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2009 Journal Article Getting to the core of the gut microbiomeTschop, MH, Hugenholtz, P and Karp, CL (2009). Getting to the core of the gut microbiome. Nature Biotechnology, 27 (4), 344-346. doi: 10.1038/nbt0409-344 |
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2009 Journal Article A changing of the guard: Genomics updateHugenholtz, P and Kyrpides, NC (2009). A changing of the guard: Genomics update. Environmental Microbiology, 11 (3), 551-553. doi: 10.1111/j.1462-2920.2009.01888.x |
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2009 Journal Article Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix oreniiMavromatis, Konstantinos, Ivanova, Natalia, Anderson, Iain, Lykidis, Athanasios, Hooper, Sean D., Sun, Hui, Kunin, Victor, Lapidus, Alla, Hugenholtz, Philip, Patel, Bharat and Kyrpides, Nikos C. (2009). Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii. PLoS One, 4 (1) e4192, e4192.1-e4192.8. doi: 10.1371/journal.pone.0004192 |
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2009 Journal Article Correlative tem and fish imaging of microbial communitiesKnierim, B., Webb, R., Wilmes, P., Hugenholtz, P., Liphardt, J., McDonald, K., Banfield, J. and Auer, M. (2009). Correlative tem and fish imaging of microbial communities. Microscopy and Microanalysis, 15 (Suppl. 2), 834-835. doi: 10.1017/S1431927609098250 |
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2009 Journal Article Complete genome sequence of Eggerthella lenta type strain (VPI 0255(T))Saunders, Elizabeth, Pukall, Ruediger, Abt, Birte, Lapidus, Alla, Del Rio, Tijana Glavina, Copeland, Alex, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Meincke, Linda, Sims, David, Brettin, Thomas, Detter, John C. ... Han, Cliff (2009). Complete genome sequence of Eggerthella lenta type strain (VPI 0255(T)). Standards in Genomic Sciences, 1 (2), 174-182. doi: 10.4056/sigs.33592 |
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2009 Journal Article Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134(T))Pukall, Ruedieger, Gehrich-Schroeter, Gabriele, Lapidus, Alla, Nolan, Matt, Del Rio, Tijana Glavina, Lucas, Susan, Chen, Feng, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Copeland, Alex, Saunders, Elizabeth, Brettin, Thomas, Detter, John C., Bruce, David, Goodwin, Lynne, Pati, Amrita, Ivanova, Natalia, Mavrommatis, Konstantinos, Ovchinnikova, Galina, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Goeker, Markus, Bristow, Jim ... Han, Cliff (2009). Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134(T)). Standards in Genomic Sciences, 1 (3), 262-269. doi: 10.4056/sigs.41646 |
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2009 Journal Article Complete genome sequence of Pirellula staleyi type strain (ATCC 27377T)Clum, Alicia, Tindall, Brian J., Sikorski, Johannes, Ivanova, Natalia, Mavrommatis, Konstantinos, Lucas, Susan, Del Rio, Tijana Glavina, Nolan, Matt, Chen, Feng, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Chertkov, Olga, Brettin, Thomas, Han, Cliff, Detter, John C., Kuske, Cheryl, Bruce, David, Goodwin, Lynne, Ovchinikova, Galina, Pati, Amrita, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick ... Lapidus, Alla (2009). Complete genome sequence of Pirellula staleyi type strain (ATCC 27377T). Standards in Genomic Sciences, 1 (3), 308-316. doi: 10.4056/sigs.51657 |
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2009 Conference Publication Characterization and development of a systems-level understanding of microbial metabolism in the foregut microbiome of the Tammar wallaby (Macropus eugenii).Pope, P., Denman, S., Tringe, S., Hinds, L., Hugenholtz, P., McSweeney, C. and Morrison, M. (2009). Characterization and development of a systems-level understanding of microbial metabolism in the foregut microbiome of the Tammar wallaby (Macropus eugenii).. 2009 Conference on Gastrointestinal Function, Chicago, USA, 20-22 April, 2009. New York, NY, United States: Springer. doi: 10.1007/s00248-009-9496-x |
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2009 Journal Article Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10(T))Lapidus, Alla, Pukall, Ruediger, LaButtii, Kurt, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Chen, Feng, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Rohde, Manfred, Goeker, Markus, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, D'haeseleer, Patrik, Chain, Patrick, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C. and Klenk, Hans-Peter (2009). Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10(T)). Standards in Genomic Sciences, 1 (1), 3-11. doi: 10.4056/sigs.492 |
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2009 Journal Article Complete genome sequence of Desulfomicrobium baculatum type strain (X-T)Copeland, Alex, Spring, Stefan, Goeker, Markus, Schneider, Susanne, Lapidus, Alla, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia C., Meincke, Linda, Sims, David, Brettin, Thomas, Detter, John C., Han, Cliff ... Lucas, Susan (2009). Complete genome sequence of Desulfomicrobium baculatum type strain (X-T). Standards in Genomic Sciences, 1 (1), 29-37. doi: 10.4056/sigs.13134 |
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2009 Journal Article Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3(T))Han, Cliff, Spring, Stefan, Lapidus, Alla, Del Rio, Tijana Glavina, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia C., Saunders, Elizabeth, Chertkov, Olga, Brettin, Thomas, Goeker, Markus, Rohde, Manfred, Bristow, Jim ... Detter, John C. (2009). Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3(T)). Standards in Genomic Sciences, 1 (1), 54-62. doi: 10.4506/sigs.22138 |
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2009 Journal Article Complete genome sequence of Cryptobacterium curtum type strain (12-3(T))Mavrommatis, Konstantinos, Pukall, Ruediger, Rohde, Christine, Chen, Feng, Sims, David, Brettin, Thomas, Kuske, Cheryl, Detter, John C., Han, Cliff, Lapidus, Alla, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ovchinnikova, Galina, Pati, Amrita, Ivanova, Natalia, Chen, Amy, Palaniappan, Krishna, Chain, Patrick, D'haeseleer, Patrik, Goeker, Markus, Bristow, Jim, Eisen, Jonathan A. ... Kyrpides, Nikos C. (2009). Complete genome sequence of Cryptobacterium curtum type strain (12-3(T)). Standards in Genomic Sciences, 1 (2), 93-100. doi: 10.4056/sigs.12260 |
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2009 Journal Article Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122(T))Land, Miriam, Pukall, Ruediger, Abt, Birte, Goeker, Markus, Rohde, Manfred, Del Rio, Tijana Glavina, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Hauser, Loren, Chang, Yun-Juan, Jefferies, Cynthia C., Saunders, Elizabeth, Brettin, Thomas, Detter, John C., Han, Cliff, Chain, Patrick ... Lapidus, Alla (2009). Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122(T)). Standards in Genomic Sciences, 1 (1), 21-28. doi: 10.4056/sigs.1162 |
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2009 Book Chapter Single cell whole genome amplification of uncultivated organismsPodar, Mircea, Keller, Martin and Hugenholtz, Philip (2009). Single cell whole genome amplification of uncultivated organisms. Uncultivated microorganisms. (pp. 241-256) edited by Slava S. Epstein. Heidelberg, Germany: Springer . doi: 10.1007/978-3-540-85465-4_10 |
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2009 Journal Article Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883(T))Chovatia, Mansi, Sikorski, Johannes, Schroeder, Maren, Lapidus, Alla, Nolan, Matt, Tice, Hope, Del Rio, Tijana Glavina, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Saunders, Elizabeth, Detter, John C., Brettin, Thomas, Rohde, Manfred ... Eisen, Jonathan A. (2009). Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883(T)). Standards in Genomic Sciences, 1 (3), 254-261. doi: 10.4056/sigs.40645 |
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2009 Journal Article Complete genome sequence of Sanguibacter keddieii type strain (ST-74(T))Ivanova, Natalia, Sikorski, Johannes, Sims, David, Brettin, Thomas, Detter, John C., Han, Cliff, Lapidus, Alla, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Chen, Feng, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Pati, Amrita, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, D'haeseleer, Patrik, Chain, Patrick, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Goeker, Markus, Pukall, Ruediger ... Kyrpides, Nikos C. (2009). Complete genome sequence of Sanguibacter keddieii type strain (ST-74(T)). Standards in Genomic Sciences, 1 (2), 110-118. doi: 10.4056/sigs16197 |
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2009 Journal Article Complete genome sequence of Anaerococcus prevotii type strain (PC1(T))LaButti, Kurt, Pukall, Ruediger, Steenblock, Katja, Del Rio, Tijana Glavina, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Saunders, Elizabeth, Brettin, Thomas, Detter, John C., Han, Cliff, Goeker, Markus ... Lapidus, Alla (2009). Complete genome sequence of Anaerococcus prevotii type strain (PC1(T)). Standards in Genomic Sciences, 1 (2), 159-165. doi: 10.4056/sigs.2494 |
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2009 Journal Article Complete genome sequence of Dyadobacter fermentans type strain (NS114(T))Lang, Elke, Lapidus, Alla, Chertkov, Olga, Brettin, Thomas, Detter, John C., Han, Cliff, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Chen, Feng, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Kopitz, Marcus, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ovchinnikova, Galina, Pati, Amrita, Ivanova, Natalia, Mavrommatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Bristow, Jim ... Klenk, Hans-Peter (2009). Complete genome sequence of Dyadobacter fermentans type strain (NS114(T)). Standards in Genomic Sciences, 1 (2), 133-140. doi: 10.4056/sigs.19262 |
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2009 Journal Article Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575(T))Spring, Stefan, Lapidus, Alla, Schroeder, Maren, Gleim, Dorothea, Sims, David, Meincke, Linda, Del Rio, Tijana Glavina, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Saunders, Elizabeth, Brettin, Thomas ... Han, Cliff (2009). Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575(T)). Standards in Genomic Sciences, 1 (3), 242-252. doi: 10.4056/sigs.39508 |
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2009 Journal Article Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21(T))Munk, Chris, Lapidus, Alla, Copeland, Alex, Jando, Marlen, Mayilraj, Shanmugam, Del Rio, Tijana Glavina, Nolan, Matt, Chen, Feng, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Detter, John C., Bruce, David, Goodwin, Lynne, Chain, Patrick, Pitluck, Sam, Goeker, Markus, Ovchinikova, Galina, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Bristow, Jim ... Klenk, Hans-Peter (2009). Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21(T)). Standards in Genomic Sciences, 1 (3), 292-299. doi: 10.4056/sigs.47643 |
