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2021 Conference Publication Multibreed genomic prediction for male fertility in tropical beef cattlePorto-Neto, L. R., Bertram, J., McWilliam, S., Fortes, M. R. S., Alexandre, P., McGowan, M. R., Hayes, B. J. and Reverter, A. (2021). Multibreed genomic prediction for male fertility in tropical beef cattle. Association for the Advancement of Animal Breeding and Genetics, Adelaide, SA, Australia, 2-4 November 2021. Armidale, NSW, Australia: Association for the Advancement of Animal Breeding and Genetics. |
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2021 Conference Publication Assessing the potential of parentage testing using portable long read sequencing technologiesRoss, E. M., Lamb, H. J., Engle, B. N. , Nguyen, L. T. and Hayes, B. J. (2021). Assessing the potential of parentage testing using portable long read sequencing technologies. 24th Association for the Advancement of Animal Breeding and Genetics Conference, On-line with local hubs in Australia, 2-4 November 2021. Armidale, NSW Australia: Association for the Advancement of Animal Breeding and Genetics. |
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2021 Conference Publication PHENOBANK: A platform to facilitate collaboration and genomic selection for female fertility in beef cattleWockner, K. B., Tahir, M. S., Kour, J., Tan, W. L. A., Olasege, B. S., Porto-Neto, L. R., Little, B. A., Wilson, C. R., Dollemore, W., Reverter, A., Hayes, B. and Fortes, M. R. S. (2021). PHENOBANK: A platform to facilitate collaboration and genomic selection for female fertility in beef cattle. Association for the Advancement of Animal Breeding and Genetics, Adelaide, SA, Australia, 2 - 4 November 2021. Armidale, NSW, Australia: Association for the Advancement of Animal Breeding and Genetics. |
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2021 Conference Publication Genome wide analysis of bovine enhancers and promoters across developmental stages in liverForutan, M., Vander Jagt, C.J., Ross, E., Chamberlain, A. J., Mason, B., Nguyen, L., Moore, S., Garner, J. B., Xiang, R. and Hayes, B. J. (2021). Genome wide analysis of bovine enhancers and promoters across developmental stages in liver. 24th Association for the Advancement of Animal Breeding and Genetics Conference, On-line with local hubs in Australia, 2-4 November 2021. Armidale, NSW Australia: Association for the Advancement of Animal Breeding and Genetics. |
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2021 Journal Article Challenges and opportunities in applying genomic selection to ruminants owned by smallholder farmersBurrow, Heather M., Mrode, Raphael, Mwai, Ally Okeyo, Coffey, Mike P. and Hayes, Ben J. (2021). Challenges and opportunities in applying genomic selection to ruminants owned by smallholder farmers. Agriculture, 11 (11) 1172, 1172. doi: 10.3390/AGRICULTURE11111172 |
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2021 Journal Article A linkage disequilibrium-based approach to position unmapped SNPs in crop speciesYadav, Seema, Ross, Elizabeth M., Aitken, Karen S., Hickey, Lee T., Powell, Owen, Wei, Xianming, Voss-Fels, Kai P. and Hayes, Ben J. (2021). A linkage disequilibrium-based approach to position unmapped SNPs in crop species. BMC Genomics, 22 (1) 773, 1-9. doi: 10.1186/s12864-021-08116-w |
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2021 Book Chapter Cattle genomicsHayes, B. J. and Cocks, B. (2021). Cattle genomics. Encyclopedia of dairy sciences. (pp. 620-625) edited by John W. Fuquay. Amsterdam, Netherlands: Elsevier. doi: 10.1016/B978-0-12-818766-1.00338-X |
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2021 Journal Article Genomic diversity and breed composition of Vietnamese smallholder dairy cowsBang, Nguyen N., Hayes, Ben J., Lyons, Russell E., Randhawa, Imtiaz A. S., Gaughan, John B. and McNeill, David M. (2021). Genomic diversity and breed composition of Vietnamese smallholder dairy cows. Journal of Animal Breeding and Genetics, 139 (2), 1-16. doi: 10.1111/jbg.12651 |
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2021 Journal Article Prowler: a novel trimming algorithm for Oxford Nanopore sequence dataLee, Simon, Nguyen, Loan T., Hayes, Ben J. and Ross, Elizabeth (2021). Prowler: a novel trimming algorithm for Oxford Nanopore sequence data. Bioinformatics, 37 (21), 3936-3937. doi: 10.1093/bioinformatics/btab630 |
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2021 Journal Article Genetic parameter estimates for male and female fertility traits using genomic data to improve fertility in Australian beef cattleOlasege, Babatunde S., Tahir, Muhammad S., Gouveia, Gabriela C., Kour, Jagish, Porto-Neto, Laercio R., Hayes, Ben J. and Fortes, Marina R. S. (2021). Genetic parameter estimates for male and female fertility traits using genomic data to improve fertility in Australian beef cattle. Animal Production Science, 61 (18), 1863-1872. doi: 10.1071/an21097 |
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2021 Conference Publication Genome-wide analysis of transcription start sites across Bos indicus tissuesForutan, Mehrnush, Ross, Elizabeth, Nguyen, Loan and Hayes, Ben (2021). Genome-wide analysis of transcription start sites across Bos indicus tissues. 38th International Conference on Animal Genetics, Online, 26 - 30 July 2021. |
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2021 Conference Publication Genomic prediction using low-coverage Nanopore sequencingLamb, Harrison, Nguyen, Loan T., Hayes, Ben J., Randhawa, Imtiaz A. S. and Ross, Elizabeth M. (2021). Genomic prediction using low-coverage Nanopore sequencing. 38th International Society of Animal Genetics, Virtual, 26 - 30 July 2021. |
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2021 Conference Publication A Bos indicus epigenetic clock predicts age from tail hairNguyen, Loan T., Forutan, Mehrnush, Hayes, Ben J. and Ross, Elizabeth M. (2021). A Bos indicus epigenetic clock predicts age from tail hair. 38th International Society of Animal Genetics (ISAG), Virtual, 26 - 30 July 2021. |
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2021 Conference Publication The genetic complexity of scurs development in cattleRandhawa, Imtiaz A. S., Lyons, Russell E., Hayes, Ben J. and McGowan, Michael R. (2021). The genetic complexity of scurs development in cattle. 38th International Society of Animal Genetics (ISAG), Virtual, 26-30 July 2021. |
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2021 Journal Article Evolution of tissue and developmental specificity of transcription start sites in Bos taurus indicusForutan, Mehrnush, Ross, Elizabeth, Chamberlain, Amanda J., Nguyen, Loan, Mason, Brett, Moore, Stephen, Garner, Josie B., Xiang, Ruidong and Hayes, Ben J. (2021). Evolution of tissue and developmental specificity of transcription start sites in Bos taurus indicus. Communications Biology, 4 (1) 829, 1-14. doi: 10.1038/s42003-021-02340-6 |
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2021 Journal Article Sequences of previously unknown rhabdoviruses detected in bat samples from the Republic of the CongoCameron, Kenneth N., Niama, Fabien R., Hayes, Ben, Mbala, Placide, Olson, Sarah H., Takuo, Jean Michel, Ondzie, Alain, Le Doux Diffo, Joseph, Smith, Brett R., Pante, Jasmine, Laudisoit, Anne, LeBreton, Matthew, Tamufe, Ubald, Makuwa, Maria, Joly, Damien O., Goldstein, Tracey, Muyembe Tamfum, Jean J., Bagamboula MPassi, Romain and Lange, Christian E. (2021). Sequences of previously unknown rhabdoviruses detected in bat samples from the Republic of the Congo. Vector-Borne and Zoonotic Diseases, 21 (7), 552-555. doi: 10.1089/vbz.2020.2736 |
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2021 Journal Article Multiple country and breed genomic prediction of tick resistance in beef cattleCardoso, Fernando Flores, Matika, Oswald, Djikeng, Appolinaire, Mapholi, Ntanganedzeni, Burrow, Heather M., Yokoo, Marcos Jun Iti, Campos, Gabriel Soares, Gulias-Gomes, Claudia Cristina, Riggio, Valentina, Pong-Wong, Ricardo, Engle, Bailey, Porto-Neto, Laercio, Maiwashe, Azwihangwisi and Hayes, Ben J. (2021). Multiple country and breed genomic prediction of tick resistance in beef cattle. Frontiers in Immunology, 12 620847, 1-11. doi: 10.3389/fimmu.2021.620847 |
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2021 Journal Article Interrogating the bovine reproductive tract metagenomes using culture-independent approaches: a systematic reviewOng, Chian Teng, Turni, Conny, Blackall, Patrick J., Boe-Hansen, Gry, Hayes, Ben J. and Tabor, Ala E. (2021). Interrogating the bovine reproductive tract metagenomes using culture-independent approaches: a systematic review. Animal Microbiome, 3 (1) 41, 41. doi: 10.1186/s42523-021-00106-3 |
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2021 Journal Article Genomic selection and genetic gain for nut yield in an Australian macadamia breeding populationO’Connor, Katie M., Hayes, Ben J., Hardner, Craig M., Alam, Mobashwer, Henry, Robert J. and Topp, Bruce L. (2021). Genomic selection and genetic gain for nut yield in an Australian macadamia breeding population. BMC Genomics, 22 (1) 370, 1-12. doi: 10.1186/s12864-021-07694-z |
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2021 Journal Article Analysis of polycerate mutants reveals the evolutionary co-option of HOXD1 for horn patterning in BovidaeAllais-Bonnet, Aurélie, Hintermann, Aurélie, Deloche, Marie-Christine, Cornette, Raphaël, Bardou, Philippe, Naval-Sanchez, Marina, Pinton, Alain, Haruda, Ashleigh, Grohs, Cécile, Zakany, Jozsef, Bigi, Daniele, Medugorac, Ivica, Putelat, Olivier, Greyvenstein, Ockert, Hadfield, Tracy, Jemaa, Slim Ben, Bunevski, Gjoko, Menzi, Fiona, Hirter, Nathalie, Paris, Julia M., Hedges, John, Palhiere, Isabelle, Rupp, Rachel, Lenstra, Johannes A., Gidney, Louisa, Lesur, Joséphine, Schafberg, Renate, Stache, Michael, Wandhammer, Marie-Dominique ... Capitan, Aurélien (2021). Analysis of polycerate mutants reveals the evolutionary co-option of HOXD1 for horn patterning in Bovidae. Molecular Biology and Evolution, 38 (6), 2260-2272. doi: 10.1093/molbev/msab021 |
