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2010 Journal Article Complete genome sequence of Meiothermus ruber type strain (21(T))Tindall, Brian J., Sikorski, Johannes, Lucas, Susan, Goltsman, Eugene, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Faehnrich, Regine, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Goeker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A. ... Lapidus, Alla (2010). Complete genome sequence of Meiothermus ruber type strain (21(T)). Standards in Genomic Sciences, 3 (1), 26-36. doi: 10.4056/sigs.1032748 |
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2010 Journal Article Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T))Djao, Olivier Duplex Ngatchou, Zhang, Xiaojing, Lucas, Susan, Lapidus, Alla, Del Rio, Tijana Glavina, Nolan, Matt, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Ovchinnikova, Galina, Pati, Amrita, Brambilla, Evelyne, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Sikorski, Johannes, Spring, Stefan, Goeker, Markus ... Klenk, Hans-Peter (2010). Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T)). Standards in Genomic Sciences, 3 (3), 267-275. doi: 10.4056/sigs.1233249 |
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2010 Journal Article Complete genome sequence of Gordonia bronchialis type strain (3410(T))Ivanova, Natalia, Sikorski, Johannes, Jando, Marlen, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Chen, Feng, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Saunders, Elizabeth, Han, Cliff, Detter, John C., Brettin, Thomas, Rohde, Manfred ... Kyrpides, Nikos C. (2010). Complete genome sequence of Gordonia bronchialis type strain (3410(T)). Standards in Genomic Sciences, 2 (1), 19-28. doi: 10.4056/sigs.611106 |
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2010 Conference Publication ShotgunFunctionalizeR - an R-package for functional comparison of metagenomesKristiansson, E., Hugenholtz, P. and Dalevi, D. (2010). ShotgunFunctionalizeR - an R-package for functional comparison of metagenomes. 35th Congress of the Federation-of-European-Biochemical-Societies, Gothenburg Sweden, Jun 26-Jul 01, 2010. MALDEN: WILEY-BLACKWELL PUBLISHING, INC. |
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2010 Journal Article Complete genome sequence of Atopobium parvulum type strain (IPP 1246(T)) (vol 1, pg 166, 2009)Copeland, Alex, Sikorski, Johannes, Lapidus, Alla, Nolan, Matt, Del Rio, Tijana Glavina, Lucas, Susan, Chen, Feng, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Pukall, Ruediger, Chertkov, Olga, Brettin, Thomas, Han, Cliff, Kuske, Cheryl, Bruce, David, Goodwin, Lynne, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Rohde, Manfred, Goeker, Markus, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip ... Detter, John C. (2010). Complete genome sequence of Atopobium parvulum type strain (IPP 1246(T)) (vol 1, pg 166, 2009). Standards in Genomic Sciences, 2 (3), 361-362. doi: 10.4056/sigs.992408 |
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2010 Journal Article Complete genome sequence of Conexibacter woesei type strain (ID131577(T))Pukall, Ruediger, Lapidus, Alla, Del Rio, Tijana Glavina, Copeland, Alex, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Mavromatis, Konstantinos, Ivanova, Natalia, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Meincke, Linda, Sims, David, Brettin, Thomas, Detter, John C., Rohde, Manfred, Goeker, Markus ... Hugenholtz, Philip (2010). Complete genome sequence of Conexibacter woesei type strain (ID131577(T)). Standards in Genomic Sciences, 2 (2), 212-219. doi: 10.4056/sigs.751339 |
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2010 Journal Article Complete genome sequence of Kribbella flavida type strain (IFO 14399(T))Pukall, Ruediger, Lapidus, Alla, Del Rio, Tijana Glavina, Copeland, Alex, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, LaButti, Kurt, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pitluck, Sam, Bruce, David, Goodwin, Lynne, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Rohde, Manfred, Goeker, Markus, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor ... Brettin, Thomas (2010). Complete genome sequence of Kribbella flavida type strain (IFO 14399(T)). Standards in Genomic Sciences, 2 (2), 186-193. doi: 10.4056/sigs.731321 |
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2010 Journal Article Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022(T))Pati, Amrita, LaButti, Kurt, Pukall, Ruediger, Nolan, Matt, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Copeland, Alex, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pitluck, Sam, Bruce, David, Goodwin, Lynne, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Brettin, Thomas, Sikorski, Johannes, Rohde, Manfred, Goeker, Markus, Bristow, Jim, Eisen, Jonathan A. ... Lapidus, Alla (2010). Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022(T)). Standards in Genomic Sciences, 2 (1), 49-56. doi: 10.4056/sigs.601105 |
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2010 Journal Article Complete genome sequence of Sulfurospirillum deleyianum type strain (5175(T))Sikorski, Johannes, Lapidus, Alla, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Saunders, Elizabeth, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ovchinnikova, Galina, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Detter, John C., Han, Cliff, Rohde, Manfred, Lang, Elke ... Klenk, Hans-Peter (2010). Complete genome sequence of Sulfurospirillum deleyianum type strain (5175(T)). Standards in Genomic Sciences, 2 (2), 149-157. doi: 10.4056/sigs.671209 |
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2010 Journal Article Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1(T))Kiss, Hajnalka, Cleland, David, Lapidus, Alla, Lucas, Susan, Del Rio, Tijana Glavina, Nolan, Matt, Tice, Hope, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Lu, Megan, Brettin, Thomas, Detter, John C., Goeker, Markus, Tindall, Brian J., Beck, Brian, McDermott, Timothy R., Woyke, Tanja ... Cheng, Jan-Fang (2010). Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1(T)). Standards in Genomic Sciences, 3 (2), 153-162. doi: 10.4056/sigs.1153107 |
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2009 Journal Article A phylogeny-driven genomic encyclopaedia of Bacteria and ArchaeaWu, Dongying, Hugenholtz, Philip, Mavromatis, Konstantinos, Pukall, Ru¨diger, Dalin, Eileen, Ivanova, Natalia N., Kunin, Victor, Goodwin, Lynne, Wu, Martin, Tindall, Brian J., Hooper, Sean D., Pati, Amrita, Lykidis, Athanasios, Spring, Stefan, Anderson, Iain J., D'haeseleer, Patrik, Zemla, Adam, Singer, Mitchell, Lapidus, Alla, Nolan, Matt, Copeland, Alex, Han, Cliff, Chen, Feng, Cheng, Jan-Fang, Lucas, Susan, Kerfeld, Cheryl, Lang, Elke, Gronow, Sabine, Chain, Patrick ... Elsen, Jonathan A. (2009). A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature, 462 (7276), 1056-1060. doi: 10.1038/nature08656 |
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2009 Journal Article Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3 T)Han, Cliff, Spring, Stefan, Lapidus, Alla, del Rio, Tijana Glavina, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia C., Saunders, Elizabeth, Chertkov, Olga, Brettin, Thomas, Göker, Markus, Rohde, Manfred, Bristow, Jim ... Detter, John C. (2009). Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3 T). Standards in Genomic Sciences, 1 (1), 54-62. doi: 10.4056/sigs.22138 |
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2009 Journal Article Complete genome sequence of Rhodothermus marinus type strain (R-10 T)Nolan, Matt, Tindall, Brian J., Pomrenke, Helga, Lapidus, Alla, Copeland, Alex, del Rio, Tijana Glavina, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Saunders, Elizabeth, Han, Cliff, Bruce, David, Goodwin, Lynne, Chain, Patrick, Pitluck, Sam, Ovchinikova, Galina, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Göker, Markus, Bristow, James ... Detter, John C. (2009). Complete genome sequence of Rhodothermus marinus type strain (R-10 T). Standards in Genomic Sciences, 1 (3), 283-291. doi: 10.4056/sigs.46736 |
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2009 Journal Article Complete genome sequence of Atopobium parvulum type strain (IPP 1246 T)Copeland, Alex, Sikorski, Johannes, Lapidus, Alla, Nolan, Matt, Del Rio, Tijana Glavina, Lucas, Susan, Chen, Feng, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Pukall, Rüdiger, Chertkov, Olga, Brettin, Thomas, Han, Cliff, Kuske, Cheryl, Bruce, David, Goodwin, Lynne, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Rohde, Manfred, Göker, Markus, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip ... Detter, John C. (2009). Complete genome sequence of Atopobium parvulum type strain (IPP 1246 T). Standards in Genomic Sciences, 1 (2), 166-173. doi: 10.4056/sigs.29547 |
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2009 Journal Article Complete genome sequence of anaerococcus prevotii type strain (PC1 T)Labutti, Kurt, Pukall, Rüdiger, Steenblock, Katja, Del Rio, Tijana Glavina, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Saunders, Elizabeth, Brettin, Thomas, Detter, John C., Han, Cliff, Göker, Markus ... Lapidus, Alla (2009). Complete genome sequence of anaerococcus prevotii type strain (PC1 T). Standards in Genomic Sciences, 1 (2), 159-165. doi: 10.4056/sigs.24194 |
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2009 Journal Article The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadataLiolios, Konstantinos, Chen, I-Min A., Mavromatis, Konstantinos, Tavernarakis, Nektarios, Hugenholtz, Philip, Markowitz, Victor M. and Kyrpides, Nikos C. (2009). The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Research, 38 (Supp. 1) gkp848, D346-D354. doi: 10.1093/nar/gkp848 |
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2009 Journal Article ShotgunFunctionalizeR: An R-package for functional comparison of metagenomesKristiansson, Erik, Hugenholtz, Philip and Dalevi, Daniel (2009). ShotgunFunctionalizeR: An R-package for functional comparison of metagenomes. Bioinformatics, 25 (20), 2737-2738. doi: 10.1093/bioinformatics/btp508 |
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2009 Journal Article Genome project standards in a new era of sequencingChain, P. S. G., Grafham, D. V., Fulton, R. S., FitzGerald, M. G., Hostetler, J., Muzny, D., Ali, J., Birren, B., Bruce, D. C., Buhay, C., Cole, J. R., Ding, Y., Dugan, S., Field, D., Garrity, G. M., Gibbs, R., Graves, T., Han, C. S., Harrison, S. H., Highlander, S., Hugenholtz, P., Khouri, H. M., Kodira, C. D., Kolker, E., Kyrpides, N. C., Lang, D., Lapidus, A., Malfatti, S. A., Markowitz, V. ... Detter, J. C. (2009). Genome project standards in a new era of sequencing. Science, 326 (5950), 236-237. doi: 10.1126/science.1180614 |
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2009 Journal Article Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimatesKunin, Victor, Engelbrekston, Anna, Ochman, Howard and Hugenholtz, Philip (2009). Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environmental Microbiology, 12 (1), 118-123. doi: 10.1111/j.1462-2920.2009.02051.x |
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2009 Journal Article Focus: SynergistetesHugenholtz, P, Hooper, SD and Kyrpides, NC (2009). Focus: Synergistetes. Environmental Microbiology, 11 (6), 1327-1329. doi: 10.1111/j.1462-2920.2009.01949.x |
