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2023

Journal Article

Moving beyond heritability in the search for coral adaptive potential

Richards, Thomas J., McGuigan, Katrina, Aguirre, J. David, Humanes, Adriana, Bozec, Yves‐Marie, Mumby, Peter J. and Riginos, Cynthia (2023). Moving beyond heritability in the search for coral adaptive potential. Global Change Biology, 29 (14), 3869-3882. doi: 10.1111/gcb.16719

Moving beyond heritability in the search for coral adaptive potential

2023

Journal Article

Reproducibility in ecology and evolution: Minimum standards for data and code

Jenkins, Gareth B., Beckerman, Andrew P., Bellard, Céline, Benítez‐López, Ana, Ellison, Aaron M., Foote, Christopher G., Hufton, Andrew L., Lashley, Marcus A., Lortie, Christopher J., Ma, Zhaoxue, Moore, Allen J., Narum, Shawn R., Nilsson, Johan, O'Boyle, Bridget, Provete, Diogo B., Razgour, Orly, Rieseberg, Loren, Riginos, Cynthia, Santini, Luca, Sibbett, Benjamin and Peres‐Neto, Pedro R. (2023). Reproducibility in ecology and evolution: Minimum standards for data and code. Ecology and Evolution, 13 (5) e9961, e9961. doi: 10.1002/ece3.9961

Reproducibility in ecology and evolution: Minimum standards for data and code

2023

Journal Article

Research priorities for the sustainability of coral-rich western Pacific seascapes

Cumming, Graeme S., Adamska, Maja, Barnes, Michele L., Barnett, Jon, Bellwood, David R., Cinner, Joshua E., Cohen, Philippa J., Donelson, Jennifer M., Fabricius, Katharina, Grafton, R. Quentin, Grech, Alana, Gurney, Georgina G., Hoegh-Guldberg, Ove, Hoey, Andrew S., Hoogenboom, Mia O., Lau, Jacqueline, Lovelock, Catherine E., Lowe, Ryan, Miller, David J., Morrison, Tiffany H., Mumby, Peter J., Nakata, Martin, Pandolfi, John M., Peterson, Garry D., Pratchett, Morgan S., Ravasi, Timothy, Riginos, Cynthia, Rummer, Jodie L., Schaffelke, Britta ... Wilson, Shaun K. (2023). Research priorities for the sustainability of coral-rich western Pacific seascapes. Regional Environmental Change, 23 (2) 66, 66. doi: 10.1007/s10113-023-02051-0

Research priorities for the sustainability of coral-rich western Pacific seascapes

2023

Other Outputs

Scripts and analyses from: Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef, 2023, Evolutionary Applications

Riginos, Cynthia, Matias, Ambrocio, Popovic, Iva and Thia, Joshua (2023). Scripts and analyses from: Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef, 2023, Evolutionary Applications. The University of Queensland. (Dataset) doi: 10.48610/0765ed7

Scripts and analyses from: Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef, 2023, Evolutionary Applications

2022

Journal Article

Comparative phylogeography in the genomic age: opportunities and challenges

McGaughran, Angela, Liggins, Libby, Marske, Katharine A., Dawson, Michael N, Schiebelhut, Lauren M., Lavery, Shane D., Knowles, L. Lacey, Moritz, Craig and Riginos, Cynthia (2022). Comparative phylogeography in the genomic age: opportunities and challenges. Journal of Biogeography, 49 (12), 2130-2144. doi: 10.1111/jbi.14481

Comparative phylogeography in the genomic age: opportunities and challenges

2022

Journal Article

Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef

Matias, Ambrocio Melvin A., Popovic, Iva, Thia, Joshua A., Cooke, Ira R., Torda, Gergely, Lukoschek, Vimoksalehi, Bay, Line K., Kim, Sun W. and Riginos, Cynthia (2022). Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef. Evolutionary Applications, 16 (2), 1-18. doi: 10.1111/eva.13435

Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef

2022

Journal Article

Influence of offshore oil and gas structures on seascape ecological connectivity

McLean, Dianne L., Ferreira, Luciana C., Benthuysen, Jessica A., Miller, Karen J., Schläppy, Marie-Lise, Ajemian, Matthew J., Berry, Oliver, Birchenough, Silvana N. R., Bond, Todd, Boschetti, Fabio, Bull, Ann S., Claisse, Jeremy T., Condie, Scott A., Consoli, Pierpaolo, Coolen, Joop W. P., Elliott, Michael, Fortune, Irene S., Fowler, Ashley M., Gillanders, Bronwyn M., Harrison, Hugo B., Hart, Kristen M., Henry, Lea-Anne, Hewitt, Chad L., Hicks, Natalie, Hock, Karlo, Hyder, Kieran, Love, Milton, Macreadie, Peter I., Miller, Robert J. ... Thums, Michele (2022). Influence of offshore oil and gas structures on seascape ecological connectivity. Global Change Biology, 28 (11), 3515-3536. doi: 10.1111/gcb.16134

Influence of offshore oil and gas structures on seascape ecological connectivity

2022

Journal Article

Deep connections: divergence histories with gene flow in mesophotic Agaricia corals

Prata, Katharine E., Riginos, Cynthia, Gutenkunst, Ryan N., Latijnhouwers, Kelly R. W., Sánchez, Juan A., Englebert, Norbert, Hay, Kyra B. and Bongaerts, Pim (2022). Deep connections: divergence histories with gene flow in mesophotic Agaricia corals. Molecular Ecology, 31 (9), 2511-2527. doi: 10.1111/mec.16391

Deep connections: divergence histories with gene flow in mesophotic Agaricia corals

2022

Journal Article

Mytilus galloprovincialis (Mediterranean mussel)

Bonham, Vicki, Shields, Jody and Riginos, Cynthia (2022). Mytilus galloprovincialis (Mediterranean mussel). CABI Compendium, CABI Compendium. doi: 10.1079/cabicompendium.73756

Mytilus galloprovincialis (Mediterranean mussel)

2022

Journal Article

Can sea snakes slither through seascape structure? Comparative phylogeography and population genetics of Hydrophis group sea snakes in Australia and Southeast Asia

Garcia, Vhon Oliver, Riginos, Cynthia and Lukoschek, Vimoksalehi (2022). Can sea snakes slither through seascape structure? Comparative phylogeography and population genetics of Hydrophis group sea snakes in Australia and Southeast Asia. Frontiers of Biogeography, 14 (3) 56342. doi: 10.21425/f5fbg56342

Can sea snakes slither through seascape structure? Comparative phylogeography and population genetics of Hydrophis group sea snakes in Australia and Southeast Asia

2022

Book Chapter

Incorporating genetic measures of connectivity and adaptation in marine spatial planning for corals

Riginos, Cynthia and Beger, Maria (2022). Incorporating genetic measures of connectivity and adaptation in marine spatial planning for corals. Coral reef conservation and restoration in the omics age. (pp. 7-33) edited by Madeleine J. H. van Oppen and Manuel Aranda Lastra. Cham, Switzerland: Springer International Publishing. doi: 10.1007/978-3-031-07055-6_2

Incorporating genetic measures of connectivity and adaptation in marine spatial planning for corals

2021

Other Outputs

Selecting coral species for reef restoration

Madin, Joshua S., McWilliam, Michael, Quigley, Kate, Bay, Line K., Bellwood, David, Doropoulos, Christopher, Fernandes, Leanne, Harrison, Peter, Hoey, Andrew S., Mumby, Peter J., Ortiz, Juan C., Richards, Zoe T., Riginos, Cynthia, Schiettekatte, Nina, Suggett, David J. and van Oppen, Madeleine J. H. (2021). Selecting coral species for reef restoration. doi: 10.1101/2021.11.03.467181

Selecting coral species for reef restoration

2021

Journal Article

Poor data stewardship will hinder global genetic diversity surveillance

Toczydlowski, Rachel H., Liggins, Libby, Gaither, Michelle R., Anderson, Tanner J., Barton, Randi L., Berg, Justin T., Beskid, Sofia G., Davis, Beth, Delgado, Alonso, Farrell, Emily, Ghoojaei, Maryam, Himmelsbach, Nan, Holmes, Ann E., Queeno, Samantha R., Trinh, Thienthanh, Weyand, Courtney A., Bradburd, Gideon S., Riginos, Cynthia, Toonen, Robert J. and Crandall, Eric D. (2021). Poor data stewardship will hinder global genetic diversity surveillance. Proceedings of the National Academy of Sciences, 118 (34) e2107934118, 1-3. doi: 10.1073/pnas.2107934118

Poor data stewardship will hinder global genetic diversity surveillance

2021

Journal Article

Global connections with some genomic differentiation occur between Indo‐Pacific and Atlantic Ocean wahoo, a large circumtropical pelagic fish

Haro‐Bilbao, Isabel, Riginos, Cynthia, Baldwin, John D., Zischke, Mitchell, Tibbetts, Ian R., Thia, Joshua A. and Bernardi, Giacomo (2021). Global connections with some genomic differentiation occur between Indo‐Pacific and Atlantic Ocean wahoo, a large circumtropical pelagic fish. Journal of Biogeography, 48 (8), 2053-2067. doi: 10.1111/jbi.14135

Global connections with some genomic differentiation occur between Indo‐Pacific and Atlantic Ocean wahoo, a large circumtropical pelagic fish

2021

Journal Article

Women in biogeography

Meynard, Christine N., Bernardi, Giacomo, Fraser, Ceridwen, Masters, Judith, Riginos, Cynthia, Sanmartin, Isabel, Tolley, Krystal A., Dawson, Michael N and Kreft, Holger (2021). Women in biogeography. Journal of Biogeography, 48 (9) jbi.14223, 2117-2120. doi: 10.1111/jbi.14223

Women in biogeography

2021

Journal Article

Green, yellow or black? Genetic differentiation and adaptation signatures in a highly migratory marine turtle

Álvarez-Varas, Rocío, Rojas-Hernández, Noemi, Heidemeyer, Maike, Riginos, Cynthia, Benítez, Hugo A., Araya-Donoso, Raúl, Reséndiz, Eduardo, Lara-Uc, Mónica, Godoy, Daniel A., Muñoz-Pérez, Juan Pablo, Alarcón-Ruales, Daniela E., Alfaro-Shigueto, Joanna, Ortiz-Alvarez, Clara, Mangel, Jeffrey C., Vianna, Juliana A. and Véliz, David (2021). Green, yellow or black? Genetic differentiation and adaptation signatures in a highly migratory marine turtle. Proceedings of the Royal Society B: Biological Sciences, 288 (1954) 20210754, 20210754. doi: 10.1098/rspb.2021.0754

Green, yellow or black? Genetic differentiation and adaptation signatures in a highly migratory marine turtle

2021

Journal Article

Skeletal deformities and meristic trait variations are common in the intertidal fish Bathygobius cocosensis (Perciformes‐Gobiidae)

Malard, Lucie, Riginos, Cynthia and McGuigan, Katrina (2021). Skeletal deformities and meristic trait variations are common in the intertidal fish Bathygobius cocosensis (Perciformes‐Gobiidae). Journal of Fish Diseases, 44 (6), 665-673. doi: 10.1111/jfd.13327

Skeletal deformities and meristic trait variations are common in the intertidal fish Bathygobius cocosensis (Perciformes‐Gobiidae)

2021

Journal Article

Genetic and phenotypic variation exhibit both predictable and stochastic patterns across an intertidal fish metapopulation

Thia, Joshua A., McGuigan, Katrina, Liggins, Libby, Figueira, Will F., Bird, Christopher E., Mather, Andrew, Evans, Jennifer L. and Riginos, Cynthia (2021). Genetic and phenotypic variation exhibit both predictable and stochastic patterns across an intertidal fish metapopulation. Molecular Ecology, 30 (18) mec.15829, 4392-4414. doi: 10.1111/mec.15829

Genetic and phenotypic variation exhibit both predictable and stochastic patterns across an intertidal fish metapopulation

2020

Journal Article

Pre‐introduction introgression contributes to parallel differentiation and contrasting hybridization outcomes between invasive and native marine mussels

Popovic, Iva, Bierne, Nicolas, Gaiti, Federico, Tanurdžić, Miloš and Riginos, Cynthia (2020). Pre‐introduction introgression contributes to parallel differentiation and contrasting hybridization outcomes between invasive and native marine mussels. Journal of Evolutionary Biology, 34 (1) jeb.13746, 175-192. doi: 10.1111/jeb.13746

Pre‐introduction introgression contributes to parallel differentiation and contrasting hybridization outcomes between invasive and native marine mussels

2020

Journal Article

Sharing and reporting benefits from biodiversity research

Marden, Emily, Abbott, Richard J., Austerlitz, Frederic, Ortiz-Barrientos, Daniel, Baucom, Regina S., Bongaerts, Pim, Bonin, Aurelie, Bonneaud, Camille, Browne, Luke, Alex Buerkle, C., Caicedo, Ana L., Coltman, David W., Cruzan, Mitchell B., Davison, Angus, DeWoody, J. Andrew, Dumbrell, Alex J., Emerson, Brent C., Fountain-Jones, Nicholas M., Gillespie, Rosemary, Giraud, Tatiana, Hansen, Michael M., Hodgins, Kathryn A., Heuertz, Myriam, Hirase, Shotaro, Hooper, Rebecca, Hohenlohe, Paul, Kane, Nolan C., Kelley, Joanna L., Kinziger, Andrew P. ... Rieseberg, Loren H. (2020). Sharing and reporting benefits from biodiversity research. Molecular Ecology, 30 (5) mec.15702, 1103-1107. doi: 10.1111/mec.15702

Sharing and reporting benefits from biodiversity research