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2026 Journal Article Precision diagnostics for MBLs: the true game changer in treating antimicrobial resistance – Authors' replyPaterson, David L, Aslan, Abdullah T and Harris, Patrick N A (2026). Precision diagnostics for MBLs: the true game changer in treating antimicrobial resistance – Authors' reply. The Lancet Infectious Diseases, 26 (3), e145-e145. doi: 10.1016/S1473-3099(26)00009-5 |
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2026 Journal Article Profiling of Burkholderia pseudomallei variants derived from Queensland’s clinical isolatesCoulon, Pauline M. L., Ramsay, Kay, Lee, Aven, Ritmejeryte, Edita, Pitt, Miranda E., To, Joyce, Mediati, Daniel G., Gassiep, Ian, Reed, Sarah, Harris, Patrick N. A. and Myers, Garry S. A. (2026). Profiling of Burkholderia pseudomallei variants derived from Queensland’s clinical isolates. Microbiology Spectrum, 14 (2) e02437-25, 1-19. doi: 10.1128/spectrum.02437-25 |
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2026 Journal Article Host Transcriptomics and Culture‐Independent Testing for the Management of Febrile Neutropenia: Data From an Observational Study Conducted in a Bone Marrow Transplant UnitPeri, Anna Maria, Henden, Andrea S., Nelles, Ricky, Chatfield, Mark D., Harris, Patrick N. A., Kennedy, Glen and Paterson, David L. (2026). Host Transcriptomics and Culture‐Independent Testing for the Management of Febrile Neutropenia: Data From an Observational Study Conducted in a Bone Marrow Transplant Unit. European Journal of Haematology ejh.70122. doi: 10.1111/ejh.70122 |
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2026 Journal Article Comparison of ceftazidime-avibactam with other appropriate antimicrobial therapy for the treatment of OXA-48- or KPC-producing Enterobacterales infections in Türkiye: A multi-centre retrospective matched-cohort studyAslan, Abdullah Tarık, Tanriverdi, Elif Seren, Kaya, Sibel Yıldız, Dalgan, Gozde, Saltoğlu, Neşe, Yılmaz, Ezgi, Çiçek, Yeliz, Yılmaz, Mesut, Erol, Çiğdem, Azap, Özlem Kurt, Hazırolan, Gülşen, Dağ, Osman, Yüce, Zeynep Türe, Sagiroglu, Pinar, Boztaş, Damla, Işık, Muhammed Cihan, Otlu, Bariş, Harris, Patrick N.A., Paterson, David L., Akova, Murat and on behalf of the Study Group for Carbapenem Resistance (SCARE) (2026). Comparison of ceftazidime-avibactam with other appropriate antimicrobial therapy for the treatment of OXA-48- or KPC-producing Enterobacterales infections in Türkiye: A multi-centre retrospective matched-cohort study. International Journal of Antimicrobial Agents, 67 (1) 107650, 1-9. doi: 10.1016/j.ijantimicag.2025.107650 |
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2025 Journal Article Co-isolation of genetically distinct Burkholderia pseudomallei strains from a single patient in North QueenslandCoulon, Pauline M. L., Chowdhury, Piklu Roy, Gassiep, Ian, Ramsay, Kay, Lee, Aven, Ritmejeryte, Edita, Pitt, Miranda E., To, Joyce, Reed, Sarah, Harris, Patrick N. A. and Myers, Garry S. A. (2025). Co-isolation of genetically distinct Burkholderia pseudomallei strains from a single patient in North Queensland. PLoS One, 20 (12) e0338333, 1-18. doi: 10.1371/journal.pone.0338333 |
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2025 Journal Article Rapid Diagnostic Strategies for Antibiotic-Resistant Bacteria Causing Bloodstream InfectionPeri, Anna Maria, Harris, Patrick N.A. and Banerjee, Ritu (2025). Rapid Diagnostic Strategies for Antibiotic-Resistant Bacteria Causing Bloodstream Infection. Infectious Disease Clinics of North America, 40 (1), 237-254. doi: 10.1016/j.idc.2025.11.008 |
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2025 Journal Article In reply to the Letter to Editor Regarding "Comparison of ceftazidime-avibactam with other appropriate antimicrobial therapy for the treatment of OXA-48- or KPC-producing Enterobacterales infections in Turkiye: A multi-centre retrospective matched-cohort study"Aslan, Abdullah T., Harris, Patrick N.A. and Paterson, David L. (2025). In reply to the Letter to Editor Regarding "Comparison of ceftazidime-avibactam with other appropriate antimicrobial therapy for the treatment of OXA-48- or KPC-producing Enterobacterales infections in Turkiye: A multi-centre retrospective matched-cohort study". International Journal of Antimicrobial Agents, 67 (2) 107691, 107691. doi: 10.1016/j.ijantimicag.2025.107691 |
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2025 Journal Article Metatranscriptomic identification of Trubanaman virus sequences in patient with encephalitis, AustraliaHajkowicz, Krispin, Woodford, John, Subramonia Pillai, Elango, Henden, Andrea, Lowry, Kym, Petrone, Mary E., Harris, Patrick N. A. and Holmes, Edward C. (2025). Metatranscriptomic identification of Trubanaman virus sequences in patient with encephalitis, Australia. Emerging Infectious Diseases, 31 (12) 2332, 1-4. doi: 10.3201/eid3112.251190 |
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2025 Journal Article Speciation of coagulase-negative staphylococci: A cohort study on clinical relevance and outcomesKeogh, Samantha, Larsen, Emily N., Edwards, Felicity, Totsika, Makrina, Marsh, Nicole, Harris, Patrick.N.A. and Laupland, Kevin B. (2025). Speciation of coagulase-negative staphylococci: A cohort study on clinical relevance and outcomes. Infection, Disease and Health, 30 (4), 307-315. doi: 10.1016/j.idh.2025.04.001 |
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2025 Journal Article Practical considerations for the Implementation of Syndromic Panels and Diagnostic stewardship in the era of syndromic panel testingSubedi, Shradha, Harris, N. A. Patrick, Hall, Lisa and Paterson, L. David (2025). Practical considerations for the Implementation of Syndromic Panels and Diagnostic stewardship in the era of syndromic panel testing. Clinical Microbiology and Infection, 31 (11), 1822-1827. doi: 10.1016/j.cmi.2025.06.013 |
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2025 Journal Article Cefiderocol versus standard therapy for hospital-acquired and health-care-associated Gram-negative bacterial bloodstream infection (the GAME CHANGER trial): an open-label, parallel-group, randomised trialPaterson, David L., Sulaiman, Helmi, Liu, Po-Yu, Chatfield, Mark D., Yilmaz, Mesut, Salmuna, Zeti Norfidiyati, Mazlan, Mohd Zulfakar, Anunnatsiri, Siriluck, Sirijatuphat, Rujipas, Chotiprasitsakul, Darunee, Lye, David C., Somani, Jyoti, Kalimuddin, Shirin, Aslan, Abdullah T., Thamlikitkul, Visanu, Lee, Yi-Tzu, Yang, Ya-Sung, Lin, Yi-Tsung, Ramli, Wan Nurliyana Wan, Tseng, Chien-Hao, Archuleta, Sophia, Chan, Yvonne Fu Zi, Forde, Brian M., Wright, Hugh, Stewart, Adam G., Ramsay, Kay A., Ling, Weiping, Rossi, Vicki, Harris-Brown, Tiffany M. and Harris, Patrick N. A. (2025). Cefiderocol versus standard therapy for hospital-acquired and health-care-associated Gram-negative bacterial bloodstream infection (the GAME CHANGER trial): an open-label, parallel-group, randomised trial. The Lancet Infectious Diseases, 26 (2), 148-159. doi: 10.1016/s1473-3099(25)00469-4 |
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2025 Journal Article Communicable diseases genomics network: promoting and harmonising pathogen genomics implementation for public health in AustraliaLin, Chantel, Jennison, Amy V., Leong, Lex E.X., Speers, David J., Meumann, Ella M., Cooley, Louise, Kennedy, Karina, Arnott, Alicia, Winter, David, Rawlinson, William, Robson, Jennifer, Harris, Patrick, Donald, Angela, Seemann, Torsten, Ballard, Susan A., Kirk, Martyn, Sintchenko, Vitali, Williamson, Deborah A. and Howden, Benjamin P. (2025). Communicable diseases genomics network: promoting and harmonising pathogen genomics implementation for public health in Australia. The Lancet Regional Health - Western Pacific, 63 101692, 1-7. doi: 10.1016/j.lanwpc.2025.101692 |
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2025 Journal Article A global survey of diagnostic practices in prosthetic joint infectionsSubedi, Shradha, Harris, Patrick NA, Chapman, Paul, Chen, Antonia F, Davis, Joshua S, Liu, Po-Yu, Marais, Leonard C, Salles, Mauro J, Roberts, Jason A, Rodriguez-Bano, Jesus, Wouthuyzen-Bakker, Marjan, Paterson, David L and Benito, Natividad (2025). A global survey of diagnostic practices in prosthetic joint infections. Diagnostic Microbiology and Infectious Disease, 113 (2) 116919, 1-8. doi: 10.1016/j.diagmicrobio.2025.116919 |
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2025 Journal Article Snapshot genomic surveillance reveals insights into antimicrobial resistance and lineage diversity of uropathogens in older adults in QueenslandPermana, Budi, Falconer, Caitlin, Mayer-Coverdale, Johanna, Robson, Jennifer, Cuddihy, Thom, Schembri, Mark A., Paterson, David L., Harris, Patrick N. A. and Forde, Brian M. (2025). Snapshot genomic surveillance reveals insights into antimicrobial resistance and lineage diversity of uropathogens in older adults in Queensland. Open Forum Infectious Diseases, 12 (10) ofaf610, 1-8. doi: 10.1093/ofid/ofaf610 |
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2025 Journal Article Evaluation of an automated molecular diagnostic instrument for direct detection of Burkholderia pseudomallei from clinical specimensGassiep, Ian, Glover, Matthew, Beecham, Mark, Gorman, Brian, Page, Melissa, Stewart, James and Harris, Patrick N. A. (2025). Evaluation of an automated molecular diagnostic instrument for direct detection of Burkholderia pseudomallei from clinical specimens. Journal of Medical Microbiology, 74 (9) 002074, 1-6. doi: 10.1099/jmm.0.002074 |
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2025 Journal Article Emergence of a carbapenem-resistant atypical uropathogenic Escherichia coli clone as an increasing cause of urinary tract infectionWalker, Lachlan L., Phan, Minh-Duy, Permana, Budi, Lian, Zheng Jie, Nhu, Nguyen Thi Khanh, Cuddihy, Thom, Peters, Kate M., Ramsay, Kay A., Stewart, Chelsea, Pfennigwerth, Niels, Kidd, Timothy J., Harris, Patrick N. A., Paterson, David L., Sweet, Matthew J., Forde, Brian M. and Schembri, Mark A. (2025). Emergence of a carbapenem-resistant atypical uropathogenic Escherichia coli clone as an increasing cause of urinary tract infection. Nature Communications, 16 (1) 8200, 1-10. doi: 10.1038/s41467-025-63477-0 |
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2025 Journal Article Antibiotic therapy for severe bacterial infectionsTimsit, Jean-Francois, Ling, Lowell, de Montmollin, Etienne, Bracht, Hendrik, Conway-Morris, Andrew, De Bus, Liesbet, Falcone, Marco, Harris, Patrick N. A., Machado, Flavia R., Paiva, Jose-Artur, Paterson, David L., Poulakou, Garyphallia, Roberts, Jason A., Roger, Claire, Shorr, Andrew F., Tabah, Alexis and Lipman, Jeffrey (2025). Antibiotic therapy for severe bacterial infections. Intensive Care Medicine, 51 (10), 1867-1885. doi: 10.1007/s00134-025-08063-0 |
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2025 Journal Article Effectiveness and safety of antibiotics in kidney transplant recipients with asymptomatic bacteriuria: a systematic review and meta-analysis of randomized controlled trialsAslan, Abdullah Tarik, Tanriverdi, Lokman Hekim, Hernandez, Adrian V, Akova, Umut, Kutluca, Kursat, Chan, Samuel, Coussement, Julien, Manuel, Arreola Guerra Jose, Origuen, Julia, Sabé, Núria, Harris, Patrick N A, Akova, Murat and Paterson, David L (2025). Effectiveness and safety of antibiotics in kidney transplant recipients with asymptomatic bacteriuria: a systematic review and meta-analysis of randomized controlled trials. Open Forum Infectious Diseases, 12 (9) ofaf502, ofaf502-9. doi: 10.1093/ofid/ofaf502 |
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2025 Journal Article Probe-capture targeted next-generation sequencing: A novel approach for pathogen and antimicrobial resistance detection in sepsisRavi, Chitra, Irwin, Adam D. and Harris, Patrick N. A. (2025). Probe-capture targeted next-generation sequencing: A novel approach for pathogen and antimicrobial resistance detection in sepsis. Clinical and Translational Discovery, 5 (4) e70079, 4. doi: 10.1002/ctd2.70079 |
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2025 Journal Article Population-based longitudinal study over two decades of Candida and Candida-like species bloodstream infection reveals gender and species differences in mortality, recurrence and resistanceStewart, Adam G., Laupland, Kevin B., Edwards, Felicity, Koo, Sophia, Hammond, Sarah P., Harris, Patrick N. A., Paterson, David L., Slavin, Monica A. and Chen, Sharon C-A (2025). Population-based longitudinal study over two decades of Candida and Candida-like species bloodstream infection reveals gender and species differences in mortality, recurrence and resistance. Journal of Infection, 91 (1) 106513, 1-11. doi: 10.1016/j.jinf.2025.106513 |
