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2011 Journal Article Complete genome sequence of Desulfobulbus propionicus type strain (1pr3 T)Pagani, Ioanna, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Desh-Pande, Shweta, Cheng, Jan-Fang, Chertkov, Olga, Davenport, Karen, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Mavromatis, Konstantinos, Ivanova, Natalia, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Brambilla, Evelyne, Kannan, K. Palani, Djao, Olivier D. Ngatchou, Rohde, Manfred ... Klenk, Hans-Peter (2011). Complete genome sequence of Desulfobulbus propionicus type strain (1pr3 T). Standards in Genomic Sciences, 4 (1), 100-110. doi: 10.4056/sigs.1613929 |
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2011 Book Chapter The enduring legacy of small subunit rRNA in microbiologyTringe, Susannah G. and Hugenholtz, Philip (2011). The enduring legacy of small subunit rRNA in microbiology. Handbook of molecular microbial ecology I: metagenomics and complementary approaches. (pp. 123-128) Hoboken, New Jersey, USA: John Wiley & Sons. doi: 10.1002/9781118010518.ch15 |
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2011 Journal Article Complete genome sequence of Tsukamurella paurometabola type strain (no. 33(T))Munk, A. Christine, Lapidus, Alla, Lucas, Susan, Nolan, Matt, Tice, Hope, Cheng, Jan-Fang, Del Rio, Tijana Glavina, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Huntemann, Marcel, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Tapia, Roxanne, Han, Cliff, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Yasawong, Montri, Brambilla, Evelyne-Marie, Rohde, Manfred, Sikorski, Johannes, Goker, Markus ... Klenk, Hans-Peter (2011). Complete genome sequence of Tsukamurella paurometabola type strain (no. 33(T)). Standards in Genomic Sciences, 4 (3), 342-351. doi: 10.4056/sigs.1894556 |
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2011 Journal Article Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20(T))Pati, Amrita, Gronow, Sabine, Lu, Megan, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Feng, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Mavromatis, Konstantinos, Mikhailova, N, Huntemann, Marcel, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Detter, John C., Brambilla, Evelyne-Marie, Rohde, Manfred, Goker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A. ... Ivanova, Natalia (2011). Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20(T)). Standards in Genomic Sciences, 5 (1), 41-49. doi: 10.4056/sigs.2164949 |
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2011 Journal Article Complete genome sequence of Thermomonospora curvata type strain (B9 T)Chertkov, Olga, Sikorski, Johannes, Nolan, Matt, Lapidus, Alla, Lucas, Susan, del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Djao, Oliver D. N., Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Han, Cliff, Detter, John C., Rohde, Manfred, Goker, Markus, Woyke, Tanja ... Kyrpides, Nikos C. (2011). Complete genome sequence of Thermomonospora curvata type strain (B9 T). Standards in Genomic Sciences, 4 (1), 13-22. doi: 10.4056/sigs.1453580 |
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2011 Journal Article Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR(T))Han, Cliffe, Mwirichia, Romano, Chertkov, Olga, Held, Brittany, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Huntemann, Marcel, Liolios, Konstantinos, Ivanova, Natalia, Pagani, Ioanna, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne, Rohde, Manfred, Spring, Stefan, Sikorski, Johannes, Goker, Markus ... Detter, John C. (2011). Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR(T)). Standards in Genomic Sciences, 4 (3), 371-380. doi: 10.4056/sigs.2004684 |
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2011 Journal Article Complete genome sequence of Weeksella virosa type strain (9751 T)Lang, Elke, Teshima, Hazuki, Lucas, Susan, Lapidus, Alla, Hammon, Nancy, Deshpande, Shweta, Nolan, Matt, Cheng, Jan-Fang, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Mikhailova, Natalia, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brambilla, Evelyne-Marie, Kopitz, Markus, Rohde, Manfred, Goker, Markus, Tindall, Brian J. ... Kyrpides, Nikos C. (2011). Complete genome sequence of Weeksella virosa type strain (9751 T). Standards in Genomic Sciences, 4 (1), 81-90. doi: 10.4056/sigs.1603927 |
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2011 Journal Article Complete genome sequence of Cellulophaga algicola type strain (IC166(T))Abt, Birte, Lu, Megan, Misra, Monica, Han, Cliff, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxane, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Brambilla, Evelyne, Rohde, Manfred, Tindall, Brian J., Goeker, Markus ... Lapidus, Alla (2011). Complete genome sequence of Cellulophaga algicola type strain (IC166(T)). Standards in Genomic Sciences, 4 (1), 72-80. doi: 10.4056/sigs.1543845 |
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2011 Journal Article Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1(T))Anderson, Iain, Sikorski, Johannes, Zeytun, Ahmet, Nolan, Matt, Lapidus, Alla, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Feng, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Huntemann, Marcel, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne-Marie, Ngatchou-Djao, Oliver D., Rohde, Manfred, Tindall, Brian J., Goker, Markus ... Kyrpides, Nikos C. (2011). Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1(T)). Standards in Genomic Sciences, 4 (3), 322-330. doi: 10.4056/sigs.1844518 |
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2011 Journal Article Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262(T))Woyke, Tanja, Chertkov, Olga, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Feng, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Huntemann, Marcel, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne-Marie, Rohde, Manfred, Mwirichia, Romano, Sikorski, Johannes, Tindall, Brian J., Goker, Markus ... Kyrpides, Nikos C. (2011). Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262(T)). Standards in Genomic Sciences, 5 (1), 21-29. doi: 10.4056/sigs.2124912 |
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2011 Journal Article Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1 T)Pitluck, Sam, Sikorski, Johannes, Zeytun, Ahmet, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Brambilla, Evelyne, Djao, Oliver D. Ngatchou, Rohde, Manfred, Spring, Stefan, Goker, Markus, Woyke, Tanja ... Land, Miriam (2011). Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1 T). Standards in Genomic Sciences, 4 (1), 54-62. doi: 10.4056/sigs.1523807 |
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2010 Journal Article Complete genome sequence of Desulfarculus baarsii type strain (2st14(T))Sun, Hui, Spring, Stefan, Lapidus, Alla, Davenport, Karen, Del Rio, Tijana Glavina, Tice, Hope, Nolan, Matt, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Pagani, Ionna, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Han, Cliff, Rohde, Manfred, Brambilla, Evelyne, Goeker, Markus, Woyke, Tanja ... Land, Miriam (2010). Complete genome sequence of Desulfarculus baarsii type strain (2st14(T)). Standards in Genomic Sciences, 3 (3), 276-284. doi: 10.4056/sigs.1243258 |
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2010 Journal Article Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1(T))Sikorski, Johannes, Chertkov, Olga, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brambilla, Evelyne, Yasawong, Montri, Rohde, Manfred, Pukall, Ruediger, Spring, Stefan, Goeker, Markus ... Klenk, Hans-Peter (2010). Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1(T)). Standards in Genomic Sciences, 3 (3), 304-314. doi: 10.4056/sigs.1273360 |
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2010 Journal Article Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3(T))Pitluck, Sam, Yasawong, Montri, Held, Brittany, Lapidus, Alla, Nolan, Matt, Copeland, Alex, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Chertkov, Olga, Goodwin, Lynne, Tapia, Roxane, Han, Cliff, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Pukall, Ruediger, Spring, Stefan, Rohde, Manfred, Sikorski, Johannes ... Klenk, Hans-Peter (2010). Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3(T)). Standards in Genomic Sciences, 3 (3), 285-293. doi: 10.4056/sigs.1253298 |
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2010 Journal Article Complete genome sequence of Haloterrigena turkmenica type strain (4k T)Saunders, Elisabeth, Tindall, Brian J., Fähnrich, Regine, Lapidus, Alla, Copeland, Alex, del Rio, Tijana Glavina, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Detter, John C., Bruce, David, Goodwin, Lynne, Chain, Patrick, Pitluck, Sam, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Rohde, Manfred, Göker, Markus, Bristow, James ... Kyrpides, Nikos C. (2010). Complete genome sequence of Haloterrigena turkmenica type strain (4k T). Standards in Genomic Sciences, 2 (1), 107-116. doi: 10.4056/sigs.681272 |
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2010 Journal Article Multiple displacement amplification compromises quantitative analysis of metagenomesYilmaz, S, Allgaier, M and Hugenholtz, P (2010). Multiple displacement amplification compromises quantitative analysis of metagenomes. Nature Methods, 7 (12), 943-944. doi: 10.1038/nmeth1210-943 |
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2010 Journal Article Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377 T)Clum, Alicia, Tindall, Brian J., Sikorski, Johannes, Ivanova, Natalia, Mavromatis, Konstantinos, Lucas, Susan, Glavina Del Rio, Tijana, Nolan, Matt, Chen, Feng, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Chertkov, Olga, Thomas, Brettin, Han, Cliff, Detter, John C., Kuske, Cheryl, Bruce, David, Goodwin, Lynne, Ovchinikova, Galina, Pati, Amrita, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Land, Miram, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick ... Lapidus, Alla (2010). Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377 T). Standards in Genomic Sciences, 2 (2), 228-228. doi: 10.4056/sigs.88.1234 |
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2010 Journal Article Complete genome sequence of Methanothermus fervidus type strain (V24S)Anderson, Iain, Djao, Olivier Duplex, Misra, Monica, Chertkov, Olga, Nolan, Matt, Lucas, Susan, Lapidus, Alla, Giavina Del Rio, Tijana, Tice, Hope, Cheng, Jan-Fang, Tapia, Roxanne, Han. Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Brambilla, Evelyne, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Sikorski, Johannes, Spring, Stefan, Rohde, Manfred ... Kyrpides, Nikos C. (2010). Complete genome sequence of Methanothermus fervidus type strain (V24S). Standards in Genomic Sciences, 3 (3), 315-324. doi: 10.4056/sigs.1283367 |
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2010 Journal Article Evolutionary relationships of wild hominids recapitulated by gut microbial communitiesOchman, Howard, Worobey, Michael, Kuo, Chih-Horng, Ndjango, Jean-Bosco N., Peeters, Jean-Bosco N., Hahn, Beatrice H. and Hugenholtz, Philip (2010). Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biology, 8 (11 Article number e1000546) e1000546, e1000546. doi: 10.1371/journal.pbio.1000546 |
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2010 Journal Article Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P(T))Pitluck, Sam, Yasawong, Montri, Munk, Christine, Nolan, Matt, Lapidus, Alla, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Spring, Stefan, Sikorski, Johannes, Goeker, Markus ... Klenk, Hans-Peter (2010). Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P(T)). Standards in Genomic Sciences, 3 (2), 108-116. doi: 10.4056/sigs.1133078 |
