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2024 Conference Publication Spatial profiling of the tumor microenvironment in head and neck squamous cell carcinoma revealed immune cell type infiltration into the TME as a predictor of immunotherapy responseSadeghirad, Habib, Tan, Chin Wee, Liu, Ning, Monkman, James, Cooper, Caroline, O’Byrne, Ken, Davis, Melissa, Hughes, Brett and Kulasinghe, Arutha (2024). Spatial profiling of the tumor microenvironment in head and neck squamous cell carcinoma revealed immune cell type infiltration into the TME as a predictor of immunotherapy response. American Association for Cancer Research Annual Meeting 2024, San Diego, CA United States, 5-10 April 2024. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.am2024-1154 |
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2024 Journal Article In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infectionTan, Chin Wee, Chen, Jinjin, Liu, Ning, Bhuva, Dharmesh D., Blick, Tony, Monkman, James, Cooper, Caroline, Kharbanda, Malvika, Feher, Kristen, Phipson, Belinda, Killingbeck, Emily E., Pan, Liuliu, Kim, Youngmi, Liang, Yan, Nam, Andy, Leon, Michael, Souza-Fonseca-Guimaraes, Paulo, Nagashima, Seigo, Camargo Martins, Ana Paula, Machado-Souza, Cleber, de Noronha, Lucia, Tang, Benjamin, Short, Kirsty, Fraser, John, Belz, Gabrielle T., Souza-Fonseca-Guimaraes, Fernando, Kulasinghe, Arutha and Davis, Melissa J. (2024). In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infection. eBioMedicine, 101 105016, 1-4. doi: 10.1016/j.ebiom.2024.105016 |
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2024 Journal Article Disseminated thymoma in pleural fluid: an unusual caseBerry, Kate and Cooper, Caroline (2024). Disseminated thymoma in pleural fluid: an unusual case. Diagnostic Cytopathology, 52 (2), 131-135. doi: 10.1002/dc.25266 |
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2024 Journal Article Detailed DNA methylation characterisation of phyllodes tumours identifies a signature of malignancy and distinguishes phyllodes from metaplastic breast carcinomaMeyer, Braydon, Stirzaker, Clare, Ramkomuth, Sonny, Harvey, Kate, Chan, Belinda, Lee, Cheok Soon, Karim, Rooshdiya, Deng, Niantao, Avery-Kiejda, Kelly A., Scott, Rodney J., Lakhani, Sunil, Fox, Stephen, Robbins, Elizabeth, Shin, Joo-Shik, Beith, Jane, Gill, Anthony, Sioson, Loretta, Chan, Charles, Krishnaswamy, Mrudula, Cooper, Caroline, Warrier, Sanjay, Mak, Cindy, Rasko, John E.J., Bailey, Charles G., Swarbrick, Alexander, Clark, Susan J., O'Toole, Sandra and Pidsley, Ruth (2024). Detailed DNA methylation characterisation of phyllodes tumours identifies a signature of malignancy and distinguishes phyllodes from metaplastic breast carcinoma. Journal of Pathology, 262 (4), 480-494. doi: 10.1002/path.6250 |
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2023 Journal Article Real-world prevalence of PD-L1 expression in non-small cell lung cancer: an Australia-wide multi-centre retrospective observational studyRussell, Prudence A., Farrall, Alexandra L., Prabhakaran, Sarita, Asadi, Khashayar, Barrett, Wade, Cooper, Caroline, Cooper, Wendy, Cotton, Samuel, Duhig, Edwina, Egan, Matthew, Fox, Stephen, Godbolt, David, Gupta, Shilpa, Hassan, Aniza, Leslie, Connull, Leong, Trishe, Moffat, David, Qiu, Min Ru, Sivasubramaniam, Vanathi, Skerman, Joanna, Snell, Cameron, Walsh, Michael, Whale, Karen and Klebe, Sonja (2023). Real-world prevalence of PD-L1 expression in non-small cell lung cancer: an Australia-wide multi-centre retrospective observational study. Pathology, 55 (7), 922-928. doi: 10.1016/j.pathol.2023.08.008 |
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2023 Conference Publication EP06.02-01 Prevalence of PD-L1 Expression in Non-Small Cell Lung Cancer: a Real-World Australian PerspectivePrabhakaran, S., Russell, P.A., Farrall, A.L., Asadi, K., Barrett, W., Cooper, C., Cooper, W., Duhig, E.E., Egan, M., Fox, S., Godbolt, D., Gupta, S., Cotton, S., Leslie, C., Leong, T., Moffat, D., Qiu, M., Sivasubramaniam, V., Snell, C., Skerman, J., Walsh, M., Whale, K. and Klebe, S. (2023). EP06.02-01 Prevalence of PD-L1 Expression in Non-Small Cell Lung Cancer: a Real-World Australian Perspective. 2023 World Conference on Lung Cancer, Singapore, 9-12 September 2023. New York, NY United States: Elsevier. doi: 10.1016/j.jtho.2023.09.886 |
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2023 Journal Article Pathological features associated with metastasis in patients with early invasive (pT1) colorectal carcinoma in colorectal polypsBrown, Ian, Zammit, Andrew P., Bettington, Mark, Cooper, Caroline, Gill, Anthony J., Agoston, Agoston and Odze, Robert (2023). Pathological features associated with metastasis in patients with early invasive (pT1) colorectal carcinoma in colorectal polyps. Histopathology, 83 (4), 591-606. doi: 10.1111/his.14970 |
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2023 Journal Article Looking beyond workforce parity: addressing gender inequity in pathologyMcKenzie, Catriona A., Gupta, Ruta, Jackett, Louise, Anderson, Lyndal, Chen, Vivien, Dahlstrom, Jane E., Dray, Michael, Farshid, Gelareh, Hemmings, Chris, Karim, Rooshdiya, Kench, James G., Klebe, Sonja, Kramer, Nicole, Kumarasinghe, Priyanthi, Maclean, Fiona, Morey, Adrienne, Nguyen, Minh Anh, O’Toole, Sandra, Rowbotham, Beverley, Salisbury, Elizabeth, Scolyer, Richard A., Stewart, Katie, Waring, Lynette, Cooper, Caroline L. and Cooper, Wendy A. (2023). Looking beyond workforce parity: addressing gender inequity in pathology. Pathology, 55 (6), 760-771. doi: 10.1016/j.pathol.2023.07.002 |
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2023 Journal Article Mapping the spatial proteome of head and neck tumors: key immune mediators and metabolic determinants in the tumor microenvironmentJhaveri, Niyati, Ben Cheikh, Bassem, Nikulina, Nadezhda, Ma, Ning, Klymyshyn, Dmytro, DeRosa, James, Mihani, Ritu, Pratapa, Aditya, Kassim, Yasmin, Bommakanti, Sidharth, Shang, Olive, Berry, Shannon, Ihley, Nicholas, McLane, Michael, He, Yan, Zheng, Yi, Monkman, James, Cooper, Caroline, O'Byrne, Ken, Anand, Bhaskar, Prater, Michael, Basu, Subham, Hughes, Brett G. M., Kulasinghe, Arutha and Braubach, Oliver (2023). Mapping the spatial proteome of head and neck tumors: key immune mediators and metabolic determinants in the tumor microenvironment. GEN Biotechnology, 2 (5), 418-434. doi: 10.1089/genbio.2023.0029 |
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2023 Conference Publication High-plex spatial profiling of cutaneous squamous cell carcinoma to identify biomarkers associated with clinical outcomes: The cMIC studyLadwa, R., Monkman, J., Sadeghirad, H., Cooper, C., Belz, G., Bowman, J., Schaider, H., Liu, H., Kulasinghe, A. and Porceddu, S. (2023). High-plex spatial profiling of cutaneous squamous cell carcinoma to identify biomarkers associated with clinical outcomes: The cMIC study. ESMO Congress 2023, Madrid, Spain, 20-24 October 2023. Amsterdam, Netherlands: Elsevier. doi: 10.1016/j.annonc.2023.09.2278 |
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2023 Journal Article A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissuesTan, Xiao, Grice, Laura F., Tran, Minh, Mulay, Onkar, Monkman, James, Blick, Tony, Vo, Tuan, Almeida, Ana Clara, da Silva Motta, Jarbas, Fernandes de Moura, Karen, Machado‐Souza, Cleber, Souza‐Fonseca‐Guimaraes, Paulo, Baena, Cristina Pellegrino, de Noronha, Lucia, Guimaraes, Fernanda Simoes Fortes, Luu, Hung N., Drennon, Tingsheng, Williams, Stephen, Stern, Jacob, Uytingco, Cedric, Pan, Liuliu, Nam, Andy, Cooper, Caroline, Short, Kirsty, Belz, Gabrielle T., Souza‐Fonseca‐Guimaraes, Fernando, Kulasinghe, Arutha and Nguyen, Quan (2023). A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissues. Immunology, 170 (3), 401-418. doi: 10.1111/imm.13679 |
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2022 Conference Publication High-plex spatial proteomic profiling of immunotherapy response groups in head and neck cancer identifies tissue signatures associated with therapy responseKulasinghe, Arutha, Sadeghirad, Habib, Liu, Ning, Monkman, James, Tan, Chin Wee, Cooper, Caroline, Church, Sarah, Schneider, Fabian, Thaagard, Jeppe, Mansfield, James, O’byrne, Kenneth, Davis, Melissa and Hughes, Brett (2022). High-plex spatial proteomic profiling of immunotherapy response groups in head and neck cancer identifies tissue signatures associated with therapy response. SITC 37th Annual Meeting (SITC 2022), Boston, MA United States, 8–12 November 2022. London, United Kingdom: BMJ Group. doi: 10.1136/jitc-2022-sitc2022.0117 |
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2022 Journal Article Occult small bowel adenocarcinoma in a Crohn disease strictureKaazan, Patricia, Slack, Timothy, Cooper, Caroline, Saad, Nivene and Martin, Neal (2022). Occult small bowel adenocarcinoma in a Crohn disease stricture. Internal Medicine Journal, 52 (6), 1093-1094. doi: 10.1111/imj.15811 |
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2022 Journal Article A multidisciplinary approach to rectal metastasis to the ovary: Krukenburg tumoursLe, Zhuang Hui Mark, Ng, Jessica Yan-Seen, Cooper, Caroline and Bloomfield, Ian (2022). A multidisciplinary approach to rectal metastasis to the ovary: Krukenburg tumours. ANZ Journal of Surgery, 92 (3) ans.17092, 583-585. doi: 10.1111/ans.17092 |
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2022 Journal Article Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signaturesKulasinghe, Arutha, Tan, Chin Wee, dos Santos Miggiolaro, Anna Flavia Ribeiro, Monkman, James, SadeghiRad, Habib, Bhuva, Dharmesh D., da Silva Motta Junior, Jarbas, Vaz de Paula, Caroline Busatta, Nagashima, Seigo, Baena, Cristina Pellegrino, Souza-Fonseca-Guimaraes, Paulo, de Noronha, Lucia, McCulloch, Timothy, Rodrigues Rossi, Gustavo, Cooper, Caroline, Tang, Benjamin, Short, Kirsty R., Davis, Melissa J., Souza-Fonseca-Guimaraes, Fernando, Belz, Gabrielle T. and O'Byrne, Ken (2022). Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures. European Respiratory Journal, 59 (6) 2101881, 1-19. doi: 10.1183/13993003.01881-2021 |
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2021 Journal Article Germline ERBB3 mutation in familial non-small cell lung carcinoma: expanding ErbB’s role in oncogenesisMcInerney-Leo, Aideen M., Chew, Hui Yi, Inglis, Po-Ling, Leo, Paul J., Joseph, Shannon R., Cooper, Caroline L., Okano, Satomi, Hassall, Tim, Anderson, Lisa, Bowman, Rayleen V., Gattas, Michael, Harris, Jessica E., Marshall, Mhairi S., Shaw, Janet G., Wheeler, Lawrie, Yang, Ian A., Brown, Matthew A., Fong, Kwun M., Simpson, Fiona and Duncan, Emma L. (2021). Germline ERBB3 mutation in familial non-small cell lung carcinoma: expanding ErbB’s role in oncogenesis. Human Molecular Genetics, 30 (24), 2393-2401. doi: 10.1093/hmg/ddab172 |
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2021 Journal Article Endothelial cells are not productively infected by SARS‐CoV‐2Schimmel, Lilian, Chew, Keng Yih, Stocks, Claudia J., Yordanov, Teodor E., Essebier, Patricia, Kulasinghe, Arutha, Monkman, James, Santos Miggiolaro, Anna Flavia Ribeiro, Cooper, Caroline, Noronha, Lucia, Schroder, Kate, Lagendijk, Anne Karine, Labzin, Larisa I., Short, Kirsty R. and Gordon, Emma J. (2021). Endothelial cells are not productively infected by SARS‐CoV‐2. Clinical and Translational Immunology, 10 (10) e1350, e1350. doi: 10.1002/cti2.1350 |
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2021 Journal Article A single-cell and spatially resolved atlas of human breast cancersWu, Sunny Z., Al-Eryani, Ghamdan, Roden, Daniel Lee, Junankar, Simon, Harvey, Kate, Andersson, Alma, Thennavan, Aatish, Wang, Chenfei, Torpy, James R., Bartonicek, Nenad, Wang, Taopeng, Larsson, Ludvig, Kaczorowski, Dominik, Weisenfeld, Neil I., Uytingco, Cedric R., Chew, Jennifer G., Bent, Zachary W., Chan, Chia-Ling, Gnanasambandapillai, Vikkitharan, Dutertre, Charles-Antoine, Gluch, Laurence, Hui, Mun N., Beith, Jane, Parker, Andrew, Robbins, Elizabeth, Segara, Davendra, Cooper, Caroline, Mak, Cindy, Chan, Belinda ... Swarbrick, Alexander (2021). A single-cell and spatially resolved atlas of human breast cancers. Nature Genetics, 53 (9), 1334-1347. doi: 10.1038/s41588-021-00911-1 |
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2021 Journal Article Targeting DNA damage response and replication stress in pancreatic cancerDreyer, Stephan B., Upstill-Goddard, Rosie, Paulus-Hock, Viola, Paris, Clara, Lampraki, Eirini-Maria, Dray, Eloise, Serrels, Bryan, Caligiuri, Giuseppina, Rebus, Selma, Plenker, Dennis, Galluzzo, Zachary, Brunton, Holly, Cunningham, Richard, Tesson, Mathias, Nourse, Craig, Bailey, Ulla-Maja, Jones, Marc D., Moran-Jones, Kim, Wright, Derek W., Duthie, Fraser, Oien, Karin, Evers, Lisa, McKay, Colin J., McGregor, Grant A., Gulati, Aditi, Brough, Rachel, Bajrami, Ilirjana, Pettitt, Stephan, Dziubinski, Michele L. ... Sansom, Owen J. (2021). Targeting DNA damage response and replication stress in pancreatic cancer. Gastroenterology, 160 (1), 362-377.e13. doi: 10.1053/j.gastro.2020.09.043 |
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2020 Journal Article Therapeutic implications of immune-profiling and EGFR expression in salivary gland carcinomaGuazzo, Emily, Cooper, Caroline, Wilkinson, Lisa, Feng, Sophie, King, Brigid, Simpson, Fiona, Porceddu, Sandro, Panizza, Benedict and Coward, Jermaine I G (2020). Therapeutic implications of immune-profiling and EGFR expression in salivary gland carcinoma. Head and neck, 43 (3) hed.26529, 768-777. doi: 10.1002/hed.26529 |
