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2010 Journal Article Complete genome sequence of Streptosporangium roseum type strain (NI 9100(T))Nolan, Matt, Sikorski, Johannes, Jando, Marlen, Lucas, Susan, Lapidus, Alla, Del Rio, Tijana Glavina, Chen, Feng, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Chertkov, Olga, Sims, David, Meincke, Linda, Brettin, Thomas, Han, Cliff, Detter, John C., Bruce, David, Goodwin, Lynne, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Rohde, Manfred ... Klenk, Hans-Peter (2010). Complete genome sequence of Streptosporangium roseum type strain (NI 9100(T)). Standards in Genomic Sciences, 2 (1), 29-37. doi: 10.4056/sigs.631049 |
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2010 Journal Article Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460(T))Kiss, Hajnalka, Lang, Elke, Lapidus, Alla, Copeland, Alex, Nolan, Matt, Del Rio, Tijana Glavina, Chen, Feng, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Brettin, Thomas, Spring, Stefan, Rohde, Manfred, Goeker, Markus, Woyke, Tanja ... Klenk, Hans-Peter (2010). Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460(T)). Standards in Genomic Sciences, 2 (3), 270-279. doi: 10.4056/sigs.892105 |
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2010 Journal Article Complete genome sequence of Sulfurimonas autotrophica type strain (OK10(T))Sikorski, Johannes, Munk, Christine, Lapidus, Alla, Djao, Olivier Duplex Ngatchou, Lucas, Susan, Del Rio, Tijana Glavina, Nolan, Matt, Tice, Hope, Han, Cliff, Cheng, Jan-Fang, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Sims, David, Meincke, Linda, Brettin, Thomas, Detter, John C., Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred ... Klenk, Hans-Peter (2010). Complete genome sequence of Sulfurimonas autotrophica type strain (OK10(T)). Standards in Genomic Sciences, 3 (2), 194-202. doi: 10.4056/sigs.1173118 |
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2010 Conference Publication Correlative TEM/FISH imaging of microbial communitiesKnierim, Bernhard, Wilmes, Paul, Webb, Rick I., McDonald, Kent, Comolli, Luis, Luef, Birgit, Downing, Kenneth H., Banfield, Jill, Hugenholtz, Phil, Liphardt, Jan and Auer, Manfred (2010). Correlative TEM/FISH imaging of microbial communities. Biophysical Society 54th Annual Meeting, San Francisco, CA United States, 20-24 February 2010. St. Louis, MO United States: Cell Press. doi: 10.1016/j.bpj.2009.12.3157 |
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2009 Journal Article A phylogeny-driven genomic encyclopaedia of Bacteria and ArchaeaWu, Dongying, Hugenholtz, Philip, Mavromatis, Konstantinos, Pukall, Ru¨diger, Dalin, Eileen, Ivanova, Natalia N., Kunin, Victor, Goodwin, Lynne, Wu, Martin, Tindall, Brian J., Hooper, Sean D., Pati, Amrita, Lykidis, Athanasios, Spring, Stefan, Anderson, Iain J., D'haeseleer, Patrik, Zemla, Adam, Singer, Mitchell, Lapidus, Alla, Nolan, Matt, Copeland, Alex, Han, Cliff, Chen, Feng, Cheng, Jan-Fang, Lucas, Susan, Kerfeld, Cheryl, Lang, Elke, Gronow, Sabine, Chain, Patrick ... Elsen, Jonathan A. (2009). A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature, 462 (7276), 1056-1060. doi: 10.1038/nature08656 |
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2009 Journal Article Complete genome sequence of Atopobium parvulum type strain (IPP 1246 T)Copeland, Alex, Sikorski, Johannes, Lapidus, Alla, Nolan, Matt, Del Rio, Tijana Glavina, Lucas, Susan, Chen, Feng, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Pukall, Rüdiger, Chertkov, Olga, Brettin, Thomas, Han, Cliff, Kuske, Cheryl, Bruce, David, Goodwin, Lynne, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Rohde, Manfred, Göker, Markus, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip ... Detter, John C. (2009). Complete genome sequence of Atopobium parvulum type strain (IPP 1246 T). Standards in Genomic Sciences, 1 (2), 166-173. doi: 10.4056/sigs.29547 |
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2009 Journal Article Complete genome sequence of anaerococcus prevotii type strain (PC1 T)Labutti, Kurt, Pukall, Rüdiger, Steenblock, Katja, Del Rio, Tijana Glavina, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Saunders, Elizabeth, Brettin, Thomas, Detter, John C., Han, Cliff, Göker, Markus ... Lapidus, Alla (2009). Complete genome sequence of anaerococcus prevotii type strain (PC1 T). Standards in Genomic Sciences, 1 (2), 159-165. doi: 10.4056/sigs.24194 |
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2009 Journal Article Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3 T)Han, Cliff, Spring, Stefan, Lapidus, Alla, del Rio, Tijana Glavina, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia C., Saunders, Elizabeth, Chertkov, Olga, Brettin, Thomas, Göker, Markus, Rohde, Manfred, Bristow, Jim ... Detter, John C. (2009). Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3 T). Standards in Genomic Sciences, 1 (1), 54-62. doi: 10.4056/sigs.22138 |
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2009 Journal Article Complete genome sequence of Rhodothermus marinus type strain (R-10 T)Nolan, Matt, Tindall, Brian J., Pomrenke, Helga, Lapidus, Alla, Copeland, Alex, del Rio, Tijana Glavina, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Saunders, Elizabeth, Han, Cliff, Bruce, David, Goodwin, Lynne, Chain, Patrick, Pitluck, Sam, Ovchinikova, Galina, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Göker, Markus, Bristow, James ... Detter, John C. (2009). Complete genome sequence of Rhodothermus marinus type strain (R-10 T). Standards in Genomic Sciences, 1 (3), 283-291. doi: 10.4056/sigs.46736 |
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2009 Journal Article The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadataLiolios, Konstantinos, Chen, I-Min A., Mavromatis, Konstantinos, Tavernarakis, Nektarios, Hugenholtz, Philip, Markowitz, Victor M. and Kyrpides, Nikos C. (2009). The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Research, 38 (Supp. 1) gkp848, D346-D354. doi: 10.1093/nar/gkp848 |
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2009 Journal Article ShotgunFunctionalizeR: An R-package for functional comparison of metagenomesKristiansson, Erik, Hugenholtz, Philip and Dalevi, Daniel (2009). ShotgunFunctionalizeR: An R-package for functional comparison of metagenomes. Bioinformatics, 25 (20), 2737-2738. doi: 10.1093/bioinformatics/btp508 |
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2009 Journal Article Genome project standards in a new era of sequencingChain, P. S. G., Grafham, D. V., Fulton, R. S., FitzGerald, M. G., Hostetler, J., Muzny, D., Ali, J., Birren, B., Bruce, D. C., Buhay, C., Cole, J. R., Ding, Y., Dugan, S., Field, D., Garrity, G. M., Gibbs, R., Graves, T., Han, C. S., Harrison, S. H., Highlander, S., Hugenholtz, P., Khouri, H. M., Kodira, C. D., Kolker, E., Kyrpides, N. C., Lang, D., Lapidus, A., Malfatti, S. A., Markowitz, V. ... Detter, J. C. (2009). Genome project standards in a new era of sequencing. Science, 326 (5950), 236-237. doi: 10.1126/science.1180614 |
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2009 Journal Article Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimatesKunin, Victor, Engelbrekston, Anna, Ochman, Howard and Hugenholtz, Philip (2009). Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environmental Microbiology, 12 (1), 118-123. doi: 10.1111/j.1462-2920.2009.02051.x |
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2009 Journal Article Focus: SynergistetesHugenholtz, P, Hooper, SD and Kyrpides, NC (2009). Focus: Synergistetes. Environmental Microbiology, 11 (6), 1327-1329. doi: 10.1111/j.1462-2920.2009.01949.x |
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2009 Journal Article Genomic analysis of "Elusimicrobium minutum," the first cultivated representative of the phylum "Elusimicrobia" (formerly termite group 1)Herlemann, D. P. R., Geissinger, O., Ikeda-Ohtsubo, W., Kunin, V., Sun, H., Lapidus, A., Hugenholtz, P. and Brune, A. (2009). Genomic analysis of "Elusimicrobium minutum," the first cultivated representative of the phylum "Elusimicrobia" (formerly termite group 1). Applied and Environmental Microbiology, 75 (9), 2841-2849. doi: 10.1128/AEM.02698-08 |
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2009 Journal Article Getting to the core of the gut microbiomeTschop, MH, Hugenholtz, P and Karp, CL (2009). Getting to the core of the gut microbiome. Nature Biotechnology, 27 (4), 344-346. doi: 10.1038/nbt0409-344 |
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2009 Journal Article A changing of the guard: Genomics updateHugenholtz, P and Kyrpides, NC (2009). A changing of the guard: Genomics update. Environmental Microbiology, 11 (3), 551-553. doi: 10.1111/j.1462-2920.2009.01888.x |
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2009 Journal Article Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix oreniiMavromatis, Konstantinos, Ivanova, Natalia, Anderson, Iain, Lykidis, Athanasios, Hooper, Sean D., Sun, Hui, Kunin, Victor, Lapidus, Alla, Hugenholtz, Philip, Patel, Bharat and Kyrpides, Nikos C. (2009). Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii. PLoS One, 4 (1) e4192, e4192.1-e4192.8. doi: 10.1371/journal.pone.0004192 |
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2009 Journal Article Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT)Clum, Alicia, Nolan, Matt, Lang, Elke, Del Rio, Tijana Glavina, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Goeker, Markus, Spring, Stefan, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia C., Chain, Patrick, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip ... Lapidus, Alla (2009). Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT). Standards in Genomic Sciences, 1 (1), 38-45. doi: 10.4056/sigs.1463 |
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2009 Journal Article Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b(T))Ivanova, Natalia, Gronow, Sabine, Lapidus, Alla, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Saunders, Elizabeth, Bruce, David, Goodwin, Lynne, Brettin, Thomas, Detter, John C., Han, Cliff, Pitluck, Sam, Mikhailova, Natalia, Pati, Amrita, Mavrommatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Rohde, Christine, Goeker, Markus ... Klenk, Hans-Peter (2009). Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b(T)). Standards in Genomic Sciences, 1 (2), 126-132. doi: 10.4056/sigs.1854 |
