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2024 Journal Article High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predatorPopovic, Iva, Bergeron, Lucie A., Bozec, Yves-Marie, Waldvogel, Ann-Marie, Howitt, Samantha M., Damjanovic, Katarina, Patel, Frances, Cabrera, Maria G., Wörheide, Gert, Uthicke, Sven and Riginos, Cynthia (2024). High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predator. PLoS Genetics, 20 (2) e1011129, e1011129. doi: 10.1371/journal.pgen.1011129 |
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2024 Journal Article Exploring coral speciation: multiple sympatric Stylophora pistillata taxa along a divergence continuum on the Great Barrier ReefMeziere, Zoe, Popovic, Iva, Prata, Katharine, Ryan, Isobel, Pandolfi, John and Riginos, Cynthia (2024). Exploring coral speciation: multiple sympatric Stylophora pistillata taxa along a divergence continuum on the Great Barrier Reef. Evolutionary Applications, 17 (1) e13644, 1-17. doi: 10.1111/eva.13644 |
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2024 Other Outputs Shallow Agaricia genomic dataRiginos, Cynthia, Prata, Katharine and Bongaerts, Pim (2024). Shallow Agaricia genomic data. The University of Queensland. (Dataset) doi: 10.48610/62bc9a5 |
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2024 Other Outputs Scripts and data from: High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predatorRiginos, Cynthia and Popovic, Iva (2024). Scripts and data from: High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predator. The University of Queensland. (Dataset) doi: 10.48610/ad122d0 |
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2023 Journal Article Comparative landscape genomics has arrived with a splashRiginos, Cynthia and Jahnke, Marlene (2023). Comparative landscape genomics has arrived with a splash. Molecular Ecology, 32 (24), 6725-6728. doi: 10.1111/mec.17204 |
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2023 Other Outputs CORDAP R&D technology roadmap for understanding natural adaptation and assisted evolution of corals to climate changeBay, Line, Ortiz, Juan, Humanes, Adriana, Riginos, Cynthia, Baums, Iliana, Scharfenstein, Hugo, Aranda, Manuel, Peixoto, Raquel, Niehaus, Amanda, Le Port, Agnès, van Oppen, Madeleine, Voolstra, Christian, Baker, Andrew, Kenkel, Carly, Aguirre, J. David, Guest, James, Lasky, Jesse, Hendry, Andrew, Schoepf, Verena, Reusch, Thorsten, Angilletta, Jr, Michael, Bhagooli, Ranjeet, Schmidt-Roach, Sebastian, Suggett, David, Wilson, Alastair, Abadi, Maram, Razak, Tries, Baria-Rodriguez, Maria, Duarte, Carlos ... Palumbi, Stephen (2023). CORDAP R&D technology roadmap for understanding natural adaptation and assisted evolution of corals to climate change. Canberra, ACT, Australia: CORDAP. doi: 10.62542/gq8m3cy5 |
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2023 Other Outputs Sequences and scriptsRiginos, Cynthia, Byrne, Ilha, Popovic, Iva and Uthicke, Sven (2023). Sequences and scripts. The University of Queensland. (Dataset) doi: 10.48610/3076584 |
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2023 Journal Article Selecting coral species for reef restorationMadin, Joshua S., McWilliam, Michael, Quigley, Kate, Bay, Line K., Bellwood, David, Doropoulos, Christopher, Fernandes, Leanne, Harrison, Peter, Hoey, Andrew S., Mumby, Peter J., Ortiz, Juan C., Richards, Zoe T., Riginos, Cynthia, Schiettekatte, Nina M. D., Suggett, David J. and van Oppen, Madeleine J. H. (2023). Selecting coral species for reef restoration. Journal of Applied Ecology, 60 (8), 1537-1544. doi: 10.1111/1365-2664.14447 |
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2023 Journal Article The importance of timely metadata curation to the global surveillance of genetic diversityCrandall, Eric D., Toczydlowski, Rachel H., Liggins, Libby, Holmes, Ann E., Ghoojaei, Maryam, Gaither, Michelle R., Wham, Briana E., Pritt, Andrea L., Noble, Cory, Anderson, Tanner J., Barton, Randi L., Berg, Justin T., Beskid, Sofia G., Delgado, Alonso, Farrell, Emily, Himmelsbach, Nan, Queeno, Samantha R., Trinh, Thienthanh, Weyand, Courtney, Bentley, Andrew, Deck, John, Riginos, Cynthia, Bradburd, Gideon S. and Toonen, Robert J. (2023). The importance of timely metadata curation to the global surveillance of genetic diversity. Conservation Biology, 37 (4) e14061, e14061. doi: 10.1111/cobi.14061 |
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2023 Journal Article Moving beyond heritability in the search for coral adaptive potentialRichards, Thomas J., McGuigan, Katrina, Aguirre, J. David, Humanes, Adriana, Bozec, Yves‐Marie, Mumby, Peter J. and Riginos, Cynthia (2023). Moving beyond heritability in the search for coral adaptive potential. Global Change Biology, 29 (14), 3869-3882. doi: 10.1111/gcb.16719 |
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2023 Journal Article Reproducibility in ecology and evolution: Minimum standards for data and codeJenkins, Gareth B., Beckerman, Andrew P., Bellard, Céline, Benítez‐López, Ana, Ellison, Aaron M., Foote, Christopher G., Hufton, Andrew L., Lashley, Marcus A., Lortie, Christopher J., Ma, Zhaoxue, Moore, Allen J., Narum, Shawn R., Nilsson, Johan, O'Boyle, Bridget, Provete, Diogo B., Razgour, Orly, Rieseberg, Loren, Riginos, Cynthia, Santini, Luca, Sibbett, Benjamin and Peres‐Neto, Pedro R. (2023). Reproducibility in ecology and evolution: Minimum standards for data and code. Ecology and Evolution, 13 (5) e9961, e9961. doi: 10.1002/ece3.9961 |
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2023 Journal Article Research priorities for the sustainability of coral-rich western Pacific seascapesCumming, Graeme S., Adamska, Maja, Barnes, Michele L., Barnett, Jon, Bellwood, David R., Cinner, Joshua E., Cohen, Philippa J., Donelson, Jennifer M., Fabricius, Katharina, Grafton, R. Quentin, Grech, Alana, Gurney, Georgina G., Hoegh-Guldberg, Ove, Hoey, Andrew S., Hoogenboom, Mia O., Lau, Jacqueline, Lovelock, Catherine E., Lowe, Ryan, Miller, David J., Morrison, Tiffany H., Mumby, Peter J., Nakata, Martin, Pandolfi, John M., Peterson, Garry D., Pratchett, Morgan S., Ravasi, Timothy, Riginos, Cynthia, Rummer, Jodie L., Schaffelke, Britta ... Wilson, Shaun K. (2023). Research priorities for the sustainability of coral-rich western Pacific seascapes. Regional Environmental Change, 23 (2) 66, 66. doi: 10.1007/s10113-023-02051-0 |
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2023 Other Outputs Scripts and analyses from: Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef, 2023, Evolutionary ApplicationsRiginos, Cynthia, Matias, Ambrocio, Popovic, Iva and Thia, Joshua (2023). Scripts and analyses from: Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef, 2023, Evolutionary Applications. The University of Queensland. (Dataset) doi: 10.48610/0765ed7 |
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2022 Journal Article Comparative phylogeography in the genomic age: opportunities and challengesMcGaughran, Angela, Liggins, Libby, Marske, Katharine A., Dawson, Michael N, Schiebelhut, Lauren M., Lavery, Shane D., Knowles, L. Lacey, Moritz, Craig and Riginos, Cynthia (2022). Comparative phylogeography in the genomic age: opportunities and challenges. Journal of Biogeography, 49 (12), 2130-2144. doi: 10.1111/jbi.14481 |
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2022 Journal Article Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier ReefMatias, Ambrocio Melvin A., Popovic, Iva, Thia, Joshua A., Cooke, Ira R., Torda, Gergely, Lukoschek, Vimoksalehi, Bay, Line K., Kim, Sun W. and Riginos, Cynthia (2022). Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef. Evolutionary Applications, 16 (2), 1-18. doi: 10.1111/eva.13435 |
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2022 Journal Article Influence of offshore oil and gas structures on seascape ecological connectivityMcLean, Dianne L., Ferreira, Luciana C., Benthuysen, Jessica A., Miller, Karen J., Schläppy, Marie-Lise, Ajemian, Matthew J., Berry, Oliver, Birchenough, Silvana N. R., Bond, Todd, Boschetti, Fabio, Bull, Ann S., Claisse, Jeremy T., Condie, Scott A., Consoli, Pierpaolo, Coolen, Joop W. P., Elliott, Michael, Fortune, Irene S., Fowler, Ashley M., Gillanders, Bronwyn M., Harrison, Hugo B., Hart, Kristen M., Henry, Lea-Anne, Hewitt, Chad L., Hicks, Natalie, Hock, Karlo, Hyder, Kieran, Love, Milton, Macreadie, Peter I., Miller, Robert J. ... Thums, Michele (2022). Influence of offshore oil and gas structures on seascape ecological connectivity. Global Change Biology, 28 (11), 3515-3536. doi: 10.1111/gcb.16134 |
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2022 Journal Article Poor data stewardship will hinder global genetic diversity surveillance (vol 118, e2107934118, 2021)Toczydlowski, Rachel H., Liggins, Libby, Gaither, Michelle R., Anderson, Tanner J., Barton, Randi L., Berg, Justin T., Beskid, Sofia G., Davis, Beth, Delgado, Alonso, Farrell, Emily, Ghoojaei, Maryam, Himmelsbach, Nan, Holmes, Ann E., Queeno, Samantha R., Trinh, Thienthanh, Weyand, Courtney A., Bradburd, Gideon S., Riginos, Cynthia, Toonen, Robert J. and Crandall, Eric D. (2022). Poor data stewardship will hinder global genetic diversity surveillance (vol 118, e2107934118, 2021). Proceedings of the National Academy of Sciences of the United States of America, 119 (7) e2200329119. doi: 10.1073/pnas.2200329119 |
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2022 Journal Article Deep connections: divergence histories with gene flow in mesophotic Agaricia coralsPrata, Katharine E., Riginos, Cynthia, Gutenkunst, Ryan N., Latijnhouwers, Kelly R. W., Sánchez, Juan A., Englebert, Norbert, Hay, Kyra B. and Bongaerts, Pim (2022). Deep connections: divergence histories with gene flow in mesophotic Agaricia corals. Molecular Ecology, 31 (9), 2511-2527. doi: 10.1111/mec.16391 |
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2022 Journal Article Mytilus galloprovincialis (Mediterranean mussel)Bonham, Vicki, Shields, Jody and Riginos, Cynthia (2022). Mytilus galloprovincialis (Mediterranean mussel). CABI Compendium, CABI Compendium. doi: 10.1079/cabicompendium.73756 |
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2022 Journal Article Can sea snakes slither through seascape structure? Comparative phylogeography and population genetics of Hydrophis group sea snakes in Australia and Southeast AsiaGarcia, Vhon Oliver, Riginos, Cynthia and Lukoschek, Vimoksalehi (2022). Can sea snakes slither through seascape structure? Comparative phylogeography and population genetics of Hydrophis group sea snakes in Australia and Southeast Asia. Frontiers of Biogeography, 14 (3) 56342. doi: 10.21425/f5fbg56342 |
