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2011 Journal Article Complete genome sequence of Marivirga tractuosa type strain (H-43(T))Pagani, Ioanna, Chertkov, Olga, Lapidus, Alla, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Nolan, Matt, Saunders, Elizabeth, Pitluck, Sam, Held, Brittany, Goodwin, Lynne, Liolios, Konstantinos, Ovchinikova, Galina, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Jeffries, Cynthia D., Detter, John C., Han, Cliff, Tapia, Roxanne, Ngatchou-Djao, Olivier D., Rohde, Manfred, Göker, Markus ... Kyrpides, Nikos C. (2011). Complete genome sequence of Marivirga tractuosa type strain (H-43(T)). Standards in Genomic Sciences, 4 (2), 154-162. doi: 10.4056/sigs.1623941 |
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2011 Journal Article Complete genome sequence of Bacteroides salanitronis type strain (BL78(T))Gronow, Sabine, Held, Brittany, Lucas, Susan, Lapidus, Alla, Del Rio, Tijana Glavina, Nolan, Matt, Tice, Hope, Deshpande, Shweta, Cheng, Jan-Fang, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brambilla, Evelyne-Marie, Rohde, Manfred, Göker, Markus, Detter, John C., Woyke, Tanja ... Eisen, Jonathan A. (2011). Complete genome sequence of Bacteroides salanitronis type strain (BL78(T)). Standards in Genomic Sciences, 4 (2), 191-199. doi: 10.4056/sigs.1704212 |
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2011 Journal Article Characterization of trapped lignin-degrading microbes in tropical forest soilDeangelis, Kristen M., Allgaier, Martin, Chavarria, Yaucin, Fortney, Julian L., Hugenholtz, Philip, Simmons, Blake, Sublette, Kerry, Silver, Whendee L. and Hazen, Terry C. (2011). Characterization of trapped lignin-degrading microbes in tropical forest soil. Plos One, 6 (4) e19306, e19306.1-e19306.9. doi: 10.1371/journal.pone.0019306 |
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2011 Journal Article Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiomeBurnum, Kristin E., Callister, Stephen J., Nicora, Carrie D., Purvine, Samuel O., Hugenholtz, Philip, Warnecke, Falk, Scheffrahn. Rudolf H., Smith, Richard D. and Lipton, Mary S. (2011). Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome. ISME Journal, 5 (1), 161-164. doi: 10.1038/ismej.2010.97 |
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2011 Journal Article Identification of a haloalkaliphilic and thermostable cellulase with improved ionic liquid toleranceZhang, Tao, Datta, Supratim, Eichler, Jerry, Ivanova, Natalia, Axen, Seth D., Kerfeld, Cheryl A., Chen, Feng, Kyrpides, Nikos, Hugenholtz, Philip, Cheng, Jan-Fang, Sale, Kenneth L., Simmons, Blake and Rubin, Eddy (2011). Identification of a haloalkaliphilic and thermostable cellulase with improved ionic liquid tolerance. Green Chemistry, 13 (8), 2083-2090. doi: 10.1039/c1gc15193b |
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2011 Journal Article Complete genome sequence of mahella australiensis type strain (50-1 BONT)Sikorski, Johannes, Teshima, Hazuki, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Huntemann, Marcel, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Ngatchou-Djao, Oliver Duplex, Rohde, Manfred, Pukall, Rudiger, Spring, Stefan, Abt, Birte, Goker, Markus, Detter, John C. ... Lapidus, Alla (2011). Complete genome sequence of mahella australiensis type strain (50-1 BONT). Standards in Genomic Sciences, 4 (3), 331-341. doi: 10.4056/sigs.1864526 |
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2011 Journal Article Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113(T))Liolios, Konstantinos, Sikorski, Johannes, Lu, Meagan, Nolan, Matt, Lapidus, Alla, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Feng, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Huntemann, Marcel, Ivanova, Natalia, Pagani, Ioanna, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne-Marie, Kotsyurbenko, Oleg, Rohde, Manfred, Tindall, Brian J., Abt, Birte, Goker, Markus ... Kyrpides, Nikos C. (2011). Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113(T)). Standards in Genomic Sciences, 5 (1), 30-40. doi: 10.4056/sigs.2154937 |
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2011 Journal Article Complete genome sequence of Truepera radiovictrix type strain (RQ-24 T)Ivanova, Natalia, Rohde, Christine, Munk, Christine, Nolan, Matt, Lucas, Susan, del Rio,Tijana Glavina, Tice, Hope, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Pitluck. Sam, Liolios, Konstantinos, Mavromatis, Konstantinos, Mikhailova,Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brambilla, Evelyne, Rohde, , Manfred, Goker, Markus, Tindall, Brian J., Woyke, Tanja, Bristow, James ... Lapidus,Alla (2011). Complete genome sequence of Truepera radiovictrix type strain (RQ-24 T). Standards in Genomic Sciences, 4 (1), 91-96. doi: 10.4056/sigs.1563919 |
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2011 Journal Article Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortiumLykidis, Athanasios, Chen, Chia-Lung, Tringe, Susannah G., McHardy, Alice C., Copeland, Alex, Kyrpides, Nikos C., Hugenholtz, Philip, Macarie, Hervé, Olmos, Alejandro, Monroy, Oscar and Liu, Wen-Tso (2011). Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium. ISME Journal, 5 (1), 122-130. doi: 10.1038/ismej.2010.125 |
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2011 Journal Article Complete genome sequence of Treponema succinifaciens type strain (6091(T))Han, Cliff, Gronow, Sabine, Teshima, Hazuki, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Feng, Zeytun, Ahmed, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Huntemann, Marcel, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne-Marie, Rohde, Manfred, Goker, Markus, Woyke, Tanja, Bristow, James ... Detter, John C. (2011). Complete genome sequence of Treponema succinifaciens type strain (6091(T)). Standards in Genomic Sciences, 4 (3), 361-370. doi: 10.4056/sigs.1984594 |
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2011 Journal Article Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21(T))Chang, Yun-Juan, Land, Miriam, Hauser, Loren, Chertkov, Olga, Del Rio, Tijana Galvina, Nolan, Matt, Copeland, Alex, Tice, Hope, Cheng, Jan-Feng, Lucas, Susan, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Mavromatis, Konstantinos, Liolios, Konstantinos, Brettin, Thomas, Fiebig, Anne, Rohde, Manfred, Abt, Birte, Goker, Markus, Detter, John C., Woyke, Tanja, Bristow, James, Eisen, Jonathan A. ... Lapidus, Alla (2011). Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21(T)). Standards in Genomic Sciences, 5 (1), 97-111. doi: 10.4056/sigs.2114901 |
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2011 Journal Article Complete genome sequence of Bacteroides helcogenes type strain (P 36-108T)Pati, Amrita, Gronow, Sabine, Zeytun, Ahmet, Lapidus, Alla, Nolan, Matt, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Brambilla, Evelyne, Rohde, Manfred, Goeker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A. ... Lucas, Susan (2011). Complete genome sequence of Bacteroides helcogenes type strain (P 36-108T). Standards in Genomic Sciences, 4 (1), 45-53. doi: 10.4056/sigs.1513795 |
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2011 Journal Article Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL(T))Ivanova, Natalia, Sikorski, Johannes, Chertkov, Olga, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Feng, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Huntemann, Marcel, Liolios, Konstantinos, Pagani, Ioanna, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne-Marie, Kannan, K. Palani, Rohde, Manfred, Tindall, Brian J., Goker, Markus, Detter, John C., Woyke, Tanja ... Lapidus, Alla (2011). Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL(T)). Standards in Genomic Sciences, 4 (3), 312-321. doi: 10.4056/sigs.1824509 |
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2011 Journal Article Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2(T))Goker, Markus, Teshima, Hazuki, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Huntemann, Marcel, Liolios, Konstantinos, Ivanova, Natalia, Pagani, Ioanna, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne, Rohde, Manfred, Spring, Stefan, Detter, John C., Woyke, Tanja, Bristow, James ... Klenk, Hans-Peter (2011). Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2(T)). Standards in Genomic Sciences, 4 (3), 393-401. doi: 10.4056/sigs.2064705 |
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2011 Journal Article Complete genome sequence of Desulfobulbus propionicus type strain (1pr3 T)Pagani, Ioanna, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Desh-Pande, Shweta, Cheng, Jan-Fang, Chertkov, Olga, Davenport, Karen, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Mavromatis, Konstantinos, Ivanova, Natalia, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Brambilla, Evelyne, Kannan, K. Palani, Djao, Olivier D. Ngatchou, Rohde, Manfred ... Klenk, Hans-Peter (2011). Complete genome sequence of Desulfobulbus propionicus type strain (1pr3 T). Standards in Genomic Sciences, 4 (1), 100-110. doi: 10.4056/sigs.1613929 |
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2011 Book Chapter The enduring legacy of small subunit rRNA in microbiologyTringe, Susannah G. and Hugenholtz, Philip (2011). The enduring legacy of small subunit rRNA in microbiology. Handbook of molecular microbial ecology I: metagenomics and complementary approaches. (pp. 123-128) Hoboken, New Jersey, USA: John Wiley & Sons. doi: 10.1002/9781118010518.ch15 |
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2011 Journal Article Complete genome sequence of Tsukamurella paurometabola type strain (no. 33(T))Munk, A. Christine, Lapidus, Alla, Lucas, Susan, Nolan, Matt, Tice, Hope, Cheng, Jan-Fang, Del Rio, Tijana Glavina, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Huntemann, Marcel, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Tapia, Roxanne, Han, Cliff, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Yasawong, Montri, Brambilla, Evelyne-Marie, Rohde, Manfred, Sikorski, Johannes, Goker, Markus ... Klenk, Hans-Peter (2011). Complete genome sequence of Tsukamurella paurometabola type strain (no. 33(T)). Standards in Genomic Sciences, 4 (3), 342-351. doi: 10.4056/sigs.1894556 |
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2011 Journal Article Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20(T))Pati, Amrita, Gronow, Sabine, Lu, Megan, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Feng, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Mavromatis, Konstantinos, Mikhailova, N, Huntemann, Marcel, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Detter, John C., Brambilla, Evelyne-Marie, Rohde, Manfred, Goker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A. ... Ivanova, Natalia (2011). Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20(T)). Standards in Genomic Sciences, 5 (1), 41-49. doi: 10.4056/sigs.2164949 |
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2011 Journal Article Complete genome sequence of Thermomonospora curvata type strain (B9 T)Chertkov, Olga, Sikorski, Johannes, Nolan, Matt, Lapidus, Alla, Lucas, Susan, del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Djao, Oliver D. N., Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Han, Cliff, Detter, John C., Rohde, Manfred, Goker, Markus, Woyke, Tanja ... Kyrpides, Nikos C. (2011). Complete genome sequence of Thermomonospora curvata type strain (B9 T). Standards in Genomic Sciences, 4 (1), 13-22. doi: 10.4056/sigs.1453580 |
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2011 Journal Article Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR(T))Han, Cliffe, Mwirichia, Romano, Chertkov, Olga, Held, Brittany, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Huntemann, Marcel, Liolios, Konstantinos, Ivanova, Natalia, Pagani, Ioanna, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne, Rohde, Manfred, Spring, Stefan, Sikorski, Johannes, Goker, Markus ... Detter, John C. (2011). Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR(T)). Standards in Genomic Sciences, 4 (3), 371-380. doi: 10.4056/sigs.2004684 |
