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2026 Journal Article Reply to letter to editor “Clarifying exposure heterogeneity in a review of HERVs and neurodegenerative diseases”Geleta, Leta Adugna, Doyle, Caitlin, Garton, Fleur C., Fowler, Megan, Carr, Jillian M., Akkari, P.Anthony, McRae, Allan F., Rogers, Mary-Louise, Madakkatel, Iqbal and Benyamin, Beben (2026). Reply to letter to editor “Clarifying exposure heterogeneity in a review of HERVs and neurodegenerative diseases”. Brain, Behavior, and Immunity, 137 106834, 106834-106834. doi: 10.1016/j.bbi.2026.106834 |
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2026 Journal Article Epigenome-wide association study meta-analysis of wellbeingBartels, Meike, van de Weijer, Margot P., Azcona-Granada, Natalia, Baselmans, Bart M. L., Suderman, Matthew, Soerensen, Mette, Buchwald, Jadwiga, Mulder, Rosa H., Rawal, Rajesh, Luciano, Michelle, Bonder, Marc Jan, Choudhary, Priyanka, Lowry, Estelle, Lind, Penelope A., Schwartz, Joel, Debrabant, Birgit, Ollikainen, Miina, Felix, Janine F., Bakermans-Kranenburg, Marian J., Tiemeier, Henning, Gieger, Christian, Waldenberger, Melanie, Martin, Nicholas G., Vokonas, Pantel, Baccarelli, Andrea A., Christensen, Kaare, Kaprio, Jaakko, van IJzendoorn, Marinus H., Emeny, Rebecca T. ... van Dongen, Jenny (2026). Epigenome-wide association study meta-analysis of wellbeing. Clinical Epigenetics. doi: 10.1186/s13148-026-02202-0 |
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2026 Journal Article Strategic Amyotrophic Lateral Sclerosis Australia–Systems Genomics Consortium (SALSA-SGC): cohort profileHenders, Anjali K., Ziser, Laura, Garton, Fleur C., Adams, Lorel, Ernst, Karalyn, Furlong, Sarah, Heads, Judith Anne, Heggie, Susan, Krasniqi, Ruth, Bhadravathi Lokeshappa, Madhura, Mazumder, Srestha, McNamara, Elyshia, MacShane, Amanda, Mekhael, Linda, Nunn, Lorelle, Orden, Bronwen, Ryder, Julie, Thorpe, Kathryn, Toubia, Marie, Wallace, Leanne M., Wickremeratne, Dina, Windebank, Emma, Benyamin, Beben, Ngo, Shyuan, Nicholson, Garth, Pamphlett, Roger, Steyn, Frederik J., Visscher, Peter M., Willams, Kelly L. ... Wray, Naomi R. (2026). Strategic Amyotrophic Lateral Sclerosis Australia–Systems Genomics Consortium (SALSA-SGC): cohort profile. BMJ Open, 16 (6) e110906, 1-10. doi: 10.1136/bmjopen-2025-110906 |
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2026 Journal Article Extensive antagonistic variants across the human genomeBian, Beilei, Hivert, Valentin, Wray, Naomi R. and McRae, Allan F. (2026). Extensive antagonistic variants across the human genome. Nature Communications, 17 (1) 6122, 1-12. doi: 10.1038/s41467-026-71215-3 |
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2026 Journal Article Large-scale exome analyses reveal new rare variant contributions in amyotrophic lateral sclerosisHop, Paul J., Kooyman, Maarten, Kenna, Brendan J., Zwamborn, Ramona A. J., van Eijk, Kristel R., Wang, Yan, van Dijk, Charlotte H., Bekema, Erwin, van Rheenen, Wouter, Beele, Paul, van Vugt, Joke J. F. A., Al Khleifat, Ahmad, Iacoangeli, Alfredo, Cooper-Knock, Johnathan, Smith, Bradley N., Topp, Simon, van der Kooi, Anneke J., Fominykh, Vera, Drory, Vivian, Lerner, Yossef, Shovman, Yehuda, Rowe, Dominic B., Williams, Kelly L., McLaughlin, Russell L., Hurt, Jessica, Huang, Yunfeng, Chen, Chia-Yen, Tsai, Ellen, Runz, Heiko ... Veldink, Jan H. (2026). Large-scale exome analyses reveal new rare variant contributions in amyotrophic lateral sclerosis. Nature Genetics, 58 (4), 717-725. doi: 10.1038/s41588-026-02535-9 |
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2026 Journal Article Effects of testosterone on gene expression in males and females across 40 human tissuesCheruiyot, Evans Kiptoo, Zhihong, Zhu and Mcrae, Allan F. (2026). Effects of testosterone on gene expression in males and females across 40 human tissues. Scientific Reports, 16 (1) 10223, 1-11. doi: 10.1038/s41598-026-40863-2 |
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2026 Journal Article Blood-based DNA methylation captures variance in adult heightHatton, Alesha A., Hillary, Robert F., McCartney, Daniel L., Harris, Sarah E., Cox, Simon R., Evans, Kathryn L., Walker, Rosie M., Suderman, Matthew, Yousefi, Paul, McRae, Allan F. and Marioni, Riccardo E. (2026). Blood-based DNA methylation captures variance in adult height. Genome Biology, 27 (1) 37. doi: 10.1186/s13059-025-03918-7 |
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2025 Journal Article The roles of human endogenous retrovirus in neurodegenerative diseases: a systematic reviewGeleta, Leta Adugna, Doyle, Caitlin, Garton, Fleur C., Fowler, Megan, Carr, Jillian M., Akkari, P.Anthony, McRae, Allan F., Rogers, Mary-Louise, Madakkatel, Iqbal and Benyamin, Beben (2025). The roles of human endogenous retrovirus in neurodegenerative diseases: a systematic review. Brain, Behavior, and Immunity, 132 106201. doi: 10.1016/j.bbi.2025.106201 |
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2025 Conference Publication Methylation risk score modelling indicates potential non-genetic DNA methylation effects associated with endometriosisThong, Li Ying, McRae, Allan, Sirota, Marina, Giudice, Linda, Montgomery, Grant and Mortlock, Sally (2025). Methylation risk score modelling indicates potential non-genetic DNA methylation effects associated with endometriosis. 58th Conference of the European-Society-of-Human-Genetics (ESHG), Milan Italy, May 24-27, 2025. LONDON: SPRINGERNATURE. |
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2025 Conference Publication Deconvolution of bulk endometrial tissue identifies cell type specific gene regulation associated with endometriosisHota, Monalisa, McKinnon, Brett, Montgomery, Grant, McRae, Allan and Mortlock, Sally (2025). Deconvolution of bulk endometrial tissue identifies cell type specific gene regulation associated with endometriosis. 58th Conference of the European Society of Human Genetics (ESHG), Milan, Italy, 24 - 27 May 2025. London, United Kingdom: Nature Publishing Group. |
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2025 Conference Publication Investigating epigenetic changes in body mass index trajectories across childhoodKym-Mai Nguyen, , Flatley, Christopher, Hatton, Alesha, Thong, Li Ying, Evans, David, Warrington, Nicole, McRae, Allan and Gratten, Jacob (2025). Investigating epigenetic changes in body mass index trajectories across childhood. 58th Conference of the European-Society-of-Human-Genetics (ESHG), Milan Italy, May 24-27, 2025. LONDON: SPRINGERNATURE. |
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2025 Journal Article Epigenetic profiles of tissue informative CpGs inform ALS disease status and progressionCaggiano, Christa, Morselli, Marco, Qian, Xiaoyu, Celona, Barbara, Thompson, Michael J., Wani, Shivangi, Tosevska, Anela, Taraszka, Kodi, Heuer, Galen, Ngo, Shyuan T., Steyn, Frederick J., Nestor, Peter J., Wallace, Leanne, Mccombe, Pamela, Heggie, Susan, Thorpe, Kathryn, Mcelligott, Caitlin, English, Gemyka, Henders, Anjali, Henderson, Robert, Lomen-Hoerth, Catherine, Wray, Naomi R., Mcrae, Allan F., Pellegrini, Matteo, Garton, Fleur C. and Zaitlen, Noah (2025). Epigenetic profiles of tissue informative CpGs inform ALS disease status and progression. Genome Medicine, 17 (1) 115, 1-20. doi: 10.1186/s13073-025-01542-5 |
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2025 Journal Article Trans-eQTL mapping prioritises USP18 as a negative regulator of interferon response at a lupus risk locusFreimann, Krista, Brümmer, Anneke, Warmerdam, Robert, Rupall, Tarran S., Hernández-Ledesma, Ana Laura, Chiou, Joshua, Holzinger, Emily R., Maranville, Joseph C., Nakic, Nikolina, Ongen, Halit, Stefanucci, Luca, Turchin, Michael C., Barturen, Guillermo, Alarcón-Riquelme, Marta E., Viñuela, Ana, Dupuis, Théo, Brown, Andrew, Zhernakova, Dasha, Xie, Manke, Wood, Andrew R., Westra, Harm-Jan, Wen, Jia, Weiss, Stefan, Wang, Qingbo S., Völker, Uwe, Visscher, Peter M., Verlouw, Joost, Veldink, Jan, Tönjes, Anke ... Alasoo, Kaur (2025). Trans-eQTL mapping prioritises USP18 as a negative regulator of interferon response at a lupus risk locus. Nature Communications, 16 (1) 8795. doi: 10.1038/s41467-025-63856-7 |
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2025 Journal Article Penetrance of neurodevelopmental copy number variants is associated with variations in cortical morphologySilva, Ana I., Sønderby, Ida E., Kirov, George, Abdellaoui, Abdel, Agartz, Ingrid, Ames, David, Armstrong, Nicola J., Artiges, Eric, Banaschewski, Tobias, Bassett, Anne S., Bearden, Carrie E., Blangero, John, Boen, Rune, Boomsma, Dorret I., Bülow, Robin, Butcher, Nancy J., Calhoun, Vince, Campbell, Linda E., Chow, Eva W.C., Ciufolini, Simone, Craig, Michael C., Crespo-Farroco, Benedicto, Cunningham, Adam C., Dalvie, Shareefa, Daly, Eileen, Dazzan, Paola, de Geus, Eco J.C., de Zubicaray, Greig I., Doherty, Joanne L. ... for the ENIGMA-CNV working group (2025). Penetrance of neurodevelopmental copy number variants is associated with variations in cortical morphology. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, 10 (10), 1093-1106. doi: 10.1016/j.bpsc.2025.05.010 |
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2025 Journal Article Regulation of RNA splicing in endometrial tissue and its association with endometriosisYang, Fei, Qi, Ting, McRae, Allan F., Rogers, Peter A.W., Montgomery, Grant W. and Mortlock, Sally (2025). Regulation of RNA splicing in endometrial tissue and its association with endometriosis. iScience, 28 (9) 113207, 113207. doi: 10.1016/j.isci.2025.113207 |
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2025 Journal Article White blood cell proportions are associated with response to psychosocial therapy in young people at ultra-high risk for psychosisBarker, Lauren F., McRae, Allan F., Yuen, Hok Pan, Henders, Anjali K., Wallace, Leanne M., Lin, Tian, Phassouliotis, Christina, Spark, Jessica, Kerr, Melissa, Byrne, Enda M., Amminger, G. Paul, Nelson, Barnaby, Wray, Naomi R. and McGorry, Patrick D. (2025). White blood cell proportions are associated with response to psychosocial therapy in young people at ultra-high risk for psychosis. Biological Psychiatry Global Open Science, 5 (5) 100546, 1-11. doi: 10.1016/j.bpsgos.2025.100546 |
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2025 Journal Article Methylation risk score modelling in endometriosis: evidence for fon-genetic DNA methylation effects in a case–control studyThong, Li Ying, McRae, Allan F., Sirota, Marina, Giudice, Linda, Montgomery, Grant W. and Mortlock, Sally (2025). Methylation risk score modelling in endometriosis: evidence for fon-genetic DNA methylation effects in a case–control study. International Journal of Molecular Sciences, 26 (8) 3760, 3760. doi: 10.3390/ijms26083760 |
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2025 Journal Article GWAS significance thresholds in large cohorts of European ancestryCheruiyot, Evans K., Yang, Tingyan and McRae, Allan F (2025). GWAS significance thresholds in large cohorts of European ancestry. Genetics, 230 (1) iyaf056. doi: 10.1093/genetics/iyaf056 |
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2025 Journal Article Ten years preceding a diagnosis of neurodegenerative disease in Europe and Australia: medication use, health conditions, and biomarkers associated with Alzheimer's disease, Parkinson's disease, and amyotrophic lateral sclerosisWei, Dang, Freydenzon, Anna, Guinebretiere, Octave, Zaidi, Karim, Yang, Fen, Ye, Weimin, Hammar, Niklas, Modig, Karin, Wray, Naomi R., Feychting, Maria, Hamieh, Nadine, Ventelou, Bruno, Lekens, Beranger, Gantzer, Laurene, Durrleman, Stanley, McRae, Allan, Couvy-Duchesne, Baptiste, Fang, Fang and Nedelec, Thomas (2025). Ten years preceding a diagnosis of neurodegenerative disease in Europe and Australia: medication use, health conditions, and biomarkers associated with Alzheimer's disease, Parkinson's disease, and amyotrophic lateral sclerosis. eBioMedicine, 113 105585, 1-13. doi: 10.1016/j.ebiom.2025.105585 |
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2025 Journal Article Genome-wide copy number variation association study in anorexia nervosaWalker, Alicia, Karlsson, Robert, Szatkiewicz, Jin P., Thornton, Laura M., Yilmaz, Zeynep, Leppä, Virpi M., Savva, Androula, Lin, Tian, Sidorenko, Julia, McRae, Allan, Kirov, George, Davies, Helena L., Fundín, Bengt T., Chawner, Samuel J. R. A., Song, Jie, Borg, Stina, Wen, Jia, Watson, Hunna J., Munn-Chernoff, Melissa A., Baker, Jessica H., Gordon, Scott, Berrettini, Wade H., Brandt, Harry, Crawford, Steven, Halmi, Katherine A., Kaplan, Allan S., Kaye, Walter H., Mitchell, James, Strober, Michael ... Wray, Naomi R. (2025). Genome-wide copy number variation association study in anorexia nervosa. Molecular Psychiatry, 30 (5) 867, 2009-2016. doi: 10.1038/s41380-024-02811-2 |
