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2016 Journal Article MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencingWong, Nicholas C., Pope, Bernard J., Candiloro, Ida L., Korbie, Darren, Trau, Matt, Wong, Stephen Q., Mikeska, Thomas, Zhang, Xinmin Z, Pitman, Mark, Eggers, Stefanie, Doyle, Stephen R and Dobrovic, Alexander (2016). MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencing. BMC Bioinformatics, 17 (1) 98, 98.1-98.14. doi: 10.1186/s12859-016-0950-8 |
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2016 Journal Article Poly(A) extensions of miRNAs for amplification-free electrochemical detection on screen-printed gold electrodesKoo, Kevin M., Carrascosa, Laura G., Shiddiky, Muhammad J. A. and Trau, Matt (2016). Poly(A) extensions of miRNAs for amplification-free electrochemical detection on screen-printed gold electrodes. Analytical Chemistry, 88 (4), 2000-2005. doi: 10.1021/acs.analchem.5b04795 |
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2016 Journal Article Capture and on-chip analysis of melanoma cells using tunable surface shear forcesTsao, Simon Chang-Hao, Vaidyanathan, Ramanathan, Dey, Shuvashis, Carrascosa, Laura G., Christophi, Christopher, Cebon, Jonathan, Shiddiky, Muhammad J. A., Behren, Andreas and Trau, Matt (2016). Capture and on-chip analysis of melanoma cells using tunable surface shear forces. Scientific Reports, 6 (1) 19709, 19709.1-19709.10. doi: 10.1038/srep19709 |
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2016 Journal Article Accurate and sensitive total genomic DNA methylation analysis from sub-nanogram input with embedded SERS nanotagsWang, Yuling, Wee, Eugene J. H. and Trau, Matt (2016). Accurate and sensitive total genomic DNA methylation analysis from sub-nanogram input with embedded SERS nanotags. Chemical Communications, 52 (17), 3560-3563. doi: 10.1039/C6CC00547K |
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2016 Journal Article Toward precision medicine: a cancer molecular subtyping nano-trategy for RNA biomarkers in tumor and urineKoo, Kevin M., Wee, Eugene J. H., Mainwaring, Paul N., Wang, Yuling and Trau, Matt (2016). Toward precision medicine: a cancer molecular subtyping nano-trategy for RNA biomarkers in tumor and urine. Small, 12 (45), 6233-6242. doi: 10.1002/smll.201602161 |
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2015 Journal Article Naked-eye colorimetric and electrochemical detection of Mycobacterium tuberculosis—toward rapid screening for active case findingNg, Benjamin Y. C., Wee, Eugene J. H., West, Nicholas P. and Trau, Matt (2015). Naked-eye colorimetric and electrochemical detection of Mycobacterium tuberculosis—toward rapid screening for active case finding. ACS Sensors, 1 (2), 173-178. doi: 10.1021/acssensors.5b00171 |
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2015 Journal Article Exemplary multiplex bisulfite amplicon data used to demonstrate the utility of MethpatWong, Nicholas C., Pope, Bernard J., Candiloro, Ida, Korbie, Darren, Trau, Matt, Wong, Stephen Q., Mikeska, Thomas, van Denderen, Bryce J. W., Thompson, Erik W., Eggers, Stefanie, Doyle, Stephen R. and Dobrovic, Alexander (2015). Exemplary multiplex bisulfite amplicon data used to demonstrate the utility of Methpat. Gigascience, 4 (1) 55, 55.1-55.8. doi: 10.1186/s13742-015-0098-x |
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2015 Journal Article Enhancing protein capture using a combination of nanoyeast single-chain fragment affinity reagents and alternating current electrohydrodynamic forcesVaidyanathan, Ramanathan, Rauf, Sakandar, Grewal, Yadveer S., Spadafora, Lauren J., Shiddiky, Muhammad J. A., Cangelosi, Gerard A. and Trau, Matt (2015). Enhancing protein capture using a combination of nanoyeast single-chain fragment affinity reagents and alternating current electrohydrodynamic forces. Analytical Chemistry, 87 (23), 11673-11681. doi: 10.1021/acs.analchem.5b02490 |
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2015 Journal Article Alternating current electrohydrodynamics in microsystems: Pushing biomolecules and cells around on surfacesVaidyanathan, Ramanathan, Dey, Shuvashis, Carrascosa, Laura G., Shiddiky, Muhammad J.A. and Trau, Matt (2015). Alternating current electrohydrodynamics in microsystems: Pushing biomolecules and cells around on surfaces. Biomicrofluidics, 9 (061501) 061501, 061501. doi: 10.1063/1.4936300 |
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2015 Journal Article Rapid, Single-Cell Electrochemical Detection of Mycobacterium tuberculosis Using Colloidal Gold NanoparticlesNg, Benjamin Y. C., Xiao, Wei, West, Nicholas P., Wee, Eugene J. H., Wang, Yuling and Trau, Matt (2015). Rapid, Single-Cell Electrochemical Detection of Mycobacterium tuberculosis Using Colloidal Gold Nanoparticles. Analytical Chemistry, 87 (20), 10613-10618. doi: 10.1021/acs.analchem.5b03121 |
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2015 Journal Article Rapid DNA detection of Mycobacterium tuberculosis-towards single cell sensitivity in point-of-care diagnosisNg, Benjamin Y.C., Wee, Eugene J. H., West, Nicholas P. and Trau, Matt (2015). Rapid DNA detection of Mycobacterium tuberculosis-towards single cell sensitivity in point-of-care diagnosis. Scientific Reports, 5 (1) 15027, 15027.1-15027.7. doi: 10.1038/srep15027 |
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2015 Journal Article A simple bridging flocculation assay for rapid, sensitive and stringent detection of gene specific DNA methylationWee, Eugene J. H., Ngo, Thu Ha and Trau, Matt (2015). A simple bridging flocculation assay for rapid, sensitive and stringent detection of gene specific DNA methylation. Scientific Reports, 5 (Art No.: 15028) 15028, 15028. doi: 10.1038/srep15028 |
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2015 Journal Article DNA methylation of oestrogen-regulated enhancers defines endocrine sensitivity in breast cancerStone, Andrew, Zotenko, Elena, Locke, Warwick J., Korbie, Darren, Millar, Ewan K. A., Pidsley, Ruth, Stirzaker, Clare, Graham, Peter, Trau, Matt, Musgrove, Elizabeth A., Nicholson, Robert I., Gee, Julia M. W. and Clark, Susan J. (2015). DNA methylation of oestrogen-regulated enhancers defines endocrine sensitivity in breast cancer. Nature Communications, 6 (1) 7758, 7758.1-7758.9. doi: 10.1038/ncomms8758 |
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2015 Journal Article Colorimetric detection of both total genomic and loci-specific DNA methylation from limited DNA inputsWee, Eugene J. H., Ngo, Thu Ha and Trau, Matt (2015). Colorimetric detection of both total genomic and loci-specific DNA methylation from limited DNA inputs. Clinical Epigenetics, 7 (1) 65, 65. doi: 10.1186/s13148-015-0100-6 |
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2015 Journal Article DNA-bare gold affinity interactions: mechanism and applications in biosensingKoo, Kevin M., Sina, Abu A. I., Carrascosa, Laura G., Shiddiky, Muhammad J. A. and Trau, Matt (2015). DNA-bare gold affinity interactions: mechanism and applications in biosensing. Analytical Methods, 7 (17), 1-13. doi: 10.1039/c5ay01479d |
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2015 Journal Article Enabling rapid and specific surface enhanced raman scattering immunoassay using nano-scaled surface shear forcesWang, Yuling, Vaidyanathan, Ramanathan, Shiddiky, Muhammad J. A. and Trau, Matt (2015). Enabling rapid and specific surface enhanced raman scattering immunoassay using nano-scaled surface shear forces. ACS Nano, 9 (6), 6354-6362. doi: 10.1021/acsnano.5b01929 |
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2015 Journal Article Observations of tunable resistive pulse sensing for exosome analysis: improving system sensitivity and stabilityAnderson, Will, Lane, Rebecca, Korbie, Darren and Trau, Matt (2015). Observations of tunable resistive pulse sensing for exosome analysis: improving system sensitivity and stability. Langmuir, 31 (23), 6577-6587. doi: 10.1021/acs.langmuir.5b01402 |
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2015 Journal Article Structural characterization of nanoyeast single-chain fragment variable affinity reagentsGrewal, Yadveer S., Shiddiky, Muhammad J. A., Spadafora, Lauren J., Cangelosi, Gerard A. and Trau, Matt (2015). Structural characterization of nanoyeast single-chain fragment variable affinity reagents. The Journal of Physical Chemistry Part C: Nanomaterials, Interfaces and Hard Matter, 119 (22), 12674-12680. doi: 10.1021/acs.jpcc.5b01234 |
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2015 Journal Article A multiplexed device based on tunable nanoshearing for specific detection of multiple protein biomarkers in serumVaidyanathan, Ramanathan, van Leeuwen, Lara Michelle, Rauf, Sakandar, Shiddiky, Muhammad J. A. and Trau, Matt (2015). A multiplexed device based on tunable nanoshearing for specific detection of multiple protein biomarkers in serum. Scientific Reports, 5 (1) 9756, 9756.1-9756.7. doi: 10.1038/srep09756 |
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2015 Journal Article PARTICLE, a triplex-forming long ncRNA, regulates locus-specific methylation in response to low-dose irradiationO'Leary, Valerie Brid, Ovsepian, Saak Victor, Carrascosa, Laura Garcia, Buske, Fabian Andreas, Radulovic, Vanja, Niyazi, Maximilian, Moertl, Simone, Trau, Matt and Atkinson, Michael John (2015). PARTICLE, a triplex-forming long ncRNA, regulates locus-specific methylation in response to low-dose irradiation. Cell Reports, 11 (3), 474-485. doi: 10.1016/j.celrep.2015.03.043 |
