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2022 Journal Article Knockout of Sf‐Caspase‐1 generates apoptosis‐resistant Sf9 cell lines: implications for baculovirus expressionMalmanche, Henry, Marcellin, Esteban and Reid, Steven (2022). Knockout of Sf‐Caspase‐1 generates apoptosis‐resistant Sf9 cell lines: implications for baculovirus expression. Biotechnology Journal, 17 (7) 2100532, 2100532. doi: 10.1002/biot.202100532 |
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2022 Conference Publication Engineering novel regulation factors in Clostridium autoethanogenum using rationale from a test-system in Escherichia coliHeffernan, James, Gonzalez Garcia, Axa, Warden, Andrew, Nielsen, Lars K. and Marcellin, Esteban (2022). Engineering novel regulation factors in Clostridium autoethanogenum using rationale from a test-system in Escherichia coli. Centre of Excellence in Synthetic Biology Annual Conference, Australia, 3-6 April 2022. |
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2022 Journal Article A genome-scale metabolic model of Methanoperedens nitroreducens: assessing bioenergetics and thermodynamic feasibilityHe, Bingqing, Cai, Chen, McCubbin, Tim, Muriel, Jorge Carrasco, Sonnenschein, Nikolaus, Hu, Shihu, Yuan, Zhiguo and Marcellin, Esteban (2022). A genome-scale metabolic model of Methanoperedens nitroreducens: assessing bioenergetics and thermodynamic feasibility. Metabolites, 12 (4) 314, 314. doi: 10.3390/metabo12040314 |
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2022 Journal Article Absolute proteome quantification in the gas-fermenting acetogen Clostridium autoethanogenumValgepea, Kaspar, Talbo, Gert, Takemori, Nobuaki, Takemori, Ayako, Ludwig, Christina, Mahamkali, Vishnuvardhan, Mueller, Alexander P., Tappel, Ryan, Köpke, Michael, Simpson, Séan Dennis, Nielsen, Lars Keld and Marcellin, Esteban (2022). Absolute proteome quantification in the gas-fermenting acetogen Clostridium autoethanogenum. mSystems, 7 (2), 1. doi: 10.1128/msystems.00026-22 |
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2022 Journal Article Modelling apoptosis resistance in CHO cells with CRISPR‐mediated knock‐outs of Bak1, Bax, and BokMacDonald, Michael A., Barry, Craig, Groves, Teddy, Martínez, Verónica S., Gray, Peter P., Baker, Kym, Shave, Evan, Mahler, Stephen, Munro, Trent, Marcellin, Esteban and Nielsen, Lars K. (2022). Modelling apoptosis resistance in CHO cells with CRISPR‐mediated knock‐outs of Bak1, Bax, and Bok. Biotechnology and Bioengineering, 119 (6), 1380-1391. doi: 10.1002/bit.28062 |
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2022 Journal Article Multi-omic characterisation of Streptomyces hygroscopicus NRRL 30439: detailed assessment of its secondary metabolic potentialBarry, Craig P., Gillane, Rosemary, Talbo, Gert H., Plan, Manual, Palfreyman, Robin, Haber-Stuk, Andrea K., Power, John, Nielsen, Lars K. and Marcellin, Esteban (2022). Multi-omic characterisation of Streptomyces hygroscopicus NRRL 30439: detailed assessment of its secondary metabolic potential. Molecular Omics, 18 (3), 226-236. doi: 10.1039/d1mo00150g |
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2022 Journal Article Advances in systems metabolic engineering of autotrophic carbon oxide-fixing biocatalysts towards a circular economyPavan, Marilene, Reinmets, Kristina, Garg, Shivani, Mueller, Alexander P., Marcellin, Esteban, Köpke, Michael and Valgepea, Kaspar (2022). Advances in systems metabolic engineering of autotrophic carbon oxide-fixing biocatalysts towards a circular economy. Metabolic Engineering, 71, 117-141. doi: 10.1016/j.ymben.2022.01.015 |
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2021 Journal Article High methanol‐to‐formate ratios induce butanol production in Eubacterium limosumWood, Jamin C., Marcellin, Esteban, Plan, Manuel R. and Virdis, Bernardino (2021). High methanol‐to‐formate ratios induce butanol production in Eubacterium limosum. Microbial Biotechnology, 15 (5), 1542-1549. doi: 10.1111/1751-7915.13963 |
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2021 Journal Article Strategies to improve viability of a circular carbon bioeconomy – A techno-economic review of microbial electrosynthesis and gas fermentationWood, Jamin C., Grové, Johannes, Marcellin, Esteban, Heffernan, James K., Hu, Shihu, Yuan, Zhiguo and Virdis, Bernardino (2021). Strategies to improve viability of a circular carbon bioeconomy – A techno-economic review of microbial electrosynthesis and gas fermentation. Water Research, 201 117306, 1-14. doi: 10.1016/j.watres.2021.117306 |
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2021 Journal Article Roles and opportunities for microbial anaerobic oxidation of methane in natural and engineered systemsCai, Chen, Zhang, Xueqin, Wu, Mengxiong, Liu, Tao, Lai, Chun-Yu, Frank, Joshua, He, Bingqing, Marcellin, Esteban, Guo, Jianhua, Hu, Shihu and Yuan, Zhiguo (2021). Roles and opportunities for microbial anaerobic oxidation of methane in natural and engineered systems. Energy and Environmental Science, 14 (9), 4803-4830. doi: 10.1039/d1ee00708d |
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2021 Journal Article Comparative Economic Analysis Between Endogenous and Recombinant Production of Hyaluronic AcidTorres-Acosta, Mario A., Castaneda-Aponte, Héctor M., Mora-Galvez, Liliana M., Gil-Garzon, Monica R., Banda-Magaña, Martin P., Marcellin, Esteban, Mayolo-Deloisa, Karla and Licona-Cassani, Cuauhtemoc (2021). Comparative Economic Analysis Between Endogenous and Recombinant Production of Hyaluronic Acid. Frontiers in Bioengineering and Biotechnology, 9 680278, 680278. doi: 10.3389/fbioe.2021.680278 |
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2021 Journal Article Network analyses predict small RNAs that might modulate gene expression in the testis and epididymis of Bos indicus bullsde Lima, Andressa O., Afonso, Juliana, Edson, Janette, Marcellin, Esteban, Palfreyman, Robin, Porto-Neto, Laercio R., Reverter, Antonio and Fortes, Marina R. S. (2021). Network analyses predict small RNAs that might modulate gene expression in the testis and epididymis of Bos indicus bulls. Frontiers in Genetics, 12 610116, 610116. doi: 10.3389/fgene.2021.610116 |
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2021 Journal Article Towards sustainable bioinoculants: a fermentation strategy for high cell density cultivation of Paraburkholderia sp. SOS3, a plant growth-promoting bacterium isolated in Queensland, AustraliaPetersen, Ian, Paungfoo-Lonhienne, Chanyarat, Marcellin, Esteban, Nielsen, Lars Keld and Gonzalez, Axayacatl (2021). Towards sustainable bioinoculants: a fermentation strategy for high cell density cultivation of Paraburkholderia sp. SOS3, a plant growth-promoting bacterium isolated in Queensland, Australia. Fermentation, 7 (2) 58, 1-17. doi: 10.3390/fermentation7020058 |
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2021 Journal Article Cyclic di-AMP oversight of counter-Ion osmolyte pools impacts intrinsic cefuroxime resistance in Lactococcus lactisPham, Huong Thi, Shi, Wen, Xiang, Yuwei, Foo, Su Yi, Plan, Manuel R., Courtin, Pascal, Chapot-Chartier, Marie-Pierre, Smid, Eddy J., Liang, Zhao-Xun, Marcellin, Esteban and Turner, Mark S. (2021). Cyclic di-AMP oversight of counter-Ion osmolyte pools impacts intrinsic cefuroxime resistance in Lactococcus lactis. mBio, 12 (2) e00324-21, 1-18. doi: 10.1128/mBio.00324-21 |
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2021 Journal Article multiTFA: a Python package for multi-variate thermodynamics-based flux analysisMahamkali, Vishnuvardhan, McCubbin, Tim, Beber, Moritz Emanuel, Noor, Elad, Marcellin, Esteban and Nielsen, Lars Keld (2021). multiTFA: a Python package for multi-variate thermodynamics-based flux analysis. Bioinformatics, 37 (18), 3064-3066. doi: 10.1093/bioinformatics/btab151 |
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2021 Journal Article Transcriptional control of Clostridium autoethanogenum using CRISPRiFackler, Nick, Heffernan, James, Juminaga, Alex, Doser, Damien, Nagaraju, Shilpa, Gonzalez-Garcia, R. Axayacatl, Simpson, Séan D., Marcellin, Esteban and Köpke, Michael (2021). Transcriptional control of Clostridium autoethanogenum using CRISPRi. Synthetic Biology, 6 (1) ysab008, 1-8. doi: 10.1093/synbio/ysab008 |
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2021 Journal Article Perfusion culture of Chinese Hamster Ovary cells for bioprocessing applicationsMacDonald, Michael A., Nöbel, Matthias, Roche Recinos, Dinora, Martínez, Verónica S., Schulz, Benjamin L., Howard, Christopher B., Baker, Kym, Shave, Evan, Lee, Yih Yean, Marcellin, Esteban, Mahler, Stephen, Nielsen, Lars Keld and Munro, Trent (2021). Perfusion culture of Chinese Hamster Ovary cells for bioprocessing applications. Critical Reviews in Biotechnology, 42 (7), 1-17. doi: 10.1080/07388551.2021.1998821 |
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2020 Journal Article Time-course transcriptomics reveals that amino acids catabolism plays a key role in toxinogenesis and morphology in Clostridium tetaniOrellana, Camila A., Zaragoza, Nicolas E., Licona-Cassani, Cuauhtemoc, Palfreyman, Robin W., Cowie, Nicholas, Moonen, Glenn, Moutafis, George, Power, John, Nielsen, Lars K. and Marcellin, Esteban (2020). Time-course transcriptomics reveals that amino acids catabolism plays a key role in toxinogenesis and morphology in Clostridium tetani. Journal of Industrial Microbiology and Biotechnology, 47 (12), 1059-1073. doi: 10.1007/s10295-020-02330-3 |
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2020 Journal Article Enhanced metal recovery by efficient agglomeration of precipitates in an up-flow fixed-bed bioreactorLiu, Yun, Vaughan, James, Southam, Gordon, Serrano, Antonio, Marcellin, Esteban, Nancucheo, Ivan and Villa-Gomez, Denys K. (2020). Enhanced metal recovery by efficient agglomeration of precipitates in an up-flow fixed-bed bioreactor. Chemical Engineering Journal, 416 127662, 127662. doi: 10.1016/j.cej.2020.127662 |
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2020 Journal Article Adaptive laboratory evolution of native methanol assimilation in Saccharomyces cerevisiaeEspinosa, Monica I., Gonzalez-Garcia, Ricardo A., Valgepea, Kaspar, Plan, Manuel R., Scott, Colin, Pretorius, Isak S., Marcellin, Esteban, Paulsen, Ian T. and Williams, Thomas C. (2020). Adaptive laboratory evolution of native methanol assimilation in Saccharomyces cerevisiae. Nature Communications, 11 (1) 5564, 5564. doi: 10.1038/s41467-020-19390-9 |
