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2010 Journal Article Complete genome sequence of Spirosoma linguale type strain (1(T))Lail, Kathleen, Sikorski, Johannes, Saunders, Elizabeth, Lapidus, Alla, Del Rio, Tijana Glavina, Copeland, Alex, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Brettin, Thomas, Detter, John C., Schuetze, Andrea, Rohde, Manfred, Tindall, Brian J. ... Chen, Feng (2010). Complete genome sequence of Spirosoma linguale type strain (1(T)). Standards in Genomic Sciences, 2 (2), 176-185. doi: 10.4056/sigs.741334 |
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2010 Journal Article Complete genome sequence of Segniliparus rotundus type strain (CDC 1076(T))Sikorski, Johannes, Lapidus, Alla, Copeland, Alex, Misra, Monica, Del Rio, Tijana Glavina, Nolan, Matt, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Jando, Marlen, Schneider, Susanne, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Chertkov, Olga, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Detter, John C. ... Klenk, Hans-Peter (2010). Complete genome sequence of Segniliparus rotundus type strain (CDC 1076(T)). Standards in Genomic Sciences, 2 (2), 203-211. doi: 10.4056/sigs.791633 |
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2010 Journal Article Complete genome sequence of Nakamurella multipartita type strain (Y-104(T))Tice, Hope, Mayilraj, Shanmugam, Sims, David, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Del Rio, Tijana Glavina, Copeland, Alex, Cheng, Jan-Fang, Meincke, Linda, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Brettin, Thomas, Rohde, Manfred, Goeker, Markus, Bristow, Jim, Eisen, Jonathan A. ... Chen, Feng (2010). Complete genome sequence of Nakamurella multipartita type strain (Y-104(T)). Standards in Genomic Sciences, 2 (2), 168-175. doi: 10.4056/sigs.721316 |
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2010 Conference Publication Is the future of metagenomics, genomics?Hugenholtz, Philip (2010). Is the future of metagenomics, genomics?. Experimental Biology 2010, Anaheim, CA, United States, 24-28 April 2010. Hoboken, NJ, United States: John Wiley & Sons. |
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2010 Journal Article Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07(T))Foster, Brian, Pukall, Ruediger, Abt, Birte, Nolan, Matt, Del Rio, Tijana Glavina, Chen, Feng, Lucas, Susan, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Chertkov, Olga, Brettin, Thomas, Han, Cliff, Detter, John C., Bruce, David, Goodwin, Lynne, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Rohde, Manfred, Goeker, Markus ... Lapidus, Alla (2010). Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07(T)). Standards in Genomic Sciences, 2 (1), 1-8. doi: 10.4056/sigs.571102 |
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2010 Journal Article PyroTagger: a fast, accurate pipeline for analysis of rRNA amplicon pyrosequence dataKunin, Victor and Hugenholtz, Philip (2010). PyroTagger: a fast, accurate pipeline for analysis of rRNA amplicon pyrosequence data. The Open Journal, 1 (1) 1, 1-8. |
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2010 Journal Article Complete genome sequence of Vulcanisaeta distributa type strain (IC-017(T))Mavromatis, Konstantinos, Sikorski, Johannes, Pabst, Elke, Teshima, Hazuki, Lapidus, Alla, Lucas, Susan, Nolan, Matt, Del Rio, Tijana Glavina, Cheng, Jan-Fang, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Spring, Stefan, Goeker, Markus, Wirth, Reinhard, Woyke, Tanja, Bristow, James, Eisen, Jonathan A. ... Kyrpides, Nikos C. (2010). Complete genome sequence of Vulcanisaeta distributa type strain (IC-017(T)). Standards in Genomic Sciences, 3 (2), 117-125. doi: 10.4056/sigs.1113067 |
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2010 Journal Article Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost communityAllagier, Martin, Reddy, Amitha, Park, Joshua I., Ivanova, Natalia, D'haeseleer, Patrik, Lowry, Steve, Sapra, Rajat, Hazen, Terry C., Simmons, Blake A., VanderGheynst, Jean S. and Hugenholtz, Philip (2010). Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community. PLoS One, 5 (1) e8812, e8812-1-e8812-9. doi: 10.1371/journal.pone.0008812 |
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2010 Journal Article Complete genome sequence of Intrasporangium calvum type strain (7 KIPT)Del Rio, Tijana Glavina, Chertkov, Olga, Yasawong, Montri, Lucas, Susan, Deshpande, Shweta, Cheng, Jan-Fang, Detter, Chris, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Pukall, Ruediger, Sikorski, Johannes, Goeker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor ... Lapidus, Alla (2010). Complete genome sequence of Intrasporangium calvum type strain (7 KIPT). Standards in Genomic Sciences, 3 (3), 294-303. doi: 10.4056/sigs.1263355 |
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2010 Journal Article Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034(T))Del Rio, Tijana Glavina, Abt, Birte, Spring, Stefan, Lapidus, Alla, Nolan, Matt, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Chen, Feng, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Saunders, Elizabeth, Detter, John C., Brettin, Thomas, Rohde, Manfred, Goeker, Markus, Bristow, Jim ... Lucas, Susan (2010). Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034(T)). Standards in Genomic Sciences, 2 (1), 87-95. doi: 10.4056/sigs.661199 |
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2010 Journal Article Complete genome sequence of Planctomyces limnophilus type strain (Mu 290(T))LaButti, Kurt, Sikorski, Johannes, Schneider, Susanne, Nolan, Matt, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Tindall, Brian J., Rohde, Manfred, Goeker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip ... Lapidus, Alla (2010). Complete genome sequence of Planctomyces limnophilus type strain (Mu 290(T)). Standards in Genomic Sciences, 3 (1), 47-56. doi: 10.4056/sigs.1052813 |
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2010 Journal Article Complete genome sequence of Arcanobacterium haemolyticum type strain (11018(T))Yasawong, Montri, Teshima, Hazuki, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Sikorski, Johannes, Pukall, Ruediger, Goeker, Markus ... Klenk, Hans-Peter (2010). Complete genome sequence of Arcanobacterium haemolyticum type strain (11018(T)). Standards in Genomic Sciences, 3 (2), 126-135. doi: 10.4056/sigs.1123072 |
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2010 Journal Article Complete genome sequence of Thermaerobacter marianensis type strain (7p75a(T))Han, Cliff, Gu, Wei, Zhang, Xiaojing, Lapidus, Alla, Nolan, Matt, Copeland, Alex, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Tapia, Roxane, Goodwin, Lynne, Pitluck, Sam, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Schneider, Susanne, Rohde, Manfred, Goeker, Markus, Pukall, Ruediger, Woyke, Tanja ... Detter, John C. (2010). Complete genome sequence of Thermaerobacter marianensis type strain (7p75a(T)). Standards in Genomic Sciences, 3 (3), 337-345. doi: 10.4056/sigs.1373474 |
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2010 Conference Publication ShotgunFunctionalizeR - an R-package for functional comparison of metagenomesKristiansson, E., Hugenholtz, P. and Dalevi, D. (2010). ShotgunFunctionalizeR - an R-package for functional comparison of metagenomes. 35th Congress of the Federation-of-European-Biochemical-Societies, Gothenburg Sweden, Jun 26-Jul 01, 2010. MALDEN: WILEY-BLACKWELL PUBLISHING, INC. |
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2010 Journal Article Complete genome sequence of Haloterrigena turkmenica type strain (4k(T))Saunders, Elisabeth, Tindall, Brian J., Faehnrich, Regine, Lapidus, Alla, Copeland, Alex, Del Rio, Tijana Glavina, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Detter, John C., Bruce, David, Goodwin, Lynne, Chain, Patrick, Pitluck, Sam, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Rohde, Manfred, Goeker, Markus, Bristow, James ... Kyrpides, Nikos C. (2010). Complete genome sequence of Haloterrigena turkmenica type strain (4k(T)). Standards in Genomic Sciences, 2 (1), 107-116. doi: 10.4056/sigs.68923 |
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2010 Journal Article Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1(T))Goeker, Markus, Held, Brittany, Lapidus, Alla, Nolan, Matt, Spring, Stefan, Yasawong, Montri, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Goodwin, Lynne, Tapia, Roxanne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Brambilla, Evelyne, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Detter, John C., Han, Cliff, Rohde, Manfred ... Klenk, Hans-Peter (2010). Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1(T)). Standards in Genomic Sciences, 3 (1), 66-75. doi: 10.4056/sigs.1072907 |
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2010 Journal Article Complete genome sequence of Thermocrinis albus type strain (HI 11/12(T))Wirth, Reinhard, Sikorski, Johannes, Brambilla, Evelyne, Misra, Monica, Lapidus, Alla, Copeland, Alex, Nolan, Matt, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Detter, John C., Tapia, Roxane, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Pati, Amrita, Anderson, Iain, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Bilek, Yvonne, Hader, Thomas, Land, Miriam, Hauser, Loren, Chang, Yun-Juan ... Klenk, Hans-Peter (2010). Complete genome sequence of Thermocrinis albus type strain (HI 11/12(T)). Standards in Genomic Sciences, 2 (2), 194-202. doi: 10.4056/sigs.761490 |
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2010 Journal Article Complete genome sequence of Streptosporangium roseum type strain (NI 9100(T))Nolan, Matt, Sikorski, Johannes, Jando, Marlen, Lucas, Susan, Lapidus, Alla, Del Rio, Tijana Glavina, Chen, Feng, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Chertkov, Olga, Sims, David, Meincke, Linda, Brettin, Thomas, Han, Cliff, Detter, John C., Bruce, David, Goodwin, Lynne, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Rohde, Manfred ... Klenk, Hans-Peter (2010). Complete genome sequence of Streptosporangium roseum type strain (NI 9100(T)). Standards in Genomic Sciences, 2 (1), 29-37. doi: 10.4056/sigs.631049 |
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2010 Journal Article Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460(T))Kiss, Hajnalka, Lang, Elke, Lapidus, Alla, Copeland, Alex, Nolan, Matt, Del Rio, Tijana Glavina, Chen, Feng, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Brettin, Thomas, Spring, Stefan, Rohde, Manfred, Goeker, Markus, Woyke, Tanja ... Klenk, Hans-Peter (2010). Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460(T)). Standards in Genomic Sciences, 2 (3), 270-279. doi: 10.4056/sigs.892105 |
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2010 Journal Article Complete genome sequence of Sulfurimonas autotrophica type strain (OK10(T))Sikorski, Johannes, Munk, Christine, Lapidus, Alla, Djao, Olivier Duplex Ngatchou, Lucas, Susan, Del Rio, Tijana Glavina, Nolan, Matt, Tice, Hope, Han, Cliff, Cheng, Jan-Fang, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Sims, David, Meincke, Linda, Brettin, Thomas, Detter, John C., Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred ... Klenk, Hans-Peter (2010). Complete genome sequence of Sulfurimonas autotrophica type strain (OK10(T)). Standards in Genomic Sciences, 3 (2), 194-202. doi: 10.4056/sigs.1173118 |
