn, Angelucci, Connie, Hunter, Ryan B.J., Rudenko, Oleksandra, Carson, Jeremy, Morrison, Richard N., Barnes, Andrew C. and Hutson, Kate S. (2024). Serological and molecular typing of Tenacibaculum maritimum from New Zealand farmed salmon, Oncorhynchus tshawytscha. Aquaculture, 578 740055, 1-13. doi: 10.1016/j.aquaculture.2023.740055 |
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2023 Journal Article Transforming the untransformable with knockout minicircles: high‐efficiency transformation and vector‐free allelic exchange knockout in the fish pathogen Photobacterium damselaeRudenko, Oleksandra, Baseggio, Laura, McGuigan, Fynn and Barnes, Andrew C. (2023). Transforming the untransformable with knockout minicircles: high‐efficiency transformation and vector‐free allelic exchange knockout in the fish pathogen Photobacterium damselae. MicrobiologyOpen, 12 (4) e1374, e1374. doi: 10.1002/mbo3.1374 |
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2023 Journal Article Biolayer interferometry is insufficiently sensitive for direct measurement of IgM quantity and avidity in Atlantic salmon (Salmo salar) serumEnglish, Chloe J., Li, Angus and Barnes, Andrew C. (2023). Biolayer interferometry is insufficiently sensitive for direct measurement of IgM quantity and avidity in Atlantic salmon (Salmo salar) serum. Fish and Shellfish Immunology, 134 108603, 108603. doi: 10.1016/j.fsi.2023.108603 |
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2023 Other Outputs Vaccination for emergency and long-term control of Betanodavirus in Australian marine aquacultureThwaite, Rosemary, Kawasaki, Minami, Li, Angus, Condon, Kelly, Knuckey, Richard, Cherrie, Bradley, White, Mark, Landos, Matt and Barnes, Andrew C. (2023). Vaccination for emergency and long-term control of Betanodavirus in Australian marine aquaculture. Brisbane, Australia: The University of Queensland; Fisheries Research and Development Corporation. doi: 10.14264/1444c70 |
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2023 Journal Article From the basics to emerging diagnostic technologies: what is on the horizon for tilapia disease diagnostics?Dong, Ha Thanh, Chaijarasphong, Thawatchai, Barnes, Andrew C., Delamare‐Deboutteville, Jérôme, Lee, Peiyu Alison, Senapin, Saengchan, Mohan, Chadag Vishnumurthy, Tang, Kathy F. J., McGladdery, Sharon E. and Bondad‐Reantaso, Melba G. (2023). From the basics to emerging diagnostic technologies: what is on the horizon for tilapia disease diagnostics?. Reviews in Aquaculture, 15 (S1), 186-212. doi: 10.1111/raq.12734 |
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2022 Journal Article Creating value from purple phototrophic bacteria via single-cell protein productionHülsen, Tim, Barnes, Andrew C., Batstone, Damien J. and Capson-Tojo, Gabriel (2022). Creating value from purple phototrophic bacteria via single-cell protein production. Current Opinion in Biotechnology, 76 102726, 102726. doi: 10.1016/j.copbio.2022.102726 |
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2022 Journal Article The evolution of a specialized, highly virulent fish pathogen through gene loss and acquisition of host-specific survival mechanismsBaseggio, Laura, Rudenko, Oleksandra, Engelstädter, Jan and Barnes, Andrew C. (2022). The evolution of a specialized, highly virulent fish pathogen through gene loss and acquisition of host-specific survival mechanisms. Applied and Environmental Microbiology, 88 (14) e0022222, 1-19. doi: 10.1128/aem.00222-22 |
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2022 Journal Article A high-quality reference genome for the fish pathogen Streptococcus iniaeAlsheikh-Hussain, Areej S., Ben Zakour, Nouri L., Forde, Brian M., Rudenko, Oleksandra, Barnes, Andrew C. and Beatson, Scott A. (2022). A high-quality reference genome for the fish pathogen Streptococcus iniae. Microbial Genomics, 8 (3) 000777. doi: 10.1099/mgen.0.000777 |
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2022 Journal Article Longitudinal field survey during deployment of an emergency autogenous vaccine against Betanodavirus in farmed giant grouper (Epinephelus lanceolatus): Multiple factors contribute to outbreaks and survivalThwaite, Rosemary, Li, Angus, Kawasaki, Minami, Lin, Chun-han, Stephens, Fran, Cherrie, Brad, Knuckey, Richard, Landos, Matt and Barnes, Andrew C. (2022). Longitudinal field survey during deployment of an emergency autogenous vaccine against Betanodavirus in farmed giant grouper (Epinephelus lanceolatus): Multiple factors contribute to outbreaks and survival. Aquaculture, 548 737599, 1-13. doi: 10.1016/j.aquaculture.2021.737599 |
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2022 Journal Article Biodiversity of the intestinal microbiota of black tiger prawn, Penaeus monodon, increases with age and is only transiently impacted by major ingredient replacement in the dietKawasaki, Minami, Lo, Ting Him Wallace, Lazzarotto, Viviana, Briggs, Matthew, Smullen, Richard P. and Barnes, Andrew C. (2022). Biodiversity of the intestinal microbiota of black tiger prawn, Penaeus monodon, increases with age and is only transiently impacted by major ingredient replacement in the diet. Aquaculture Reports, 22 100948, 100948. doi: 10.1016/j.aqrep.2021.100948 |
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2022 Journal Article Acidified fish feeds reduce the energetic and physiological costs of digestion in juvenile barramundi (Lates calcarifer)Goodrich, Harriet R., Wilson, Rod W., Smullen, Richard, Barnes, Andrew C. and Franklin, Craig E. (2022). Acidified fish feeds reduce the energetic and physiological costs of digestion in juvenile barramundi (Lates calcarifer). Aquaculture, 546 737400, 737400. doi: 10.1016/j.aquaculture.2021.737400 |
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2021 Journal Article A single-step, high throughput, and highly reproducible method for measuring IgM quantity and avidity directly from fish serum via biolayer interferometry (BLI)Li, Angus, Harris, Richard J., Fry, Bryan G. and Barnes, Andrew C. (2021). A single-step, high throughput, and highly reproducible method for measuring IgM quantity and avidity directly from fish serum via biolayer interferometry (BLI). Fish and Shellfish Immunology, 119, 231-237. doi: 10.1016/j.fsi.2021.10.003 |
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2021 Journal Article Autogenous vaccination in aquaculture: a locally enabled solution towards reduction of the global antimicrobial resistance problemBarnes, Andrew C., Rudenko, Oleksandra, Landos, Matt, Dong, Ha Thanh, Lusiastuti, Angela, Phuoc, Le Hong and Delamare‐Deboutteville, Jerome (2021). Autogenous vaccination in aquaculture: a locally enabled solution towards reduction of the global antimicrobial resistance problem. Reviews in Aquaculture, 14 (2), 907-918. doi: 10.1111/raq.12633 |
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2021 Journal Article Molecular investigation of recurrent Streptococcus iniae epizootics affecting coral reef fish on an oceanic island suggests at least two distinct emergence eventsIrion, Solène, Silayeva, Oleksandra, Sweet, Michael, Chabanet, Pascale, Barnes, Andrew C., Tortosa, Pablo and Séré, Mathieu G. (2021). Molecular investigation of recurrent Streptococcus iniae epizootics affecting coral reef fish on an oceanic island suggests at least two distinct emergence events. Frontiers in Microbiology, 12 749734, 749734. doi: 10.3389/fmicb.2021.749734 |
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2021 Journal Article Rapid genotyping of tilapia lake virus (TiLV) using Nanopore sequencingDelamare‐Deboutteville, Jerome, Taengphu, Suwimon, Gan, Han Ming, Kayansamruaj, Pattanapon, Debnath, Partho Pratim, Barnes, Andrew, Wilkinson, Shaun, Kawasaki, Minami, Vishnumurthy Mohan, Chadag, Senapin, Saengchan and Dong, Ha Thanh (2021). Rapid genotyping of tilapia lake virus (TiLV) using Nanopore sequencing. Journal of Fish Diseases, 44 (10) jfd.13467, 1491-1502. doi: 10.1111/jfd.13467 |
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2021 Journal Article Serum IgM heavy chain sub-isotypes and light chain variants revealed in giant grouper (Epinephelus lanceolatus) via protein A affinity purification, mass spectrometry and genome sequencingLi, Angus, Thwaite, Rosemary, Kellie, Stuart and Barnes, Andrew C. (2021). Serum IgM heavy chain sub-isotypes and light chain variants revealed in giant grouper (Epinephelus lanceolatus) via protein A affinity purification, mass spectrometry and genome sequencing. Fish and Shellfish Immunology, 113, 42-50. doi: 10.1016/j.fsi.2021.03.014 |
