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2011 Journal Article Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal ventGoker, Markus, Daligault, Hajnalka, Mwirichia, Romano, Lapidus, Alla, Lucas, Susan, Deshpande, Shweta, Pagani, Ioanna, Tapia, Roxanne, Cheng, Jan-Fang, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Han, Cliff, Land, Miriam, Hauser, Loren, Pan, Chongle, Brambilla, Evelyne, Rohde, Manfred, Spring, Stefan, Sikorski, Johannes, Wirth, Reinhard, Detter, John C., Woyke, Tanja ... Klenk, Hans-Peter (2011). Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent. Standards in Genomic Sciences, 5 (3), 407-415. doi: 10.4056/sigs.2465574 |
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2011 Journal Article Complete genome sequence of Haliscomenobacter hydrossis type strain (O-T)Daligault, Hajnalka, Lapidus, Alla, Zeytun, Ahmet, Nolan, Matt, Lucas, Susan, Del Rio, Tijana Galvina, Tice, Hope, Cheng, Jan-Feng, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Huntemann, Marcel, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne-Marie, Rohde, Manfred, Verbarg, Susanne, Goker, Markus, Bristow, James, Eisen, JA ... Woyke, Tanja (2011). Complete genome sequence of Haliscomenobacter hydrossis type strain (O-T). Standards in Genomic Sciences, 4 (3), 352-360. doi: 10.4056/sigs.1964579 |
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2011 Journal Article Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10(T))Lapidus, Alla, Chertkov, Olga, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Huntemann, Marcel, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne, Rohde, Manfred, Abt, Birte, Spring, Stefan, Goker, Markus, Bristow, James, Eisen, Jonathan A. ... Woyke, Tanja (2011). Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10(T)). Standards in Genomic Sciences, 5 (1), 86-96. doi: 10.4056/sigs.2235024 |
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2011 Journal Article Complete genome sequence of Paludibacter propionicigenes type strain (WB4 T)Gronow, Sabine, Munk, Christine, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxane, Han, Cliff, Goodwin, Lynn, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brambilla, Evelyne, Rohde, Manfred, Goker, Markus, Detter, John C., Woyke, Tanja, Bristow, James ... Klenk, Hans-Peter (2011). Complete genome sequence of Paludibacter propionicigenes type strain (WB4 T). Standards in Genomic Sciences, 4 (1), 36-44. doi: 10.4056/sigs.1503846 |
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2011 Journal Article Complete genome sequence of leadbetterella byssophila type strain (4M15 T)Abt, Birte, Teshima, Hazuki, Lucas, Susan, Lapidus, Alla, del Rio, Tijana Glavina, Nolan, Matt, Tice, Hope, Cheng, Jan-Fang, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Goker, Markus, Tindall, Brian J., Detter, John C., Woyke, Tanja, Bristow, James ... Kyrpides, Nikos C. (2011). Complete genome sequence of leadbetterella byssophila type strain (4M15 T). Standards in Genomic Sciences, 4 (1), 2-12. doi: 10.4056/sigs.1413518 |
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2011 Journal Article Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2(T)) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and RaKlenk, Hans-Peter, Lapidus, Alla, Chertkov, Olga, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Daum, Chris, Chen, Amy, Palaniappan, Krishna, Chang, Yun-juan, Land, Miriam, Hauser, Loren, Jeffries, Cynthia D., Detter, John C., Rohde, Manfred, Abt, Birte, Pukall, Rüdiger, Göker, Markus ... Eisen, Jonathan A. (2011). Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2(T)) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Ra. Standards in Genomic Sciences, 5 (1), 121-134. doi: 10.4056/sigs.2144922 |
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2011 Journal Article Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH2T)Huntemann, Marcel, Lu, Megan, Nolan, Matt, Lapidus, Alla, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Feng, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Jeffries, Cynthia D., Detter, John C., Brambilla, Evelynne-Marie, Rohde, Manfred, Spring, Stefan, Goker, Markus, Woyke, Tanja, Bristow, James ... Mavromatis, Konstantinos (2011). Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH2T). Standards in Genomic Sciences, 4 (3), 303-311. doi: 10.4056/sigs.1814460 |
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2011 Journal Article Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A(T))Anderson, Iain, Goker, Markus, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Huntemann, Marcel, Liolios, Konstantinos, Ivanova, Natalia, Pagani, Ioanna, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne-Marie, Huber, Harald, Yasawong, Montri, Rohde, Manfred, Spring, Stefan, Abt, Birte, Sikorski, Johannes ... Lapidus, Alla (2011). Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A(T)). Standards in Genomic Sciences, 4 (3), 381-392. doi: 10.4056/sigs.2014648 |
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2011 Journal Article Complete genome sequence of Isosphaera pallida type strain (IS1BT)Goker, Markus, Cleland, David, Saunders, Elizabeth, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Beck, Brian, Woyke, Tanja, Bristow, James, Eisen, Jonathan A. ... Klenk, Hans-Peter (2011). Complete genome sequence of Isosphaera pallida type strain (IS1BT). Standards in Genomic Sciences, 4 (1), 63-71. doi: 10.4056/sigs.1533840 |
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2010 Journal Article Complete genome sequence of Desulfarculus baarsii type strain (2st14(T))Sun, Hui, Spring, Stefan, Lapidus, Alla, Davenport, Karen, Del Rio, Tijana Glavina, Tice, Hope, Nolan, Matt, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Pagani, Ionna, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Han, Cliff, Rohde, Manfred, Brambilla, Evelyne, Goeker, Markus, Woyke, Tanja ... Land, Miriam (2010). Complete genome sequence of Desulfarculus baarsii type strain (2st14(T)). Standards in Genomic Sciences, 3 (3), 276-284. doi: 10.4056/sigs.1243258 |
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2010 Journal Article Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1(T))Sikorski, Johannes, Chertkov, Olga, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brambilla, Evelyne, Yasawong, Montri, Rohde, Manfred, Pukall, Ruediger, Spring, Stefan, Goeker, Markus ... Klenk, Hans-Peter (2010). Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1(T)). Standards in Genomic Sciences, 3 (3), 304-314. doi: 10.4056/sigs.1273360 |
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2010 Journal Article Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3(T))Pitluck, Sam, Yasawong, Montri, Held, Brittany, Lapidus, Alla, Nolan, Matt, Copeland, Alex, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Chertkov, Olga, Goodwin, Lynne, Tapia, Roxane, Han, Cliff, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Pukall, Ruediger, Spring, Stefan, Rohde, Manfred, Sikorski, Johannes ... Klenk, Hans-Peter (2010). Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3(T)). Standards in Genomic Sciences, 3 (3), 285-293. doi: 10.4056/sigs.1253298 |
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2010 Journal Article Complete genome sequence of Haloterrigena turkmenica type strain (4k T)Saunders, Elisabeth, Tindall, Brian J., Fähnrich, Regine, Lapidus, Alla, Copeland, Alex, del Rio, Tijana Glavina, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Detter, John C., Bruce, David, Goodwin, Lynne, Chain, Patrick, Pitluck, Sam, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Rohde, Manfred, Göker, Markus, Bristow, James ... Kyrpides, Nikos C. (2010). Complete genome sequence of Haloterrigena turkmenica type strain (4k T). Standards in Genomic Sciences, 2 (1), 107-116. doi: 10.4056/sigs.681272 |
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2010 Journal Article Multiple displacement amplification compromises quantitative analysis of metagenomesYilmaz, S, Allgaier, M and Hugenholtz, P (2010). Multiple displacement amplification compromises quantitative analysis of metagenomes. Nature Methods, 7 (12), 943-944. doi: 10.1038/nmeth1210-943 |
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2010 Journal Article Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377 T)Clum, Alicia, Tindall, Brian J., Sikorski, Johannes, Ivanova, Natalia, Mavromatis, Konstantinos, Lucas, Susan, Glavina Del Rio, Tijana, Nolan, Matt, Chen, Feng, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Chertkov, Olga, Thomas, Brettin, Han, Cliff, Detter, John C., Kuske, Cheryl, Bruce, David, Goodwin, Lynne, Ovchinikova, Galina, Pati, Amrita, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Land, Miram, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick ... Lapidus, Alla (2010). Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377 T). Standards in Genomic Sciences, 2 (2), 228-228. doi: 10.4056/sigs.88.1234 |
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2010 Journal Article Complete genome sequence of Methanothermus fervidus type strain (V24S)Anderson, Iain, Djao, Olivier Duplex, Misra, Monica, Chertkov, Olga, Nolan, Matt, Lucas, Susan, Lapidus, Alla, Giavina Del Rio, Tijana, Tice, Hope, Cheng, Jan-Fang, Tapia, Roxanne, Han. Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Brambilla, Evelyne, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Sikorski, Johannes, Spring, Stefan, Rohde, Manfred ... Kyrpides, Nikos C. (2010). Complete genome sequence of Methanothermus fervidus type strain (V24S). Standards in Genomic Sciences, 3 (3), 315-324. doi: 10.4056/sigs.1283367 |
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2010 Journal Article Evolutionary relationships of wild hominids recapitulated by gut microbial communitiesOchman, Howard, Worobey, Michael, Kuo, Chih-Horng, Ndjango, Jean-Bosco N., Peeters, Jean-Bosco N., Hahn, Beatrice H. and Hugenholtz, Philip (2010). Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biology, 8 (11 Article number e1000546) e1000546, e1000546. doi: 10.1371/journal.pbio.1000546 |
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2010 Journal Article Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847)Brambilla, Evelyne, Djao, Olivier Duplex, Daligault, Hajnalka, Lapidus, Alla, Lucas, Susan, Hammon, Nancy, Nolan , Matt, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Spring, Stefan, Sikorski, Johannes, Goker, Markus, Woyke, Tanja ... Klenk, Hans-Peter (2010). Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847). Standards in Genomic Sciences, 3 (2), 203-211. doi: 10.4056/sigs.1183143 |
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2010 Journal Article Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P(T))Pitluck, Sam, Yasawong, Montri, Munk, Christine, Nolan, Matt, Lapidus, Alla, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Spring, Stefan, Sikorski, Johannes, Goeker, Markus ... Klenk, Hans-Peter (2010). Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P(T)). Standards in Genomic Sciences, 3 (2), 108-116. doi: 10.4056/sigs.1133078 |
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2010 Journal Article Fixation-free fluorescence in situ hybridization for targeted enrichment of microbial populationsYilmaz, S, Haroon, MF, Rabkin, BA, Tyson, GW and Hugenholtz, P (2010). Fixation-free fluorescence in situ hybridization for targeted enrichment of microbial populations. The ISME Journal, 4 (10), 1352-1356. doi: 10.1038/ismej.2010.73 |
