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2023 Journal Article Mapping the spatial proteome of head and neck tumors: key immune mediators and metabolic determinants in the tumor microenvironmentJhaveri, Niyati, Ben Cheikh, Bassem, Nikulina, Nadezhda, Ma, Ning, Klymyshyn, Dmytro, DeRosa, James, Mihani, Ritu, Pratapa, Aditya, Kassim, Yasmin, Bommakanti, Sidharth, Shang, Olive, Berry, Shannon, Ihley, Nicholas, McLane, Michael, He, Yan, Zheng, Yi, Monkman, James, Cooper, Caroline, O'Byrne, Ken, Anand, Bhaskar, Prater, Michael, Basu, Subham, Hughes, Brett G. M., Kulasinghe, Arutha and Braubach, Oliver (2023). Mapping the spatial proteome of head and neck tumors: key immune mediators and metabolic determinants in the tumor microenvironment. GEN Biotechnology, 2 (5), 418-434. doi: 10.1089/genbio.2023.0029 |
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2023 Journal Article Pathological features associated with metastasis in patients with early invasive (pT1) colorectal carcinoma in colorectal polypsBrown, Ian, Zammit, Andrew P., Bettington, Mark, Cooper, Caroline, Gill, Anthony J., Agoston, Agoston and Odze, Robert (2023). Pathological features associated with metastasis in patients with early invasive (pT1) colorectal carcinoma in colorectal polyps. Histopathology, 83 (4), 591-606. doi: 10.1111/his.14970 |
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2023 Journal Article Looking beyond workforce parity: addressing gender inequity in pathologyMcKenzie, Catriona A., Gupta, Ruta, Jackett, Louise, Anderson, Lyndal, Chen, Vivien, Dahlstrom, Jane E., Dray, Michael, Farshid, Gelareh, Hemmings, Chris, Karim, Rooshdiya, Kench, James G., Klebe, Sonja, Kramer, Nicole, Kumarasinghe, Priyanthi, Maclean, Fiona, Morey, Adrienne, Nguyen, Minh Anh, O’Toole, Sandra, Rowbotham, Beverley, Salisbury, Elizabeth, Scolyer, Richard A., Stewart, Katie, Waring, Lynette, Cooper, Caroline L. and Cooper, Wendy A. (2023). Looking beyond workforce parity: addressing gender inequity in pathology. Pathology, 55 (6), 760-771. doi: 10.1016/j.pathol.2023.07.002 |
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2023 Journal Article A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissuesTan, Xiao, Grice, Laura F., Tran, Minh, Mulay, Onkar, Monkman, James, Blick, Tony, Vo, Tuan, Almeida, Ana Clara, da Silva Motta, Jarbas, Fernandes de Moura, Karen, Machado‐Souza, Cleber, Souza‐Fonseca‐Guimaraes, Paulo, Baena, Cristina Pellegrino, de Noronha, Lucia, Guimaraes, Fernanda Simoes Fortes, Luu, Hung N., Drennon, Tingsheng, Williams, Stephen, Stern, Jacob, Uytingco, Cedric, Pan, Liuliu, Nam, Andy, Cooper, Caroline, Short, Kirsty, Belz, Gabrielle T., Souza‐Fonseca‐Guimaraes, Fernando, Kulasinghe, Arutha and Nguyen, Quan (2023). A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissues. Immunology, 170 (3), 401-418. doi: 10.1111/imm.13679 |
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2022 Journal Article Occult small bowel adenocarcinoma in a Crohn disease strictureKaazan, Patricia, Slack, Timothy, Cooper, Caroline, Saad, Nivene and Martin, Neal (2022). Occult small bowel adenocarcinoma in a Crohn disease stricture. Internal Medicine Journal, 52 (6), 1093-1094. doi: 10.1111/imj.15811 |
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2022 Journal Article A multidisciplinary approach to rectal metastasis to the ovary: Krukenburg tumoursLe, Zhuang Hui Mark, Ng, Jessica Yan-Seen, Cooper, Caroline and Bloomfield, Ian (2022). A multidisciplinary approach to rectal metastasis to the ovary: Krukenburg tumours. ANZ Journal of Surgery, 92 (3) ans.17092, 583-585. doi: 10.1111/ans.17092 |
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2022 Journal Article Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signaturesKulasinghe, Arutha, Tan, Chin Wee, dos Santos Miggiolaro, Anna Flavia Ribeiro, Monkman, James, SadeghiRad, Habib, Bhuva, Dharmesh D., da Silva Motta Junior, Jarbas, Vaz de Paula, Caroline Busatta, Nagashima, Seigo, Baena, Cristina Pellegrino, Souza-Fonseca-Guimaraes, Paulo, de Noronha, Lucia, McCulloch, Timothy, Rodrigues Rossi, Gustavo, Cooper, Caroline, Tang, Benjamin, Short, Kirsty R., Davis, Melissa J., Souza-Fonseca-Guimaraes, Fernando, Belz, Gabrielle T. and O'Byrne, Ken (2022). Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures. European Respiratory Journal, 59 (6) 2101881, 1-19. doi: 10.1183/13993003.01881-2021 |
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2021 Journal Article Germline ERBB3 mutation in familial non-small cell lung carcinoma: expanding ErbB’s role in oncogenesisMcInerney-Leo, Aideen M., Chew, Hui Yi, Inglis, Po-Ling, Leo, Paul J., Joseph, Shannon R., Cooper, Caroline L., Okano, Satomi, Hassall, Tim, Anderson, Lisa, Bowman, Rayleen V., Gattas, Michael, Harris, Jessica E., Marshall, Mhairi S., Shaw, Janet G., Wheeler, Lawrie, Yang, Ian A., Brown, Matthew A., Fong, Kwun M., Simpson, Fiona and Duncan, Emma L. (2021). Germline ERBB3 mutation in familial non-small cell lung carcinoma: expanding ErbB’s role in oncogenesis. Human Molecular Genetics, 30 (24), 2393-2401. doi: 10.1093/hmg/ddab172 |
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2021 Journal Article Endothelial cells are not productively infected by SARS‐CoV‐2Schimmel, Lilian, Chew, Keng Yih, Stocks, Claudia J., Yordanov, Teodor E., Essebier, Patricia, Kulasinghe, Arutha, Monkman, James, Santos Miggiolaro, Anna Flavia Ribeiro, Cooper, Caroline, Noronha, Lucia, Schroder, Kate, Lagendijk, Anne Karine, Labzin, Larisa I., Short, Kirsty R. and Gordon, Emma J. (2021). Endothelial cells are not productively infected by SARS‐CoV‐2. Clinical and Translational Immunology, 10 (10) e1350, e1350. doi: 10.1002/cti2.1350 |
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2021 Journal Article A single-cell and spatially resolved atlas of human breast cancersWu, Sunny Z., Al-Eryani, Ghamdan, Roden, Daniel Lee, Junankar, Simon, Harvey, Kate, Andersson, Alma, Thennavan, Aatish, Wang, Chenfei, Torpy, James R., Bartonicek, Nenad, Wang, Taopeng, Larsson, Ludvig, Kaczorowski, Dominik, Weisenfeld, Neil I., Uytingco, Cedric R., Chew, Jennifer G., Bent, Zachary W., Chan, Chia-Ling, Gnanasambandapillai, Vikkitharan, Dutertre, Charles-Antoine, Gluch, Laurence, Hui, Mun N., Beith, Jane, Parker, Andrew, Robbins, Elizabeth, Segara, Davendra, Cooper, Caroline, Mak, Cindy, Chan, Belinda ... Swarbrick, Alexander (2021). A single-cell and spatially resolved atlas of human breast cancers. Nature Genetics, 53 (9), 1334-1347. doi: 10.1038/s41588-021-00911-1 |
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2021 Journal Article Targeting DNA damage response and replication stress in pancreatic cancerDreyer, Stephan B., Upstill-Goddard, Rosie, Paulus-Hock, Viola, Paris, Clara, Lampraki, Eirini-Maria, Dray, Eloise, Serrels, Bryan, Caligiuri, Giuseppina, Rebus, Selma, Plenker, Dennis, Galluzzo, Zachary, Brunton, Holly, Cunningham, Richard, Tesson, Mathias, Nourse, Craig, Bailey, Ulla-Maja, Jones, Marc D., Moran-Jones, Kim, Wright, Derek W., Duthie, Fraser, Oien, Karin, Evers, Lisa, McKay, Colin J., McGregor, Grant A., Gulati, Aditi, Brough, Rachel, Bajrami, Ilirjana, Pettitt, Stephan, Dziubinski, Michele L. ... Sansom, Owen J. (2021). Targeting DNA damage response and replication stress in pancreatic cancer. Gastroenterology, 160 (1), 362-377.e13. doi: 10.1053/j.gastro.2020.09.043 |
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2020 Journal Article Therapeutic implications of immune-profiling and EGFR expression in salivary gland carcinomaGuazzo, Emily, Cooper, Caroline, Wilkinson, Lisa, Feng, Sophie, King, Brigid, Simpson, Fiona, Porceddu, Sandro, Panizza, Benedict and Coward, Jermaine I G (2020). Therapeutic implications of immune-profiling and EGFR expression in salivary gland carcinoma. Head and neck, 43 (3) hed.26529, 768-777. doi: 10.1002/hed.26529 |
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2020 Journal Article Concurrent native valve infective endocarditis and myocarditis: the key role of F-18-FDG PET/CTReyaldeen, Reza, Wahi, Sudhir, Cole, Chris, Kaye, Gerald, Law, Phillip, Cooper, Caroline and Chong, Adrian (2020). Concurrent native valve infective endocarditis and myocarditis: the key role of F-18-FDG PET/CT. Journal of Nuclear Cardiology, 28 (4), 1781-1784. doi: 10.1007/s12350-020-02108-1 |
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2020 Journal Article Validation and characterisation of prognostically significant PD-L1+ immune cells in HPV+ oropharyngeal squamous cell carcinomaYoung, Richard J., Bressel, Mathias, Porceddu, Sandro, Cernelc, Janez, Savas, Peter, Liu, Howard, Urban, Damien, Thai, Alesha A., Cooper, Caroline, Fua, Tsien, Neeson, Paul, Rischin, Danny and Solomon, Benjamin (2020). Validation and characterisation of prognostically significant PD-L1+ immune cells in HPV+ oropharyngeal squamous cell carcinoma. Oral Oncology, 101 104516, 1-7. doi: 10.1016/j.oraloncology.2019.104516 |
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2020 Journal Article Stromal cell diversity associated with immune evasion in human triple-negative breast cancerWu, Sunny Z., Roden, Daniel L., Wang, Chenfei, Holliday, Holly, Harvey, Kate, Cazet, Aurélie S., Murphy, Kendelle J., Pereira, Brooke, Al-Eryani, Ghamdan, Bartonicek, Nenad, Hou, Rui, Torpy, James R., Junankar, Simon, Chan, Chia-Ling, Lam, Chuan En, Hui, Mun N., Gluch, Laurence, Beith, Jane, Parker, Andrew, Robbins, Elizabeth, Segara, Davendra, Mak, Cindy, Cooper, Caroline, Warrier, Sanjay, Forrest, Alistair, Powell, Joseph, O'Toole, Sandra, Cox, Thomas R., Timpson, Paul ... Swarbrick, Alexander (2020). Stromal cell diversity associated with immune evasion in human triple-negative breast cancer. EMBO Journal, 39 (19) e104063, 1-20. doi: 10.15252/embj.2019104063 |
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2019 Journal Article Australian consensus statement for best practice ROS1 testing in advanced non-small cell lung cancerPavlakis, Nick, Cooper, Caroline, John, Thomas, Kao, Steven, Klebe, Sonja, Lee, Chee Khoon, Leong, Trishe, Millward, Michael, O'Byrne, Ken, Russell, Prudence A., Solomon, Benjamin, Cooper, Wendy A. and Fox, Stephen (2019). Australian consensus statement for best practice ROS1 testing in advanced non-small cell lung cancer. Pathology, 51 (7), 673-680. doi: 10.1016/j.pathol.2019.08.006 |
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2019 Journal Article An ErbB2/c-Src axis links bioenergetics with PRC2 translation to drive epigenetic reprogramming and mammary tumorigenesisSmith, Harvey W., Hirukawa, Alison, Sanguin-Gendreau, Virginie, Nandi, Ipshita, Dufour, Catherine R., Zuo, Dongmei, Tandoc, Kristofferson, Leibovitch, Matthew, Singh, Salendra, Rennhack, Jonathan P., Swiatnicki, Matthew, Lavoie, Cynthia, Papavasiliou, Vasilios, Temps, Carolin, Carragher, Neil O., Unciti-Broceta, Asier, Savage, Paul, Basik, Mark, van Hoef, Vincent, Larsson, Ola, Cooper, Caroline L., Vargas Calderon, Ana Cristina, Beith, Jane, Millar, Ewan, Selinger, Christina, Giguère, Vincent, Park, Morag, Harris, Lyndsay N., Varadan, Vinay ... Muller, William J. (2019). An ErbB2/c-Src axis links bioenergetics with PRC2 translation to drive epigenetic reprogramming and mammary tumorigenesis. Nature Communications, 10 (1) 2901, 2901. doi: 10.1038/s41467-019-10681-4 |
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2019 Journal Article Nesidioblastosis in an Adult with Short Gut Syndrome and Type 2 DiabetesWong, Mimi, Conway, Luke, Cooper, Caroline, Sinha, Ashim and Nandi, Nirjhar (2019). Nesidioblastosis in an Adult with Short Gut Syndrome and Type 2 Diabetes. AACE Clinical Case Reports, 5 (6), e375-e379. doi: 10.4158/ACCR-2019-0243 |
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2019 Journal Article Identification of an excellent prognosis subset of human papillomavirus-associated oropharyngeal cancer patients by quantification of intratumoral CD103+ immune cell abundanceSolomon, B., Young, R. J., Bressel, M., Cernelc, J., Savas, P., Liu, H., Urban, D., Thai, A., Cooper, C., Fua, T., Neeson, P., Loi, S., Porceddu, S. V. and Rischin, D. (2019). Identification of an excellent prognosis subset of human papillomavirus-associated oropharyngeal cancer patients by quantification of intratumoral CD103+ immune cell abundance. Annals of Oncology, 30 (10), 1638-1646. doi: 10.1093/annonc/mdz271 |
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2019 Journal Article Phenotypic characterization of circulating lung cancer cells for clinically actionable targetsKulasinghe, Arutha, Kapeleris, Joanna, Cooper, Carolina, Warkiani, Majid Ebrahimi, O’Byrne, Kenneth and Punyadeera, Chamindie (2019). Phenotypic characterization of circulating lung cancer cells for clinically actionable targets. Cancers, 11 (3) 380, 380. doi: 10.3390/cancers11030380 |
