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2022 Conference Publication Digging deeper to improve yield stability: harnessing roots using new breeding technologiesHickey, L., Voss-Fels, K., Chenu, K., Smith, M., Hayes, B., Godwin, I., Djordjevic, M., Rattey, A., Godoy, J. and Robinson, H. (2022). Digging deeper to improve yield stability: harnessing roots using new breeding technologies. Australian Barley Technical Symposium, Gold Coast, QLD Australia, 22-25 August 2022. |
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2022 Journal Article Genomics applied to livestock and aquaculture breedingYáñez, José M., Xu, Peng, Carvalheiro, Roberto and Hayes, Ben (2022). Genomics applied to livestock and aquaculture breeding. Evolutionary Applications, 15 (4), 517-522. doi: 10.1111/eva.13378 |
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2022 Journal Article Evaluation of host depletion and extraction methods for shotgun metagenomic analysis of bovine vaginal samplesOng, Chian Teng, Boe-Hansen, Gry, Ross, Elizabeth M., Blackall, Patrick J., Turni, Conny, Hayes, Ben J. and Tabor, Ala E. (2022). Evaluation of host depletion and extraction methods for shotgun metagenomic analysis of bovine vaginal samples. Microbiology Spectrum, 10 (2), e0041221. doi: 10.1128/spectrum.00412-21 |
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2022 Journal Article Environmental variation effects fertility in tropical beef cattleCopley, James P., Engle, Bailey N., Ross, Elizabeth M., Speight, Shannon, Fordyce, Geoffry, Wood, Benjamin J., Voss-Fels, Kai P. and Hayes, Benjamin J. (2022). Environmental variation effects fertility in tropical beef cattle. Translational Animal Science, 6 (2) txac035, 1-10. doi: 10.1093/tas/txac035 |
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2022 Journal Article Author correction: a chickpea genetic variation map based on the sequencing of 3,366 genomesVarshney, Rajeev K., Roorkiwal, Manish, Sun, Shuai, Bajaj, Prasad, Chitikineni, Annapurna, Thudi, Mahendar, Singh, Narendra P., Du, Xiao, Upadhyaya, Hari D., Khan, Aamir W., Wang, Yue, Garg, Vanika, Fan, Guangyi, Cowling, Wallace A., Crossa, José, Gentzbittel, Laurent, Voss-Fels, Kai Peter, Valluri, Vinod Kumar, Sinha, Pallavi, Singh, Vikas K., Ben, Cécile, Rathore, Abhishek, Punna, Ramu, Singh, Muneendra K., Tar’an, Bunyamin, Bharadwaj, Chellapilla, Yasin, Mohammad, Pithia, Motisagar S., Singh, Servejeet ... Liu, Xin (2022). Author correction: a chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 604 (7905), E12-E12. doi: 10.1038/s41586-022-04660-x |
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2022 Journal Article Extensive variation in gene expression is revealed in 13 fertility-related genes using RNA-Seq, ISO-Seq, and CAGE-Seq from Brahman cattleRoss, Elizabeth M., Sanjana, Hari, Nguyen, Loan T., Cheng, YuanYuan, Moore, Stephen S. and Hayes, Ben J. (2022). Extensive variation in gene expression is revealed in 13 fertility-related genes using RNA-Seq, ISO-Seq, and CAGE-Seq from Brahman cattle. Frontiers in Genetics, 13 784663, 784663. doi: 10.3389/fgene.2022.784663 |
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2022 Journal Article Genetic variation in PLAG1 is associated with early fertility in Australian Brahman cattleEngle, Bailey N and Hayes, Ben J (2022). Genetic variation in PLAG1 is associated with early fertility in Australian Brahman cattle. Journal of Animal Science, 100 (4) skac084. doi: 10.1093/jas/skac084 |
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2022 Journal Article Technical note: overcoming host contamination in bovine vaginal metagenomic samples with nanopore adaptive sequencingOng, Chian Teng, Ross, Elizabeth M., Boe-Hansen, Gry B., Turni, Conny, Hayes, Ben J. and Tabor, Ala E. (2022). Technical note: overcoming host contamination in bovine vaginal metagenomic samples with nanopore adaptive sequencing. Journal of Animal Science, 100 (1) skab344. doi: 10.1093/jas/skab344 |
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2021 Journal Article Genomic prediction using low-coverage portable Nanopore sequencingLamb, Harrison J., Hayes, Ben J., Randhawa, Imtiaz A. S., Nguyen, Loan T. and Ross, Elizabeth M. (2021). Genomic prediction using low-coverage portable Nanopore sequencing. PLoS One, 16 (12) e0261274, e0261274. doi: 10.1371/journal.pone.0261274 |
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2021 Conference Publication Assessing the relationship between beef cattle fertility traits and novel environmental descriptors in northern AustraliaCopley, J.P., Engle, B.N., Speight, S., Fordyce, G., Ross, E.M., Voss-Fels, K.P. and Hayes, B.J. (2021). Assessing the relationship between beef cattle fertility traits and novel environmental descriptors in northern Australia. 24th Association for the Advancement of Animal Breeding and Genetics Conference, Online, 2-4 November 2021. Armidale, NSW Australia: Association for the Advancement of Animal Breeding and Genetics. |
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2021 Journal Article An Epigenetic Aging Clock for Cattle Using Portable Sequencing TechnologyHayes, Ben J., Nguyen, Loan T., Forutan, Mehrnush, Engle, Bailey N., Lamb, Harrison J., Copley, James P., Randhawa, Imtiaz A. S. and Ross, Elizabeth M. (2021). An Epigenetic Aging Clock for Cattle Using Portable Sequencing Technology. Frontiers in Genetics, 12 760450, 760450. doi: 10.3389/fgene.2021.760450 |
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2021 Conference Publication Genomic prediction of lifetime productivity in Brahman cowsEngle, B.N., Collins Snr, A. and Hayes, B.J. (2021). Genomic prediction of lifetime productivity in Brahman cows. 24th Association for the Advancement of Animal Breeding and Genetics Conference, Online, 2-4 November 2021. Armidale, NSW, Australia: Association for the Advancement of Animal Breeding and Genetics. |
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2021 Journal Article Maximal rigid subalgebras of deformations and L2-cohomologyde Santiago, Rolando, Hayes, Ben, Hoff, Daniel J. and Sinclair, Thomas (2021). Maximal rigid subalgebras of deformations and L2-cohomology. Analysis and PDE, 14 (7), 2269-2306. doi: 10.2140/apde.2021.14.2269 |
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2021 Journal Article A chickpea genetic variation map based on the sequencing of 3,366 genomesVarshney, Rajeev K., Roorkiwal, Manish, Sun, Shuai, Bajaj, Prasad, Chitikineni, Annapurna, Thudi, Mahendar, Singh, Narendra P., Du, Xiao, Upadhyaya, Hari D., Khan, Aamir W., Wang, Yue, Garg, Vanika, Fan, Guangyi, Cowling, Wallace A., Crossa, José, Gentzbittel, Laurent, Voss-Fels, Kai Peter, Valluri, Vinod Kumar, Sinha, Pallavi, Singh, Vikas K., Ben, Cécile, Rathore, Abhishek, Punna, Ramu, Singh, Muneendra K., Tar’an, Bunyamin, Bharadwaj, Chellapilla, Yasin, Mohammad, Pithia, Motisagar S., Singh, Servejeet ... Liu, Xin (2021). A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature, 599 (7886), 622-627. doi: 10.1038/s41586-021-04066-1 |
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2021 Conference Publication PHENOBANK: A platform to facilitate collaboration and genomic selection for female fertility in beef cattleWockner, K. B., Tahir, M. S., Kour, J., Tan, W. L. A., Olasege, B. S., Porto-Neto, L. R., Little, B. A., Wilson, C. R., Dollemore, W., Reverter, A., Hayes, B. and Fortes, M. R. S. (2021). PHENOBANK: A platform to facilitate collaboration and genomic selection for female fertility in beef cattle. Association for the Advancement of Animal Breeding and Genetics, Adelaide, SA, Australia, 2 - 4 November 2021. Armidale, NSW, Australia: Association for the Advancement of Animal Breeding and Genetics. |
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2021 Conference Publication Genome wide analysis of bovine enhancers and promoters across developmental stages in liverForutan, M., Vander Jagt, C.J., Ross, E., Chamberlain, A. J., Mason, B., Nguyen, L., Moore, S., Garner, J. B., Xiang, R. and Hayes, B. J. (2021). Genome wide analysis of bovine enhancers and promoters across developmental stages in liver. 24th Association for the Advancement of Animal Breeding and Genetics Conference, On-line with local hubs in Australia, 2-4 November 2021. Armidale, NSW Australia: Association for the Advancement of Animal Breeding and Genetics. |
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2021 Conference Publication Accuracy of genomic prediction in Brahman cattle using simulated genotypes from low-coverage nanopore sequencingLamb, H. J. , Nguyen, L. T., Engle, B. N., Hayes, B. J. and Ross, E. M. (2021). Accuracy of genomic prediction in Brahman cattle using simulated genotypes from low-coverage nanopore sequencing. 24th Association for the Advancement of Animal Breeding and Genetics Conference, On-line with local hubs in Australia, 2-4 November 2021. Armidale, NSW Australia: Association for the Advancement of Animal Breeding and Genetics. |
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2021 Conference Publication Multibreed genomic prediction for male fertility in tropical beef cattlePorto-Neto, L. R., Bertram, J., McWilliam, S., Fortes, M. R. S., Alexandre, P., McGowan, M. R., Hayes, B. J. and Reverter, A. (2021). Multibreed genomic prediction for male fertility in tropical beef cattle. Association for the Advancement of Animal Breeding and Genetics, Adelaide, SA, Australia, 2-4 November 2021. Armidale, NSW, Australia: Association for the Advancement of Animal Breeding and Genetics. |
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2021 Conference Publication Assessing the potential of parentage testing using portable long read sequencing technologiesRoss, E. M., Lamb, H. J., Engle, B. N. , Nguyen, L. T. and Hayes, B. J. (2021). Assessing the potential of parentage testing using portable long read sequencing technologies. 24th Association for the Advancement of Animal Breeding and Genetics Conference, On-line with local hubs in Australia, 2-4 November 2021. Armidale, NSW Australia: Association for the Advancement of Animal Breeding and Genetics. |
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2021 Journal Article Challenges and opportunities in applying genomic selection to ruminants owned by smallholder farmersBurrow, Heather M., Mrode, Raphael, Mwai, Ally Okeyo, Coffey, Mike P. and Hayes, Ben J. (2021). Challenges and opportunities in applying genomic selection to ruminants owned by smallholder farmers. Agriculture, 11 (11) 1172, 1172. doi: 10.3390/AGRICULTURE11111172 |
