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2023 Journal Article Captivity induces a sweeping and sustained genomic response in a starfishMorin, Marie, Jönsson, Mathias, Wang, Conan K., Craik, David J., Degnan, Sandie M. and Degnan, Bernard M. (2023). Captivity induces a sweeping and sustained genomic response in a starfish. Molecular Ecology, 32 (13), 3541-3556. doi: 10.1111/mec.16947 |
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2023 Journal Article HIV promotes atherosclerosis via circulating extracellular vesicle microRNAsDa Fonseca Ferreira, Andrea, Wei, Jianqin, Zhang, Lukun, Macon, Conrad J., Degnan, Bernard, Jayaweera, Dushyantha, Hare, Joshua M., Kolber, Michael A., Bellio, Michael, Khan, Aisha, Pan, Yue, Dykxhoorn, Derek M., Wang, Liyong and Dong, Chunming (2023). HIV promotes atherosclerosis via circulating extracellular vesicle microRNAs. International Journal of Molecular Sciences, 24 (8) 7567, 1-24. doi: 10.3390/ijms24087567 |
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2023 Journal Article How larvae and life cycles evolveDegnan, Bernard M. and Degnan, Sandie M. (2023). How larvae and life cycles evolve. Trends in Genetics, 39 (7), 528-530. doi: 10.1016/j.tig.2023.03.008 |
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2022 Journal Article Sex-specific expression of pheromones and other signals in gravid starfishJönsson, Mathias, Morin, Marie, Wang, Conan K., Craik, David J., Degnan, Sandie M. and Degnan, Bernard M. (2022). Sex-specific expression of pheromones and other signals in gravid starfish. BMC Biology, 20 (1) 288, 1-18. doi: 10.1186/s12915-022-01491-0 |
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2022 Journal Article Gene activation of metazoan Fox transcription factors at the onset of metamorphosis in the marine demosponge Amphimedon queenslandicaYuan, Huifang, Hatleberg, William L., Degnan, Bernard M. and Degnan, Sandie M. (2022). Gene activation of metazoan Fox transcription factors at the onset of metamorphosis in the marine demosponge Amphimedon queenslandica. Development, Growth and Differentiation, 64 (8), 455-468. doi: 10.1111/dgd.12812 |
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2022 Journal Article Ribosomal RNA-depletion provides an efficient method for successful dual RNA-Seq expression profiling of a marine sponge holobiontXiang, Xueyan, Poli, Davide, Degnan, Bernard M. and Degnan, Sandie M. (2022). Ribosomal RNA-depletion provides an efficient method for successful dual RNA-Seq expression profiling of a marine sponge holobiont. Marine Biotechnology, 24 (4), 722-732. doi: 10.1007/s10126-022-10138-8 |
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2022 Journal Article Phototransduction in a marine sponge provides insights into the origin of animal visionWong, Eunice, Anggono, Victor, Williams, Stephen R., Degnan, Sandie M. and Degnan, Bernard M. (2022). Phototransduction in a marine sponge provides insights into the origin of animal vision. iScience, 25 (6) 104436, 104436. doi: 10.1016/j.isci.2022.104436 |
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2022 Journal Article Distal regulation, silencers, and a shared combinatorial syntax are hallmarks of animal embryogenesisCornejo-Paramo, Paola, Roper, Kathrein, Degnan, Sandie, Degnan, Bernard and Wong, Emily S (2022). Distal regulation, silencers, and a shared combinatorial syntax are hallmarks of animal embryogenesis. Genome Research, 32 (3), 474-487. doi: 10.1101/gr.275864.121 |
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2021 Journal Article Pearl sac gene expression profiles associated with pearl attributes in the silver-lip pearl oyster, Pinctada maximaMcDougall, Carmel, Aguilera, Felipe, Shokoohmand, Ali, Moase, Patrick and Degnan, Bernard M. (2021). Pearl sac gene expression profiles associated with pearl attributes in the silver-lip pearl oyster, Pinctada maxima. Frontiers in Genetics, 11 597459, 1-13. doi: 10.3389/fgene.2020.597459 |
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2021 Journal Article The iron-responsive genome of the chiton Acanthopleura granulataVarney, Rebecca M., Speiser, Daniel I., McDougall, Carmel, Degnan, Bernard M. and Kocot, Kevin M. (2021). The iron-responsive genome of the chiton Acanthopleura granulata. Genome Biology and Evolution, 13 (1) evaa263, 1-15. doi: 10.1093/gbe/evaa263 |
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2020 Book Chapter Staining and Tracking Methods for Studying Sponge Cell DynamicsBorchiellini, Carole, Degnan, Sandie M., Le Goff, Emilie, Rocher, Caroline, Vernale, Amélie, Baghdiguian, Stephen, Séjourné, Nina, Marschal, Florent, Le Bivic, André, Godefroy, Nelly, Degnan, Bernard M. and Renard, Emmanuelle (2020). Staining and Tracking Methods for Studying Sponge Cell Dynamics. Developmental Biology of the Sea Urchin and Other Marine Invertebrates . (pp. 81-97) edited by David J. Carroll and Stephen A. Stricker. New York, NY, United States: Humana Press. doi: 10.1007/978-1-0716-0974-3_5 |
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2019 Journal Article Co-expression of synaptic genes in the sponge Amphimedon queenslandica uncovers ancient neural submodulesWong, Eunice, Mölter, Jan, Anggono, Victor, Degnan, Sandie M. and Degnan, Bernard M. (2019). Co-expression of synaptic genes in the sponge Amphimedon queenslandica uncovers ancient neural submodules. Scientific Reports, 9 (1) 15781, 15781. doi: 10.1038/s41598-019-51282-x |
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2019 Journal Article Author correction: The mid-developmental transition and the evolution of animal body plans (Nature, (2016), 531, 7596, (637-641), 10.1038/nature16994)Levin, Michal, Anavy, Leon, Cole, Alison G., Winter, Eitan, Mostov, Natalia, Khair, Sally, Senderovich, Naftalie, Kovalev, Ekaterina, Silver, David H., Feder, Martin, Fernandez-Valverde, Selene L., Nakanishi, Nagayasu, Simmons, David, Simakov, Oleg, Larsson, Tomas, Liu, Shang-Yun, Jerafi-Vider, Ayelet, Yaniv, Karina, Ryan, Joseph F., Martindale, Mark Q., Rink, Jochen C., Arendt, Detlev, Degnan, Sandie M., Degnan, Bernard M., Hashimshony, Tamar and Yanai, Itai (2019). Author correction: The mid-developmental transition and the evolution of animal body plans (Nature, (2016), 531, 7596, (637-641), 10.1038/nature16994). Nature, 575 (7782), E3-E3. doi: 10.1038/s41586-019-1698-x |
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2019 Journal Article The first identification of complete Eph-ephrin signalling in ctenophores and sponges reveals a role for neofunctionalization in the emergence of signalling domainsKrishnan, Arunkumar, Degnan, Bernard M. and Degnan, Sandie M. (2019). The first identification of complete Eph-ephrin signalling in ctenophores and sponges reveals a role for neofunctionalization in the emergence of signalling domains. BMC Evolutionary Biology, 19 (1) 96, 96. doi: 10.1186/s12862-019-1418-z |
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2018 Journal Article The evolution of ependymin-related proteinsMcDougall, Carmel, Hammond, Michael J., Dailey, Simon C., Somorjai, Ildiko M. L., Cummins, Scott F. and Degnan, Bernard M. (2018). The evolution of ependymin-related proteins. BMC Evolutionary Biology, 18 (1) 182, 182. doi: 10.1186/s12862-018-1306-y |
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2018 Journal Article Diverse RNA interference strategies in early-branching metazoansCalcino, Andrew D., Fernandez-Valverde, Selene L., Taft, Ryan J. and Degnan, Bernard M. (2018). Diverse RNA interference strategies in early-branching metazoans. BMC Evolutionary Biology, 18 (1) 160, 160. doi: 10.1186/s12862-018-1274-2 |
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2018 Journal Article The evolution of mollusc shellsMcDougall, Carmel and Degnan, Bernard M. (2018). The evolution of mollusc shells. Wiley Interdisciplinary Reviews: Developmental Biology, 7 (3) e313, e313. doi: 10.1002/wdev.313 |
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2018 Journal Article Long non-coding regulatory RNAs in sponges and insights into the origin of animal multicellularityGaiti, Federico, Degnan, Bernard M and Tanurdžić, Miloš (2018). Long non-coding regulatory RNAs in sponges and insights into the origin of animal multicellularity. RNA Biology, 15 (6), 1-22. doi: 10.1080/15476286.2018.1460166 |
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2018 Journal Article Sponge Long Non-Coding RNAs Are Expressed in Specific Cell Types and Conserved NetworksGaiti, Federico, Hatleberg, William L., Tanurdžić, Miloš and Degnan, Bernard M. (2018). Sponge Long Non-Coding RNAs Are Expressed in Specific Cell Types and Conserved Networks. Non-Coding RNA, 4 (1) 6, 6. doi: 10.3390/ncrna4010006 |
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2018 Conference Publication Early evolution of gene regulatory networks in metazoan developmentFernandez-Valverde, Selence L. and Degnan, Bernard M. (2018). Early evolution of gene regulatory networks in metazoan development. Annual Meeting of the Society for Integrative and Comparative Biology (SICB), San Francisco, CA, United States, 3-7 January 2018. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/icb/icy001 |
