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2008 Journal Article Metabolome-ionome-biomass interactions: What can we learn about salt stress by multiparallel phenotyping?Sanchez, Diego H., Redestig, Henning, Krämer, Ute, Udvardi, Michael K. and Kopka, Joachim (2008). Metabolome-ionome-biomass interactions: What can we learn about salt stress by multiparallel phenotyping?. Plant Signaling & Behavior, 3 (8), 598-600. doi: 10.4161/psb.3.8.6347 |
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2008 Journal Article Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed fillingVerdier, Jérôme, Kakar, Klementina, Gallardo, Karine, Le Signor, Christine, Aubert, Grégoire, Schlereth, Armin, Town, Christopher D., Udvardi, Michael K. and Thompson, Richard D. (2008). Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling. Plant Molecular Biology, 67 (6), 567-580. doi: 10.1007/s11103-008-9320-x |
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2008 Journal Article A gene expression atlas of the model legume Medicago truncatulaBenedito, Vagner A., Torres-Jerez, Ivone, Murray, Jeremy D., Andriankaja, Andry, Allen, Stacy, Kakar, Klementina, Wandrey, Maren, Verdier, Jérôme, Zuber, Hélène, Ott, Thomas, Moreau, Sandra, Niebel, Andreas, Frickey, Tancred, Weiller, Georg, He, Ji, Dai, Xinbin, Zhao, Patrick X., Tang, Yuhong and Udvardi, Michael K. (2008). A gene expression atlas of the model legume Medicago truncatula. The Plant journal : for cell and molecular biology, 55 (3), 504-513. doi: 10.1111/j.1365-313X.2008.03519.x |
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2008 Journal Article A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatulaKakar, Klementina, Wandrey, Maren, Czechowski, Tomasz, Gaertner, Tanja, Scheible, Wolf-Rüdiger, Stitt, Mark, Torres-Jerez, Ivone, Xiao, Yongli, Redman, Julia C., Wu, Hank C., Cheung, Foo, Town, Christopher D. and Udvardi, Michael K. (2008). A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula. Plant Methods, 4 (1) 18, 1-12. doi: 10.1186/1746-4811-4-18 |
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2008 Journal Article Eleven golden rules of quantitative RT-PCRUdvardi, Michael K., Czechowski, Tomasz and Scheible, Wolf-Rüdiger (2008). Eleven golden rules of quantitative RT-PCR. The Plant Cell, 20 (7), 1736-1737. doi: 10.1105/tpc.108.061143 |
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2008 Journal Article Characterization of spermidine and spermine synthases in Lotus japonicus: induction and spatial organization of polyamine biosynthesis in nitrogen fixing nodulesEfrose, R. C., Flemetakis, E., Sfichi, L., Stedel, C., Kouri, E. D., Udvardi, M. K., Kotzabasis, K. and Katinakis, P. (2008). Characterization of spermidine and spermine synthases in Lotus japonicus: induction and spatial organization of polyamine biosynthesis in nitrogen fixing nodules. Planta, 228 (1), 37-49. doi: 10.1007/s00425-008-0717-1 |
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2008 Journal Article Systemic signaling of the plant nitrogen status triggers specific transcriptome responses depending on the nitrogen source in Medicago truncatula1[W]Ruffel, Sandrine, Freixes, Sandra, Balzergue, Sandrine, Tillard, Pascal, Jeudy, Christian, Martin-Magniette, Marie Laure, van der Merwe, Margaretha J, Kakar, Klementina, Gouzy, Jerôme, Fernie, Alisdair R, Udvardi, Michael, Salon, Christophe, Gojon, Alain and Lepetit, Marc (2008). Systemic signaling of the plant nitrogen status triggers specific transcriptome responses depending on the nitrogen source in Medicago truncatula1[W]. Plant Physiology, 146 (4), 2020-2035. doi: 10.1104/pp.107.115667 |
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2008 Journal Article Integrative functional genomics of salt acclimatization in the model legume Lotus japonicusSanchez, Diego H., Lippold, Felix, Redestig, Henning, Hannah, Matthew A., Erban, Alexander, Krämer, Ute, Kopka, Joachim and Udvardi, Michael K. (2008). Integrative functional genomics of salt acclimatization in the model legume Lotus japonicus. The Plant Journal, 53 (6), 973-987. doi: 10.1111/j.1365-313X.2007.03381.x |
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2008 Journal Article Plant metabolomics reveals conserved and divergent metabolic responses to salinitySanchez, Diego H., Siahpoosh, Mohammad R., Roessner, Ute, Udvardi, Michael and Kopka, Joachim (2008). Plant metabolomics reveals conserved and divergent metabolic responses to salinity. Physiologia Plantarum, 132 (2), 209-219. doi: 10.1111/j.1399-3054.2007.00993.x |
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2008 Journal Article AffyTrees: facilitating comparative analysis of Affymetrix plant microarray chipsFrickey, Tancred, Benedito, Vagner Augusto, Udvardi, Michael and Weiller, Georg (2008). AffyTrees: facilitating comparative analysis of Affymetrix plant microarray chips. Plant Physiology, 146 (2), 377-386. doi: 10.1104/pp.107.109603 |
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2008 Journal Article Defects in rhizobial cyclic glucan and lipopolysaccharide synthesis alter legume gene expression during nodule developmentD'Antuono, Alejandra L, Ott, Thomas, Krusell, Lene, Voroshilova, Vera, Ugalde, Rodolfo A, Udvardi, Michael and Lepek, Viviana C (2008). Defects in rhizobial cyclic glucan and lipopolysaccharide synthesis alter legume gene expression during nodule development. Molecular Plant - Microbe Interactions, 21 (1), 50-60. doi: 10.1094/MPMI-21-1-0050 |
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2007 Journal Article Metabolism of reactive oxygen species is attenuated in leghemoglobin-deficient nodules of Lotus japonicusGünther, Catrin, Schlereth, Armin, Udvardi, Michael and Ott, Thomas (2007). Metabolism of reactive oxygen species is attenuated in leghemoglobin-deficient nodules of Lotus japonicus. Molecular Plant - Microbe Interactions, 20 (12), 1596-1603. doi: 10.1094/MPMI-20-12-1596 |
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2007 Journal Article Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitorLibault, Marc, Wan, Jinrong, Czechowski, Tomasz, Udvardi, Michael and Stacey, Gary (2007). Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Molecular Plant-Microbe Interactions, 20 (8), 900-911. doi: 10.1094/MPMI-20-8-0900 |
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2007 Journal Article Phosphorus stress in common bean: Root transcript and metabolic responsesHernández, Georgina, Ramírez, Mario, Valdés-López, Oswaldo, Tesfaye, Mesfin, Graham, Michelle A., Czechowski, Tomasz, Schlereth, Armin, Wandrey, Maren, Erban, Alexander, Cheung, Foo, Wu, Hank C., Lara, Miguel, Town, Christopher D., Kopka, Joachim, Udvardi, Michael K. and Vance, Carroll P. (2007). Phosphorus stress in common bean: Root transcript and metabolic responses. Plant Physiology, 144 (2), 752-767. doi: 10.1104/pp.107.096958 |
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2007 Journal Article Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorusMorcuende, Rosa, Bari, Rajendra, Gibon, Yves, Zheng, Wenming, Pant, Bikram Datt, Bläsing, Oliver, Usadel, Björn, Czechowski, Tomasz, Udvardi, Michael K., Stitt, Mark and Scheible, Wolf-Rüdiger (2007). Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant, Cell & Environment, 30 (1), 85-112. doi: 10.1111/j.1365-3040.2006.01608.x |
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2007 Journal Article Legume transcription factors: Global regulators of plant development and response to the environmentUdvardi, Michael K., Kakar, Klementina, Wandrey, Maren, Montanari, Ombretta, Murray, Jeremy, Andriankaja, Andry, Zhang, Ji-Yi, Benedito, Vagner, Hofer, Julie M.I., Chueng, Foo and Town, Christopher D. (2007). Legume transcription factors: Global regulators of plant development and response to the environment. Plant Physiology, 144 (2), 538-549. doi: 10.1104/pp.107.098061 |
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2006 Journal Article Spatial and temporal organization of sucrose metabolism in Lotus japonicus nitrogen-fixing nodules suggests a role for the elusive alkaline/neutral invertaseFlemetakis, Emmanouil, Efrose, Rodica C., Ott, Thomas, Stedel, Catalina, Aivalakis, Georgios, Udvardi, Michael K. and Katinakis, Panagiotis (2006). Spatial and temporal organization of sucrose metabolism in Lotus japonicus nitrogen-fixing nodules suggests a role for the elusive alkaline/neutral invertase. Plant Molecular Biology, 62 (1-2), 53-69. doi: 10.1007/s11103-006-9003-4 |
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2006 Journal Article Mechanisms of ammonium transport, accumulation, and retention in ooyctes and yeast cells expressing Arabidopsis AtAMT1;1Wood, Craig C, Porée, Fabien, Dreyer, Ingo, Koehler, Gabriele J and Udvardi, Michael K (2006). Mechanisms of ammonium transport, accumulation, and retention in ooyctes and yeast cells expressing Arabidopsis AtAMT1;1. FEBS Letters, 580 (16), 3931-6. doi: 10.1016/j.febslet.2006.06.026 |
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2006 Journal Article Genetic and genomic analysis of legume flowers and seedsDomoney, Claire, Duc, Gérard, Ellis, T H Noel, Ferrándiz, Cristina, Firnhaber, Christian, Gallardo, Karine, Hofer, Julie, Kopka, Joachim, Küster, Helge, Madueño, Franciso, Munier-Jolain, Nathalie G, Mayer, Klaus, Thompson, Richard, Udvardi, Michael and Salon, Christophe (2006). Genetic and genomic analysis of legume flowers and seeds. Current opinion in plant biology, 9 (2), 133-141. doi: 10.1016/j.pbi.2006.01.014 |
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2006 Journal Article Functional genomics of plant transporters in legume nodulesBenedito, Vagner A., Dai, Xinbin, He, Ji, Zhao, Patrick X. and Udvardi, Michael K. (2006). Functional genomics of plant transporters in legume nodules. Functional Plant Biology, 33 (8), 731-736. doi: 10.1071/fp06085 |
