|
2005 Journal Article SNP-VISTA: An interactive SNP visualization toolShah, Nameeta, Teplitsky, Michael V., Minovitsky, Simon, Pennacchio, Len A., Hugenholtz, Philip, Hamann, Bernd and Dubchak, Inna L. (2005). SNP-VISTA: An interactive SNP visualization tool. BMC Bioinformatics, 6 (1) 292. doi: 10.1186/1471-2105-6-292 |
|
2005 Journal Article Genome-Directed Isolation of the Key Nitrogen Fixer Leptospirillum ferrodiazotrophum sp. nov. from an Acidophilic Microbial CommunityTyson, Gene W., Lo, Ian, Baker, Brett J., Allen, Eric E., Hugenholtz, Philip and Banfield, Jillian F. (2005). Genome-Directed Isolation of the Key Nitrogen Fixer Leptospirillum ferrodiazotrophum sp. nov. from an Acidophilic Microbial Community. Applied and Environmental Microbiology, 71 (10), 6319-6324. doi: 10.1128/AEM.71.10.6319-6324.2005 |
|
2005 Journal Article Comparative metagenomics of microbial communitiesTringe, Susannah Green, von Mering, Christian, Kobayashi, Arthur, Salamov, Asaf A., Chen, Kevin, Chang, Hwai W., Podar, Mircea, Short, Jay M., Mathur, Eric J., Detter, John C., Bork, Peer, Hugenholtz, Philip and Rubin, Edward M. (2005). Comparative metagenomics of microbial communities. Science, 308 (5721), 554-557. doi: 10.1126/science.1107851 |
|
2005 Book Chapter Genus IV. Blastobacter Zavarzin 1961, 962AL emend. Sly 1985, 44Sly, Lindsay I. and Hugenholtz, Philip (2005). Genus IV. Blastobacter Zavarzin 1961, 962AL emend. Sly 1985, 44. Bergey's manual of systematic bacteriology. (pp. 452-459) edited by D. J. Brenner, N. R. Krieg and J. T. Staley. New York, U.S.A.: Springer. |
|
2005 Book Chapter Environmental shotgun sequencingTyson, Gene W. and Hugenholtz, Philip (2005). Environmental shotgun sequencing. Encyclopedia of genetics, genomics, proteomics, and bioinformatics. (pp. 1386-1391) edited by Lynn B. Jorde. West Sussex, U.K.: John Wiley & Sons. doi: 10.1002/047001153X.g205313 |
|
2005 Book Chapter Genus II. Blastomonas. Sly and Cahill 1997, 567VP emend. Hiraishi, Kuraishi and Kawahara 2000a. 1117Sly, Lindsay I. and Hugenholtz, Philip (2005). Genus II. Blastomonas. Sly and Cahill 1997, 567VP emend. Hiraishi, Kuraishi and Kawahara 2000a. 1117. Bergey's manual of systematic bacteriology: The proteobacteria. Part C. The alpha-, beta-, delta-, and epsilonproteobacteria. (pp. 258-263) edited by D. J. Brenner, N. R. Krieg and J. T. Staley. New York, U.S.A.: Springer. doi: 10.1007/0-387-29298-5_70 |
|
2004 Journal Article Reclassification of Sphaerobacter thermophilus from the subclass Sphaerobacteridae in the phylum Actinobacteria to the class Thermomicrobia (emended description) in the phylum Chloroflexi (emended description)Hugenholtz, Philip and Stackebrandt, Erko (2004). Reclassification of Sphaerobacter thermophilus from the subclass Sphaerobacteridae in the phylum Actinobacteria to the class Thermomicrobia (emended description) in the phylum Chloroflexi (emended description). International Journal of Systematic and Evolutionary Microbiology, 54 (6), 2049-2051. doi: 10.1099/ijs.0.03028-0 |
|
2004 Journal Article Chthoniobacter flavus gen. nov., sp nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum VerrucomicrobiaSangwan, Parveen, Chen, Xiaolei, Hugenholtz, Philip and Janssen, Peter H. (2004). Chthoniobacter flavus gen. nov., sp nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia. Applied and Environmental Microbiology, 70 (10), 5875-5881. doi: 10.1128/AEM.70.10.5875-5881.2004 |
|
2004 Conference Publication Magnetocardiography predicts coronary artery disease in patients presenting with acute chest painPark, JW, Hill, P, Hugenholtz, P, Chung, N and Jung, F (2004). Magnetocardiography predicts coronary artery disease in patients presenting with acute chest pain. In: ESC Congress 2004, Munich Germany, (303-304). Aug 28-Sep 01, 2004. |
|
2004 Journal Article Liquid serial dilution is inferior to solid media for isolation of cultures representative of the phylum-level diversity of soil bacteriaSchoenborn, Liesbeth, Yates, Penelope S., Grinton, Bronwyn E., Hugenholtz, Philip and Janssen, Peter H. (2004). Liquid serial dilution is inferior to solid media for isolation of cultures representative of the phylum-level diversity of soil bacteria. Applied and Environmental Microbiology, 70 (7), 4363-4366. doi: 10.1128/AEM.70.7.4363-4366.2004 |
|
2004 Journal Article Bellerophon: a program to detect chimeric sequences in multiple sequence alignmentsHuber, T, Faulkner, G and Hugenholtz, P (2004). Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics, 20 (14), 2317-2319. doi: 10.1093/bioinformatics/bth226 |
|
2004 Journal Article Community structure and metabolism through reconstruction of microbial genomes from the environmentTyson, Gene W., Chapman, Jarrod, Hugenholtz, Philip, Allen, Eric E., Ram, Rachna J., Richardson, Paul M., Solovyev, Victor V., Rubin, Edward M., Rokhsar, Daniel S. and Banfield, Jillian F. (2004). Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature, 428 (6978), 37-43. doi: 10.1038/nature02340 |
|
2004 Journal Article Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial communityGinige, MP, Hugenholtz, P, Daims, H, Wagner, M, Keller, J and Blackall, LL (2004). Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community. Applied And Environmental Microbiology, 70 (1), 588-596. doi: 10.1128/AEM.70.1.588-596.2004 |
|
2004 Book Chapter The tree of life: An overviewBaldauf, S.L., Bhattacharya, D., Cockrill, J., Hugenholtz, Philip, Pawlowski, J. and Simpson, A.G. (2004). The tree of life: An overview. Assembling the tree of life. (pp. 43-75) New York: Oxford University Press. |
|
2004 Conference Publication The tree of life - An overviewBaldauf, SL, Bhattacharya, D, Cockrill, J, Hugenholtz, P, Pawlowski, J and Simpson, AGB (2004). The tree of life - An overview. Conference on Assembling the Tree of Life, New York Ny, May 30-Jun 01, 2002. NEW YORK: OXFORD UNIV PRESS. |
|
2003 Journal Article Laboratory cultivation of widespread and previously uncultured soil bacteriaJoseph, SJ, Hugenholtz, P, Sangwan, P, Osborne, CA and Janssen, PH (2003). Laboratory cultivation of widespread and previously uncultured soil bacteria. Applied and Environmental Microbiology, 69 (12), 7210-7215. doi: 10.1128/AEM.69.12.7210-7215.2003 |
|
2003 Journal Article Extremely acidophilic protists from acid mine drainage host Rickettsiales-lineage endosymbionts that have intervening sequences in their 16S rRNA genesBaker, BJ, Hugenholtz, P, Dawson, SC and Banfield, JF (2003). Extremely acidophilic protists from acid mine drainage host Rickettsiales-lineage endosymbionts that have intervening sequences in their 16S rRNA genes. Applied and Environmental Microbiology, 69 (9), 5512-5518. doi: 10.1128/AEM.69.9.5512-5518.2003 |
|
2003 Journal Article Gemmatimonas aurantiaca gen. nov., sp nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov.Zhang, H, Sekiguchi, Y, Hanada, S, Hugenholtz, P, Kim, H, Kamagata, Y and Nakamura, K (2003). Gemmatimonas aurantiaca gen. nov., sp nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov.. International Journal of Systematic and Evolutionary Microbiology, 53 (4), 1155-1163. doi: 10.1099/ijs.0.02520-0 |
|
2003 Journal Article Fermentation of glycolate by a pure culture of a strictly anaerobic gram-positive bacterium belonging to the family LachnospiraceaeJanssen, PH and Hugenholtz, P (2003). Fermentation of glycolate by a pure culture of a strictly anaerobic gram-positive bacterium belonging to the family Lachnospiraceae. Archives of Microbiology, 179 (5), 321-328. doi: 10.1007/s00203-003-0528-5 |
|
2003 Journal Article PCR detection of Clostridium chauvoei in pure cultures and in formalin-fixed, paraffin-embedded tissuesUzal, FA, Hugenholtz, P, Blackall, LL, Petray, S, Moss, S, Assis, RA, Miyakawa, MF and Carloni, G (2003). PCR detection of Clostridium chauvoei in pure cultures and in formalin-fixed, paraffin-embedded tissues. Veterinary Microbiology, 91 (2-3), 239-248. doi: 10.1016/S0378-1135(02)00291-2 |
