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2023 Journal Article Use of continuous genotypes for genomic prediction in sugarcaneYadav, Seema, Ross, Elizabeth M., Wei, Xianming, Liu, Shouye, Nguyen, Loan To, Powell, Owen, Hickey, Lee T., Deomano, Emily, Atkin, Felicity, Voss‐Fels, Kai P. and Hayes, Ben J. (2023). Use of continuous genotypes for genomic prediction in sugarcane. The Plant Genome, 17 (1) e20417, e20417. doi: 10.1002/tpg2.20417 |
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2023 Journal Article Imputation strategies for genomic prediction using nanopore sequencingLamb, H. J., Nguyen, L. T., Copley, J. P., Engle, B. N., Hayes, B. J. and Ross, E. M. (2023). Imputation strategies for genomic prediction using nanopore sequencing. BMC Biology, 21 (1) 286, 1-18. doi: 10.1186/s12915-023-01782-0 |
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2023 Journal Article Developing flexible models for genetic evaluations in smallholder crossbred dairy farmsCostilla, R., Zeng, J., Al Kalaldeh, M., Swaminathan, M., Gibson, J.P., Ducrocq, V. and Hayes, B.J. (2023). Developing flexible models for genetic evaluations in smallholder crossbred dairy farms. Journal of Dairy Science, 106 (12), 9125-9135. doi: 10.3168/jds.2022-23135 |
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2023 Journal Article Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategiesYadav, Seema, Ross, Elizabeth M., Wei, Xianming, Powell, Owen, Hivert, Valentin, Hickey, Lee T., Atkin, Felicity, Deomano, Emily, Aitken, Karen S., Voss-Fels, Kai P. and Hayes, Ben J. (2023). Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategies. Frontiers in Plant Science, 14 1260517, 1260517. doi: 10.3389/fpls.2023.1260517 |
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2023 Conference Publication Using Digital Twin Simulations to Optimize Genetic Selection in an Admixed Beef HerdEngle, Bailey N., Moser, Gerhard, Villiers, Kira, Suarez, Mathias, Grey, Eliza, Hayes, Ben J. and Kelly, Matthew (2023). Using Digital Twin Simulations to Optimize Genetic Selection in an Admixed Beef Herd. 2023 ASAS-CSAS Annual Meeting, Albuquerque, NM United States, 16-20 July 2023. Champaign, IL United States: American Society of Animal Science. doi: 10.1093/jas/skad281.042 |
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2023 Journal Article Multi-breed genomic evaluation for tropical beef cattle when no pedigree information is availableHayes, Ben J., Copley, James, Dodd, Elsie, Ross, Elizabeth M., Speight, Shannon and Fordyce, Geoffry (2023). Multi-breed genomic evaluation for tropical beef cattle when no pedigree information is available. Genetics Selection Evolution, 55 (1) 71, 1-13. doi: 10.1186/s12711-023-00847-6 |
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2023 Journal Article Concurrently mapping quantitative trait loci associations from multiple subspecies within hybrid populationsWarburton, Christie L., Costilla, Roy, Engle, Bailey N., Moore, Stephen S., Corbet, Nicholas J., Fordyce, Geoffry, McGowan, Michael R., Burns, Brian M. and Hayes, Ben J. (2023). Concurrently mapping quantitative trait loci associations from multiple subspecies within hybrid populations. Heredity, 131 (5-6), 350-360. doi: 10.1038/s41437-023-00651-4 |
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2023 Journal Article Genomic prediction with machine learning in sugarcane, a complex highly polyploid clonally propagated crop with substantial non‐additive variation for key traitsChen, Chensong, Powell, Owen, Dinglasan, Eric, Ross, Elizabeth M., Yadav, Seema, Wei, Xianming, Atkin, Felicity, Deomano, Emily and Hayes, Ben J. (2023). Genomic prediction with machine learning in sugarcane, a complex highly polyploid clonally propagated crop with substantial non‐additive variation for key traits. The Plant Genome, 16 (4) e20390, 1-13. doi: 10.1002/tpg2.20390 |
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2023 Conference Publication New diagnostic tools for bovine vibriosisTabor, Ala, Siddle, Hannah, Juli, Sogra Banu, Raza, Ali, Ong, Chian Teng, McCosker, Kieren, Hayes, Ben and Boe-Hansen, Gry (2023). New diagnostic tools for bovine vibriosis. Northern Beef Research Update Conference, Darwin, NT Australia, 22-25 August 2023. |
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2023 Journal Article Advancing artificial intelligence to help feed the worldHayes, Ben J., Chen, Chensong, Powell, Owen, Dinglasan, Eric, Villiers, Kira, Kemper, Kathryn E. and Hickey, Lee T. (2023). Advancing artificial intelligence to help feed the world. Nature Biotechnology, 41 (9), 1-2. doi: 10.1038/s41587-023-01898-2 |
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2023 Journal Article Skim-Nanopore sequencing for routine genomic evaluation and bacterial pathogen detection in cattleLamb, H. J., Nguyen, L. T., Briody, T. E., Ambrose, R. K., Hayes, B. J., Mahony, T. J. and Ross, E. M. (2023). Skim-Nanopore sequencing for routine genomic evaluation and bacterial pathogen detection in cattle. Animal Production Science, 63 (11), 1074-1085. doi: 10.1071/an22451 |
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2023 Journal Article Predicting phenotypes of beef eating quality traitsForutan, Mehrnush, Lynn, Andrew, Aliloo, Hassan, Clark, Samuel A., McGilchrist, Peter, Polkinghorne, Rod and Hayes, Ben J. (2023). Predicting phenotypes of beef eating quality traits. Frontiers in Genetics, 14 1089490, 1089490. doi: 10.3389/fgene.2023.1089490 |
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2023 Journal Article In it for the long run: perspectives on exploiting long-read sequencing in livestock for population scale studies of structural variantsNguyen, Tuan V., Vander Jagt, Christy J., Wang, Jianghui, Daetwyler, Hans D., Xiang, Ruidong, Goddard, Michael E., Nguyen, Loan T., Ross, Elizabeth M, Hayes, Ben J., Chamberlain, Amanda J. and MacLeod, Iona M. (2023). In it for the long run: perspectives on exploiting long-read sequencing in livestock for population scale studies of structural variants. Genetics Selection Evolution, 55 (1) 9, 1-15. doi: 10.1186/s12711-023-00783-5 |
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2023 Journal Article Multi-breed genomic predictions and functional variants for fertility of tropical bullsPorto-Neto, Laercio R., Alexandre, Pamela A., Hudson, Nicholas J., Bertram, John, McWilliam, Sean M., Tan, Andre W. L., Fortes, Marina R. S., McGowan, Michael R., Hayes, Ben J. and Reverter, Antonio (2023). Multi-breed genomic predictions and functional variants for fertility of tropical bulls. PLoS One, 18 (1) e0279398, 1-19. doi: 10.1371/journal.pone.0279398 |
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2023 Book Chapter Role of the genomics-phenomics-agronomy paradigm in plant breedingChen, Chunpeng James, Rutkoski, Jessica, Schnable, James C., Murray, Seth C., Wang, Lizhi, Jin, Xiuliang, Stich, Benjamin, Crossa, Jose, Hayes, Ben J. and Zhang, Zhiwu (2023). Role of the genomics-phenomics-agronomy paradigm in plant breeding. Plant breeding reviews. (pp. 627-673) edited by Irwin Goldman. Hoboken, NJ United States: John Wiley and Sons. doi: 10.1002/9781119874157.ch10 |
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2023 Journal Article Orbivirus RNA in a banana serotine (Afronycteris nanus) bat in the Republic of the CongoCameron, Kenneth N., Mombouli, Jean-Vivien, Niama, Fabien R., Hayes, Ben, Olson, Sarah H., Smith, Brett R., Pante, Jasmine, Roy, Sanjit, Laudisoit, Anne, Goldstein, Tracey, Joly, Damien O., Bagamboula MPassi, Romain and Lange, Christian E. (2023). Orbivirus RNA in a banana serotine (Afronycteris nanus) bat in the Republic of the Congo. Ecohealth, 19 (4), 443-449. doi: 10.1007/s10393-022-01619-2 |
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2022 Conference Publication Bos indicus genome percentage effects gene expression profile and differentially expressed genes in Brahman cattle whole bloodRoss, E.M., Nguyen, L.T., Engle, B.N., Chamberlain, A.J., Kho, E. and Hayes, B.J. (2022). Bos indicus genome percentage effects gene expression profile and differentially expressed genes in Brahman cattle whole blood. 12th World Congress on Genetics Applied to Livestock Production (WCGALP), Rotterdam, The Netherlands, 3-8 July 2022. Wageningen, The Netherlands: Wageningen Academic Publishers. doi: 10.3920/978-90-8686-940-4_628 |
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2022 Conference Publication Understanding the genetics of fertility and temperament in Northern beef cattle using genomic technologiesCopley, J.P., Corbet, N.J., Allen, J.M., Laing, A.R., Fordyce, G., McGowan, M.R., Burns, B.M., Lyons, R.E. and Hayes, B.J. (2022). Understanding the genetics of fertility and temperament in Northern beef cattle using genomic technologies. 12th World Congress on Genetics Applied to Livestock Production (WCGALP), Rotterdam, The Netherlands, 3-8 July 2022. Wageningen, The Netherlands: Wageningen Academic Publishers. doi: 10.3920/978-90-8686-940-4_650 |
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2022 Conference Publication Predicted isoforms of a Brahman cow revealed by full-length transcript sequencingNguyen, L.T., Cheng, Y., Kuo, R., Hayes, B.J. and Ross, E.M. (2022). Predicted isoforms of a Brahman cow revealed by full-length transcript sequencing. 12th World Congress on Genetics Applied to Livestock Production (WCGALP), Rotterdam, Netherlands, 3 - 8 July 2022. Wageningen, Netherlands: Wageningen Academic Publishers. doi: 10.3920/978-90-8686-940-4_513 |
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2022 Conference Publication Simultaneous mapping of quantitative trait loci in multiple subspecies using hybrid populationsWarburton, C.L., Costilla, R.C., Engle, B.N. and Hayes, B.J. (2022). Simultaneous mapping of quantitative trait loci in multiple subspecies using hybrid populations. 12th World Congress on Genetics Applied to Livestock Production (WCGALP), Rotterdam, The Netherlands, 3-8 July 2022. Wageningen, The Netherlands: Wageningen Academic Publishers. doi: 10.3920/978-90-8686-940-4_179 |
