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2025 Journal Article Isolation of an exopolysaccharide-producing Weissella confusa strain from lettuce and exploring its application as a texture modifying adjunct culture in a soy milk alternativeHuang, Wenkang, Yang, Shuyu, Wätjen, Anders Peter, Gumulya, Yosephine, Fernández-Pacheco, Pilar, Marcellin, Esteban, Prakash, Sangeeta, Bang-Berthelsen, Claus Heiner and Turner, Mark S. (2025). Isolation of an exopolysaccharide-producing Weissella confusa strain from lettuce and exploring its application as a texture modifying adjunct culture in a soy milk alternative. International Journal of Food Microbiology, 428 110992, 110992. doi: 10.1016/j.ijfoodmicro.2024.110992 |
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2024 Journal Article Ancestral sequence reconstruction reveals determinants of regioselectivity in C(sp3)-H oxyfunctionalization reactions by CYP505EsEbrecht, Ana C., Aschenbrenner, Jasmin C., Gumulya, Yosephine, Smit, Martha S. and Opperman, Diederik J. (2024). Ancestral sequence reconstruction reveals determinants of regioselectivity in C(sp3)-H oxyfunctionalization reactions by CYP505Es. ACS Catalysis, 15 (1), 595-600. doi: 10.1021/acscatal.4c06260 |
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2024 Journal Article Thermostable fatty acid hydroxylases from ancestral reconstruction of cytochrome P450 family 4 enzymesHarris, Kurt L., Zhang, Yichi, Yang, Jade, Zeigler, Maxwell B., Thomson, Raine E. S., Carrera-Pacheco, Saskya E., Russell, Drake, Okada, Shoko, Strohmaier, Silja J., Gumulya, Yosephine, Scott, Colin, Totah, Rheem A. and Gillam, Elizabeth M. J. (2024). Thermostable fatty acid hydroxylases from ancestral reconstruction of cytochrome P450 family 4 enzymes. Catalysis Science & Technology, 14 (15), 4211-4227. doi: 10.1039/d4cy00090k |
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2024 Journal Article Engineering Biocatalysts for the C−H Activation of Fatty Acids by Ancestral Sequence Reconstruction**Jones, Bethan S., Ross, Connie M., Foley, Gabriel, Pozhydaieva, Nadiia, Sharratt, Joseph W., Kress, Nico, Seibt, Lisa S., Thomson, Raine E. S., Gumulya, Yosephine, Hayes, Martin A., Gillam, Elizabeth M. J. and Flitsch, Sabine L. (2024). Engineering Biocatalysts for the C−H Activation of Fatty Acids by Ancestral Sequence Reconstruction**. Angewandte Chemie, 136 (18). doi: 10.1002/ange.202314869 |
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2024 Journal Article Simulating compatible solute biosynthesis using a metabolic flux model of the biomining acidophile, Acidithiobacillus ferrooxidans ATCC 23270Khaleque, Himel Nahreen, Nazem-Bokaee, Hadi, Gumulya, Yosephine, Carlson, Ross P. and Kaksonen, Anna H. (2024). Simulating compatible solute biosynthesis using a metabolic flux model of the biomining acidophile, Acidithiobacillus ferrooxidans ATCC 23270. Research in Microbiology, 175 (1-2) 104115, 1-9. doi: 10.1016/j.resmic.2023.104115 |
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2024 Journal Article Engineering Biocatalysts for the C‐H Activation of Fatty Acids by Ancestral Sequence ReconstructionJones, Bethan S., Ross, Connie M., Foley, Gabriel, Pozhydaieva, Nadiia, Sharratt, Joseph W., Kress, Nico, Seibt, Lisa S., Thomson, Raine E. S., Gumulya, Yosephine, Hayes, Martin A., Gillam, Elizabeth M. J. and Flitsch, Sabine (2024). Engineering Biocatalysts for the C‐H Activation of Fatty Acids by Ancestral Sequence Reconstruction. Angewandte Chemie International Edition, 63 (18) e202314869, 1-10. doi: 10.1002/anie.202314869 |
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2023 Journal Article Toward sustainable space exploration: a roadmap for harnessing the power of microorganismsSantomartino, Rosa, Averesch, Nils J. H., Bhuiyan, Marufa, Cockell, Charles S., Colangelo, Jesse, Gumulya, Yosephine, Lehner, Benjamin, Lopez-Ayala, Ivanna, McMahon, Sean, Mohanty, Anurup, Santa Maria, Sergio R., Urbaniak, Camilla, Volger, Rik, Yang, Jiseon and Zea, Luis (2023). Toward sustainable space exploration: a roadmap for harnessing the power of microorganisms. Nature Communications, 14 (1) 1391, 1-11. doi: 10.1038/s41467-023-37070-2 |
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2022 Journal Article Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP)Foley, Gabriel, Mora, Ariane, Ross, Connie M., Bottoms, Scott, Sützl, Leander, Lamprecht, Marnie L., Zaugg, Julian, Essebier, Alexandra, Balderson, Brad, Newell, Rhys, Thomson, Raine E. S., Kobe, Bostjan, Barnard, Ross T., Guddat, Luke, Schenk, Gerhard, Carsten, Jörg, Gumulya, Yosephine, Rost, Burkhard, Haltrich, Dietmar, Sieber, Volker, Gillam, Elizabeth M. J. and Bodén, Mikael (2022). Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP). PL o S Computational Biology, 18 (10) e1010633, e1010633. doi: 10.1371/journal.pcbi.1010633 |
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2022 Journal Article Ancestral sequence reconstruction of the CYP711 family reveals functional divergence in strigolactone biosynthetic enzymes associated with gene duplication events in monocot grassesVinde, Marcos H., Cao, Da, Chesterfield, Rebecca J., Yoneyama, Kaori, Gumulya, Yosephine, Thomson, Raine E. S., Matila, Tebogo, Ebert, Birgitta E., Beveridge, Christine A., Vickers, Claudia E. and Gillam, Elizabeth M. J. (2022). Ancestral sequence reconstruction of the CYP711 family reveals functional divergence in strigolactone biosynthetic enzymes associated with gene duplication events in monocot grasses. New Phytologist, 235 (5), 1900-1912. doi: 10.1111/nph.18285 |
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2022 Journal Article Ancestral sequence reconstruction of a cytochrome P450 family involved in chemical defense reveals the functional evolution of a promiscuous, xenobiotic-metabolizing enzyme in vertebratesHarris, Kurt L., Thomson, Raine E.S., Gumulya, Yosephine, Foley, Gabriel, Carrera-Pacheco, Saskya E., Syed, Parnayan, Janosik, Tomasz, Sandinge, Ann-Sofie, Andersson, Shalini, Jurva, Ulrik, Bodén, Mikael and Gillam, Elizabeth M.J. (2022). Ancestral sequence reconstruction of a cytochrome P450 family involved in chemical defense reveals the functional evolution of a promiscuous, xenobiotic-metabolizing enzyme in vertebrates. Molecular Biology and Evolution, 39 (6) msac116. doi: 10.1093/molbev/msac116 |
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2022 Journal Article Applications and Potentials of Intelligent Swarms for magnetospheric studiesRajan, Raj Thilak, Ben-Maor, Shoshana, Kaderali, Shaziana, Turner, Calum, Milhim, Mohammed, Melograna, Catrina, Haken, Dawn, Paul, Gary, Vedant,, Sreekumar, V., Weppler, Johannes, Gumulya, Yosephine, Bunt, Riccardo, Bulgarini, Asia, Marnat, Maurice, Bussov, Kadri, Pringle, Frederick, Ma, Jusha, Amrutkar, Rushanka, Coto, Miguel, He, Jiang, Shi, Zijian, Hayder, Shahd, Jaber, Dina Saad Fayez, Zuo, Junchao, Alsukour, Mohammad, Renaud, Cécile, Christie, Matthew, Engad, Neta ... Cohen, Jacob (2022). Applications and Potentials of Intelligent Swarms for magnetospheric studies. Acta Astronautica, 193, 554-571. doi: 10.1016/j.actaastro.2021.07.046 |
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2022 Journal Article In situ resource utilisation: The potential for space biominingGumulya, Yosephine, Zea, Luis and Kaksonen, Anna H. (2022). In situ resource utilisation: The potential for space biomining. Minerals Engineering, 176 107288, 1-12. doi: 10.1016/j.mineng.2021.107288 |
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2021 Journal Article Potential of Acidithiobacillus ferrooxidans to grow on and bioleach metals from Mars and lunar regolith simulants under simulated microgravity conditionsKaksonen, Anna H., Deng, Xiao, Morris, Christina, Khaleque, Himel Nahreen, Zea, Luis and Gumulya, Yosephine (2021). Potential of Acidithiobacillus ferrooxidans to grow on and bioleach metals from Mars and lunar regolith simulants under simulated microgravity conditions. Microorganisms, 9 (12) 2416, 1-16. doi: 10.3390/microorganisms9122416 |
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2020 Journal Article Prospective directions for biohydrometallurgyKaksonen, Anna H., Deng, Xiao, Bohu, Tsing, Zea, Luis, Khaleque, Himel Nahreen, Gumulya, Yosephine, Boxall, Naomi J., Morris, Christina and Cheng, Ka Yu (2020). Prospective directions for biohydrometallurgy. Hydrometallurgy, 195 105376, 1-17. doi: 10.1016/j.hydromet.2020.105376 |
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2019 Journal Article Engineering thermostable CYP2D enzymes for biocatalysis using combinatorial libraries of ancestors for directed evolution (CLADE)Gumulya, Yosephine, Huang, Weiliang, D'Cunha, Stephlina A., Richards, Katelyn E., Thomson, Raine E.S., Hunter, Dominic J.B., Baek, Jong-Min, Harris, Kurt L., Boden, Mikael, De Voss, James J., Hayes, Martin A., Isin, Emre M., Andersson, Shalini, Jurva, Ulrik and Gillam, Elizabeth (2019). Engineering thermostable CYP2D enzymes for biocatalysis using combinatorial libraries of ancestors for directed evolution (CLADE). ChemCatChem, 11 (2) cctc.201801644, 841-850. doi: 10.1002/cctc.201801644 |
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2018 Journal Article Urban mining of lithium-ion batteries in Australia: Current state and future trendsBoxall, Naomi J., King, Sarah, Cheng, Ka Yu, Gumulya, Yosephine, Bruckard, Warren and Kaksonen, Anna H. (2018). Urban mining of lithium-ion batteries in Australia: Current state and future trends. Minerals Engineering, 128, 45-55. doi: 10.1016/j.mineng.2018.08.030 |
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2018 Journal Article Engineering highly functional thermostable proteins using ancestral sequence reconstructionGumulya, Yosephin, Baek, Jong-Min, Wun, Shun-Jie, Thomson, Raine E. S., Harris, Kurt L., Hunter, Dominic J. B., Behrendorff, James B. Y. H., Kulig, Justyna, Zheng, Shan, Wu, Xueming, Wu, Bin, Stok, Jeanette E., De Voss, James J., Schenk, Gerhard, Jurva, Ulrik, Andersson, Shalini, Isin, Emre M., Bodén, Mikael, Guddat, Luke and Gillam, Elizabeth M. J. (2018). Engineering highly functional thermostable proteins using ancestral sequence reconstruction. Nature Catalysis, 1 (11), 878-888. doi: 10.1038/s41929-018-0159-5 |
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2018 Journal Article Recent progress in biohydrometallurgy and microbial characterisationKaksonen, Anna H., Boxall, Naomi J., Gumulya, Yosephine, Khaleque, Himel N., Morris, Christina, Bohu, Tsing, Cheng, Ka Yu, Usher, Kayley M. and Lakaniemi, Aino-Maija (2018). Recent progress in biohydrometallurgy and microbial characterisation. Hydrometallurgy, 180, 7-25. doi: 10.1016/j.hydromet.2018.06.018 |
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2018 Journal Article In a quest for engineering acidophiles for biomining applications: Challenges and opportunitiesGumulya, Yosephine, Boxall, Naomi J., Khaleque, Himel N., Santala, Ville, Carlson, Ross P. and Kaksonen, Anna H. (2018). In a quest for engineering acidophiles for biomining applications: Challenges and opportunities. Genes, 9 (2) 116, 116-2. doi: 10.3390/genes9020116 |
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2018 Journal Article Effect of Binding on Enantioselectivity of Epoxide HydrolaseZaugg, Julian, Gumulya, Yosephine, Bodén, Mikael, Mark, Alan E and Malde, Alpeshkumar K (2018). Effect of Binding on Enantioselectivity of Epoxide Hydrolase. Journal of Chemical Information and Modeling, 58 (3), 630-640. doi: 10.1021/acs.jcim.7b00353 |
