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2020

Journal Article

Differential expression in leaves of Saccharum genotypes contrasting in biomass production provides evidence of genes involved in carbon partitioning

Correr, Fernando Henrique, Hosaka, Guilherme Kenichi, Barreto, Fernanda Zatti, Valadão, Isabella Barros, Balsalobre, Thiago Willian Almeida, Furtado, Agnelo, Henry, Robert James, Carneiro, Monalisa Sampaio and Margarido, Gabriel Rodrigues Alves (2020). Differential expression in leaves of Saccharum genotypes contrasting in biomass production provides evidence of genes involved in carbon partitioning. BMC Genomics, 21 (1) 673, 673. doi: 10.1186/s12864-020-07091-y

Differential expression in leaves of Saccharum genotypes contrasting in biomass production provides evidence of genes involved in carbon partitioning

2020

Journal Article

Wild sorghum as a promising resource for crop improvement

Ananda, Galaihalage K. S., Myrans, Harry, Norton, Sally L., Gleadow, Roslyn, Furtado, Agnelo and Henry, Robert J. (2020). Wild sorghum as a promising resource for crop improvement. Frontiers in Plant Science, 11 1108, 1108. doi: 10.3389/fpls.2020.01108

Wild sorghum as a promising resource for crop improvement

2020

Journal Article

Slower development of lower canopy beans produces better coffee

Cheng, Bing, Smyth, Heather E., Furtado, Agnelo and Henry, Robert J. (2020). Slower development of lower canopy beans produces better coffee. Journal of Experimental Botany, 71 (14), 4201-4214. doi: 10.1093/jxb/eraa151

Slower development of lower canopy beans produces better coffee

2020

Journal Article

Structural elements that modulate the substrate specificity of plant purple acid phosphatases: avenues for improved phosphorus acquisition in crops

Feder, Daniel, McGeary, Ross P., Mitić, Natasa, Lonhienne, Thierry, Furtado, Agnelo, Schulz, Benjamin L., Henry, Robert J., Schmidt, Susanne, Guddat, Luke W. and Schenk, Gerhard (2020). Structural elements that modulate the substrate specificity of plant purple acid phosphatases: avenues for improved phosphorus acquisition in crops. Plant Science, 294 110445, 110445. doi: 10.1016/j.plantsci.2020.110445

Structural elements that modulate the substrate specificity of plant purple acid phosphatases: avenues for improved phosphorus acquisition in crops

2020

Journal Article

Transcriptome profiling of wheat genotypes under heat stress during grain-filling

Rangan, Parimalan, Furtado, Agnelo and Henry, Robert (2020). Transcriptome profiling of wheat genotypes under heat stress during grain-filling. Journal of Cereal Science, 91 102895, 102895. doi: 10.1016/j.jcs.2019.102895

Transcriptome profiling of wheat genotypes under heat stress during grain-filling

2019

Journal Article

Relationships between Iraqi rice varieties at the nuclear and plastid genome levels

Badro, Hayba, Furtado, Agnelo and Henry, Robert (2019). Relationships between Iraqi rice varieties at the nuclear and plastid genome levels. Plants, 8 (11) 481, 481. doi: 10.3390/plants8110481

Relationships between Iraqi rice varieties at the nuclear and plastid genome levels

2019

Journal Article

Relationship between sugarcane culm and leaf biomass composition and saccharification efficiency

Hodgson-Kratky, K., Papa, G., Rodriguez, A., Stavila, V., Simmons, B., Botha, F., Furtado, A. and Henry, R. (2019). Relationship between sugarcane culm and leaf biomass composition and saccharification efficiency. Biotechnology for Biofuels, 12 (1) 247, 247. doi: 10.1186/s13068-019-1588-3

Relationship between sugarcane culm and leaf biomass composition and saccharification efficiency

2019

Journal Article

Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species

Guyeux, Christophe, Charr, Jean-Claude, Tran, Hue T. M., Furtado, Agnelo, Henry, Robert J., Crouzillat, Dominique, Guyot, Romain and Hamon, Perla (2019). Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species. PLoS One, 14 (6) e0216347, e0216347. doi: 10.1371/journal.pone.0216347

Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species

2019

Journal Article

Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

Thirugnanasambandam, Prathima P., Mason, Patrick J., Hoang, Nam V., Furtado, Agnelo, Botha, Frederik C. and Henry, Robert J. (2019). Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane. BMC Plant Biology, 19 (1) 160, 160. doi: 10.1186/s12870-019-1733-y

Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

2019

Journal Article

Analysis of the expression of transcription factors and other genes associated with aleurone layer development in wheat endosperm

Nirmal, Ravi C., Singh, Amit Kumar, Furtado, Agnelo and Henry, Robert J. (2019). Analysis of the expression of transcription factors and other genes associated with aleurone layer development in wheat endosperm. Journal of Cereal Science, 85, 62-69. doi: 10.1016/j.jcs.2018.11.010

Analysis of the expression of transcription factors and other genes associated with aleurone layer development in wheat endosperm

2019

Journal Article

The impact of cDNA normalization on long-read sequencing of a complex transcriptome

Hoang, Nam V., Furtado, Agnelo, Perlo, Virginie, Botha, Frederik C. and Henry, Robert (2019). The impact of cDNA normalization on long-read sequencing of a complex transcriptome. Frontiers in Genetics, 10 (JUN) 654, 654. doi: 10.3389/fgene.2019.00654

The impact of cDNA normalization on long-read sequencing of a complex transcriptome

2018

Journal Article

Differential response of wheat genotypes to heat stress during grain filling

Rangan, Parimalan, Furtado, Agnelo and Henry, Robert (2018). Differential response of wheat genotypes to heat stress during grain filling. Experimental Agriculture, 55 (5), 818-827. doi: 10.1017/s0014479718000406

Differential response of wheat genotypes to heat stress during grain filling

2018

Journal Article

Breeding for improved blanchability in peanut: phenotyping, genotype × environment interaction and selection

Wright, G. C., Borgognone, M. G., Connor, D. J.O., Rachaputi, R. C.N., Henry, R. J., Furtado, A., Anglin, N. L. and Freischfresser, D. B. (2018). Breeding for improved blanchability in peanut: phenotyping, genotype × environment interaction and selection. Crop & Pasture Science, 69 (12), 1237-1250. doi: 10.1071/CP18156

Breeding for improved blanchability in peanut: phenotyping, genotype × environment interaction and selection

2018

Journal Article

SNP in the Coffea arabica genome associated with coffee quality

Tran, Hue T. M., Furtado, Agnelo, Vargas, Carlos Alberto Cordero, Smyth, Heather, Lee, L. Slade and Henry, Robert (2018). SNP in the Coffea arabica genome associated with coffee quality. Tree Genetics & Genomes, 14 (5) 72. doi: 10.1007/s11295-018-1282-9

SNP in the Coffea arabica genome associated with coffee quality

2018

Journal Article

Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content

Kasirajan, Lakshmi, Hoang, Nam V., Furtado, Agnelo, Botha, Frederik C. and Henry, Robert J. (2018). Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content. Scientific Reports, 8 (1) 11612, 11612. doi: 10.1038/s41598-018-30033-4

Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content

2018

Journal Article

The coffee bean transcriptome explains the accumulation of the major bean components through ripening

Cheng, Bing, Furtado, Agnelo and Henry, Robert J. (2018). The coffee bean transcriptome explains the accumulation of the major bean components through ripening. Scientific Reports, 8 (1) 11414, 11414. doi: 10.1038/s41598-018-29842-4

The coffee bean transcriptome explains the accumulation of the major bean components through ripening

2018

Journal Article

Wheat seed transcriptome reveals genes controlling key traits for human preference and crop adaptation

Henry, Robert J., Furtado, Agnelo and Rangan, Parimalan (2018). Wheat seed transcriptome reveals genes controlling key traits for human preference and crop adaptation. Current Opinion in Plant Biology, 45 (Pt B), 231-236. doi: 10.1016/j.pbi.2018.05.002

Wheat seed transcriptome reveals genes controlling key traits for human preference and crop adaptation

2018

Journal Article

Chloroplast phylogeny of AA genome rice species

Mohammad Moner, Ali, Furtado, Agnelo and Henry, Robert J (2018). Chloroplast phylogeny of AA genome rice species. Molecular Phylogenetics and Evolution, 127, 475-487. doi: 10.1016/j.ympev.2018.05.002

Chloroplast phylogeny of AA genome rice species

2018

Journal Article

Diversity and evolution of rice progenitors in Australia

Moner, Ali M., Furtado, Agnelo, Chivers, Ian, Fox, Glen, Crayn, Darren and Henry, Robert J. (2018). Diversity and evolution of rice progenitors in Australia. Ecology and Evolution, 8 (8), 4360-4366. doi: 10.1002/ece3.3989

Diversity and evolution of rice progenitors in Australia

2018

Journal Article

De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts

Hoang, Nam V., Furtado, Agnelo, Thirugnanasambandam, Prathima P., Botha, Frederik C. and Henry, Robert J. (2018). De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts. Heliyon, 4 (3) e00583, e00583. doi: 10.1016/j.heliyon.2018.e00583

De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts