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2024 Journal Article Could prophylactic antivirals reduce dengue incidence in a high-prevalence endemic area?Jafari, Yalda, Brady, Oliver J., Briggs, Joseph R., Lien, Le Thuy, Mai, Huynh Kim, Nguyen, Hien Anh Thi, Van Loock, Marnix, Herrera-Taracena, Guillermo, Menten, Joris, Iwasaki, Chihiro, Takegata, Mizuki, Kitamura, Noriko, Do Thai, Hung, Minh, Bui Xuan, Morita, Kouichi, Anh, Dang Duc, Clifford, Sam, Prem, Kiesha, Hafalla, Julius, Edmunds, W. John, Yoshida, Lay Myint, Hibberd, Martin L. and Hue, Stephane (2024). Could prophylactic antivirals reduce dengue incidence in a high-prevalence endemic area?. PLoS Neglected Tropical Diseases, 18 (7) e0012334, e0012334. doi: 10.1371/journal.pntd.0012334 |
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2023 Journal Article Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission: a prospective cohort study in EnglandClifford, Samuel, Waight, Pauline, Hackman, Jada, Hué, Stephane, Gower, Charlotte M., Kirsebom, Freja C. M., Skarnes, Catriona, Letley, Louise, Lopez Bernal, Jamie, Andrews, Nick, Flasche, Stefan and Miller, Elizabeth (2023). Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission: a prospective cohort study in England. Wellcome Open Research, 8 96, 96. doi: 10.12688/wellcomeopenres.17995.2 |
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2023 Journal Article Optimal age targeting for pneumococcal vaccination in older adults; a modelling studyThindwa, Deus, Clifford, Samuel, Kleynhans, Jackie, von Gottberg, Anne, Walaza, Sibongile, Meiring, Susan, Swarthout, Todd D., Miller, Elizabeth, McIntyre, Peter, Andrews, Nick, Amin-Chowdhury, Zahin, Fry, Norman, Jambo, Kondwani C., French, Neil, Almeida, Samanta Cristine Grassi, Ladhani, Shamez N., Heyderman, Robert S., Cohen, Cheryl, de Cunto Brandileone, Maria Cristina and Flasche, Stefan (2023). Optimal age targeting for pneumococcal vaccination in older adults; a modelling study. Nature Communications, 14 (1) 888. doi: 10.1038/s41467-023-36624-8 |
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2022 Journal Article Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron eraBarnard, Rosanna C., Davies, Nicholas G., Munday, James D., Lowe, Rachel, Knight, Gwenan M., Leclerc, Quentin J., Tully, Damien C., Hodgson, David, Pung, Rachael, Hellewell, Joel, Koltai, Mihaly, Simons, David, Abbas, Kaja, Kucharski, Adam J., Procter, Simon R., Sandmann, Frank G., Pearson, Carl A. B., Prem, Kiesha, Showering, Alicia, Meakin, Sophie R., O’Reilly, Kathleen, McCarthy, Ciara V., Quaife, Matthew, Wong, Kerry L. M., Jafari, Yalda, Deol, Arminder K., Houben, Rein M. G. J., Diamond, Charlie, Jombart, Thibaut ... Edmunds, W. John (2022). Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era. Nature Communications, 13 (1) 4879. doi: 10.1038/s41467-022-32404-y |
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2022 Journal Article Correction: The local burden of disease during the first wave of the COVID-19 epidemic in England: estimation using different data sources from changing surveillance practices (BMC Public Health, (2022), 22, 1, (716), 10.1186/s12889-022-13069-0)Nightingale, Emily S., Abbott, Sam, Russell, Timothy W., Rees, Eleanor M., Eggo, Rosalind M., Quaife, Matthew, Sun, Fiona Yueqian, Pearson, Carl A. B., Prem, Kiesha, Munday, James D., Meakin, Sophie R., van Zandvoort, Kevin, Edmunds, W. John, Rosello, Alicia, Funk, Sebastian, O’Reilly, Kathleen, Quilty, Billy J., Procter, Simon R., Gimma, Amy, Kucharski, Adam J., Deol, Arminder K., Emery, Jon C., Bosse, Nikos I., Gibbs, Hamish P., Simons, David, Hué, Stéphane, Jarvis, Christopher I., Klepac, Petra, Liu, Yang ... Brady, Oliver J. (2022). Correction: The local burden of disease during the first wave of the COVID-19 epidemic in England: estimation using different data sources from changing surveillance practices (BMC Public Health, (2022), 22, 1, (716), 10.1186/s12889-022-13069-0). BMC Public Health, 22 (1) 1140. doi: 10.1186/s12889-022-13320-8 |
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2022 Journal Article Transmission dynamics of SARS-CoV-2 in a strictly-Orthodox Jewish community in the UKWaites, William, Pearson, Carl A. B., Gaskell, Katherine M., House, Thomas, Pellis, Lorenzo, Johnson, Marina, Gould, Victoria, Hunt, Adam, Stone, Neil R. H., Kasstan, Ben, Chantler, Tracey, Lal, Sham, Roberts, Chrissy H., Goldblatt, David, Abbas, Kaja, Abbott, Sam, Atkins, Katherine E., Barnard, Rosanna C., Bosse, Nikos I., Brady, Oliver, Chan, Yung-Wai Desmond, Chapman, Lloyd A. C., Clifford, Samuel, Davies, Nicholas G., Edmunds, W. John, Eggo, Rosalind M., Endo, Akira, Finch, Emilie, Flasche, Stefan ... Eggo, Rosalind M. (2022). Transmission dynamics of SARS-CoV-2 in a strictly-Orthodox Jewish community in the UK. Scientific Reports, 12 (1) 8550, 1. doi: 10.1038/s41598-022-12517-6 |
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2022 Journal Article Using high-resolution contact networks to evaluate SARS-CoV-2 transmission and control in large-scale multi-day eventsPung, Rachael, Firth, Josh A., Spurgin, Lewis G., Chang, Annie, Kong, Jade, Wong, Jazzy, Jin, Ooi Jo, Selvaraj, Deepa, Yong, Dominique, Lang, Jocelyn, Sivalingam, Abilash, Procter, Simon R., Flasche, Stefan, Waites, William, Prem, Kiesha, Pearson, Carl A. B., Gibbs, Hamish P., Sherratt, Katharine, Villabona-Arenas, C. Julian, Wong, Kerry L. M., Liu, Yang, Mee, Paul, Chapman, Lloyd A. C., Atkins, Katherine E., Quaife, Matthew, Munday, James D., Funk, Sebastian, Eggo, Rosalind M., Huè, Stèphane ... Kucharski, Adam J. (2022). Using high-resolution contact networks to evaluate SARS-CoV-2 transmission and control in large-scale multi-day events. Nature Communications , 13 (1) 1956, 1. doi: 10.1038/s41467-022-29522-y |
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2022 Journal Article Comparative assessment of methods for short-term forecasts of COVID-19 hospital admissions in England at the local levelMeakin, Sophie, Abbott, Sam, Bosse, Nikos, Munday, James, Gruson, Hugo, Hellewell, Joel, Sherratt, Katharine, Chapman, Lloyd A. C., Prem, Kiesha, Klepac, Petra, Jombart, Thibaut, Knight, Gwenan M., Jafari, Yalda, Flasche, Stefan, Waites, William, Jit, Mark, Eggo, Rosalind M., Villabona-Arenas, C. Julian, Russell, Timothy W., Medley, Graham, Edmunds, W. John, Davies, Nicholas G., Liu, Yang, Hué, Stéphane, Brady, Oliver, Pung, Rachael, Abbas, Kaja, Gimma, Amy, Mee, Paul ... Funk, Sebastian (2022). Comparative assessment of methods for short-term forecasts of COVID-19 hospital admissions in England at the local level. BMC Medicine, 20 (1) 86, 1. doi: 10.1186/s12916-022-02271-x |
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2022 Journal Article Ultrafine particle exposure and biomarkers of effect on small airways in childrenRobinson, Paul D., Salimi, Farhad, Cowie, Christine T., Clifford, Samuel, King, Gregory G., Thamrin, Cindy, Hardaker, Kate, Mazaheri, Mandana, Morawska, Lidia, Toelle, Brett G. and Marks, Guy B. (2022). Ultrafine particle exposure and biomarkers of effect on small airways in children. Environmental Research, 214 (Part 1) 113860, 113860. doi: 10.1016/j.envres.2022.113860 |
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2022 Journal Article Association of pneumococcal carriage in infants with the risk of carriage among their contacts in Nha Trang, Vietnam: A nested cross-sectional surveyQian, George, Toizumi, Michiko, Clifford, Sam, Le, Lien Thuy, Papastylianou, Tasos, Satzke, Catherine, Quilty, Billy, Iwasaki, Chihiro, Kitamura, Noriko, Takegata, Mizuki, Bui, Minh Xuan, Nguyen, Hien Anh Thi, Dang, Duc Anh, van Hoek, Albert Jan, Yoshida, Lay Myint and Flasche, Stefan (2022). Association of pneumococcal carriage in infants with the risk of carriage among their contacts in Nha Trang, Vietnam: A nested cross-sectional survey. PLOS Medicine, 19 (5) e1004016, e1004016-5. doi: 10.1371/journal.pmed.1004016 |
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2022 Journal Article Using trained dogs and organic semi-conducting sensors to identify asymptomatic and mild SARS-CoV-2 infections: an observational studyGuest, Claire, Dewhirst, Sarah Y., Lindsay, Steve W., Allen, David J., Aziz, Sophie, Baerenbold, Oliver, Bradley, John, Chabildas, Unnati, Chen-Hussey, Vanessa, Clifford, Samuel, Cottis, Luke, Dennehy, Jessica, Foley, Erin, Gezan, Salvador A., Gibson, Tim, Greaves, Courtenay K., Kleinschmidt, Immo, Lambert, Sébastien, Last, Anna, Morant, Steve, Parker, Josephine E. A., Pickett, John, Quilty, Billy J., Rooney, Ann, Shah, Manil, Somerville, Mark, Squires, Chelci, Walker, Martin, Logan, James G. ... Davis, Jane (2022). Using trained dogs and organic semi-conducting sensors to identify asymptomatic and mild SARS-CoV-2 infections: an observational study. Journal of Travel Medicine, 29 (3) taac043, 1-10. doi: 10.1093/jtm/taac043 |
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2022 Journal Article Changes in social contacts in England during the COVID-19 pandemic between March 2020 and March 2021 as measured by the CoMix survey: A repeated cross-sectional studyGimma, Amy, Munday, James D., Wong, Kerry L.M., Coletti, Pietro, van Zandvoort, Kevin, Prem, Kiesha, Klepac, Petra, Rubin, G. James, Funk, Sebastian, Edmunds, W. John, Jarvis, Christopher I., Chapman, Lloyd A.C., Clifford, Samuel, Jombart, Thibaut, O’Reilly, Kathleen, Lei, Jiayao, Abbas, Kaja, Krauer, Fabienne, Flasche, Stefan, Rosello, Alicia, Knight, Gwenan M., Tully, Damien C., Atkins, Katherine E., Pung, Rachael, Eggo, Rosalind M., Hodgson, David, Koltai, Mihaly, Jafari, Yalda, Russell, Timothy W. ... Nightingale, Emily S. (2022). Changes in social contacts in England during the COVID-19 pandemic between March 2020 and March 2021 as measured by the CoMix survey: A repeated cross-sectional study. PLoS Medicine, 19 (3) e1003907, e1003907-3. doi: 10.1371/journal.pmed.1003907 |
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2022 Journal Article SARS-CoV-2 antibodies protect against reinfection for at least 6 months in a multicentre seroepidemiological workplace cohortFinch, Emilie, Lowe, Rachel, Fischinger, Stephanie, de St Aubin, Michael, Siddiqui, Sameed M., Dayal, Diana, Loesche, Michael A., Rhee, Justin, Beger, Samuel, Hu, Yiyuan, Gluck, Matthew J., Mormann, Benjamin, Hasdianda, Mohammad A., Musk, Elon R., Alter, Galit, Menon, Anil S., Nilles, Eric J., Kucharski, Adam J., Lei, Jiayao, Funk, Sebastian, Sun, Fiona Yueqian, Gimma, Amy, Nightingale, Emily S., Medley, Graham, Abbott, Sam, Krauer, Fabienne, Davies, Nicholas G., Jit, Mark, Endo, Akira ... Sandmann, Frank G. (2022). SARS-CoV-2 antibodies protect against reinfection for at least 6 months in a multicentre seroepidemiological workplace cohort. PLoS Biology, 20 (2) e3001531, e3001531-2. doi: 10.1371/journal.pbio.3001531 |
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2021 Journal Article The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020Nightingale, Emily S., Brady, Oliver J., Yakob, Laith, Gimma, Amy, Jit, Mark, Jarvis, Christopher I., Waterlow, Naomi R., Procter, Simon R., Auzenbergs, Megan, Tully, Damien C., Simons, David, Endo, Akira, Hellewell, Joel, Lowe, Rachel, Foss, Anna M., van Zandvoort, Kevin, Pearson, Carl A.B., Showering, Alicia, Klepac, Petra, Medley, Graham, Quilty, Billy J., Diamond, Charlie, Edmunds, W. John, Rosello, Alicia, Barnard, Rosanna C., Abbas, Kaja, Sherratt, Katharine, Williams, Jack, Meakin, Sophie R. ... Munday, James D. (2021). The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020. Eurosurveillance, 26 (49) 2001809, 49. doi: 10.2807/1560-7917.ES.2021.26.49.2001809 |
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2021 Journal Article Estimating the effectiveness of routine asymptomatic PCR testing at different frequencies for the detection of SARS-CoV-2 infectionsHellewell, Joel, Russell, Timothy W., Matthews, Rebecca, Severn, Abigail, Adam, Sajida, Enfield, Louise, McBride, Angela, Gärtner, Kathleen, Edwards, Sarah, Lorencatto, Fabiana, Michie, Susan, Manley, Ed, Shahmanesh, Maryam, Lukha, Hinal, Prymas, Paulina, McBain, Hazel, Shortman, Robert, Wood, Leigh, Davies, Claudia, Williams, Bethany, Sanchez, Emilie, Frampton, Daniel, Byott, Matthew, Paraskevopoulou, Stavroula M., Crayton, Elise, Meyer, Carly, Vora, Nina, Gkouleli, Triantafylia, Stoltenberg, Andrea ... Kucharski, Adam J. (2021). Estimating the effectiveness of routine asymptomatic PCR testing at different frequencies for the detection of SARS-CoV-2 infections. BMC Medicine, 19 (1) 106. doi: 10.1186/s12916-021-01982-x |
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2021 Journal Article SARS-CoV-2 infection risk during delivery of childhood vaccination campaigns: a modelling studyProcter, Simon R., Abbas, Kaja, Flasche, Stefan, Griffiths, Ulla, Hagedorn, Brittany, O’Reilly, Kathleen M., Waterlow, Naomi R., Villabona-Arenas, C. Julian, Munday, James D., Medley, Graham F., Lowe, Rachel, Mee, Paul, Liu, Yang, Gimma, Amy, van Zandvoort, Kevin, Hellewell, Joel, Tully, Damien C., Brady, Oliver, Auzenbergs, Megan, Knight, Gwenan M., Kucharski, Adam J., Barnard, Rosanna C., Waites, William, Edmunds, W. John, Bosse, Nikos I., Endo, Akira, Finch, Emilie, Russell, Timothy W., Chan, Yung-Wai Desmond ... Jit, Mark (2021). SARS-CoV-2 infection risk during delivery of childhood vaccination campaigns: a modelling study. BMC Medicine, 19 (1) 198, 1. doi: 10.1186/s12916-021-02072-8 |
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2021 Journal Article Estimating the impact of reopening schools on the reproduction number of SARS-CoV-2 in England, using weekly contact survey dataMunday, James D., Jarvis, Christopher I., Gimma, Amy, Wong, Kerry L. M., van Zandvoort, Kevin, Liu, Yang, Hellewell, Joel, Davies, Nicholas G., Villabona-Arenas, C. Julian, Eggo, Rosalind M., Endo, Akira, Bosse, Nikos I., Gibbs, Hamish P., Pearson, Carl A. B., Sun, Fiona Yueqian, Jit, Mark, O’Reilly, Kathleen, Jafari, Yalda, Atkins, Katherine E., Waterlow, Naomi R., Rosello, Alicia, Chan, Yung-Wai Desmond, Foss, Anna M., Quilty, Billy J., Russell, Timothy W., Flasche, Stefan, Procter, Simon R., Waites, William, Barnard, Rosanna C. ... Edmunds, W. John (2021). Estimating the impact of reopening schools on the reproduction number of SARS-CoV-2 in England, using weekly contact survey data. BMC Medicine, 19 (1) 233, 1. doi: 10.1186/s12916-021-02107-0 |
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2021 Journal Article The impact of non-pharmaceutical interventions on SARS-CoV-2 transmission across 130 countries and territoriesLiu, Yang, Morgenstern, Christian, Kelly, James, Lowe, Rachel, Munday, James, Villabona-Arenas, C. Julian, Gibbs, Hamish, Pearson, Carl A. B., Prem, Kiesha, Leclerc, Quentin J., Meakin, Sophie R., Edmunds, W. John, Jarvis, Christopher I., Gimma, Amy, Funk, Sebastian, Quaife, Matthew, Russell, Timothy W., Emory, Jon C., Abbott, Sam, Hellewell, Joel, Tully, Damien C., Houben, Rein M. G. J., O’Reilly, Kathleen, Gore-Langton, Georgia R., Kucharski, Adam J., Auzenbergs, Megan, Quilty, Billy J., Jombart, Thibaut, Rosello, Alicia ... Jit, Mark (2021). The impact of non-pharmaceutical interventions on SARS-CoV-2 transmission across 130 countries and territories. BMC Medicine, 19 (1) 40, 1. doi: 10.1186/s12916-020-01872-8 |
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2021 Journal Article The impact of local and national restrictions in response to COVID-19 on social contacts in England: a longitudinal natural experimentJarvis, Christopher I., Gimma, Amy, van Zandvoort, Kevin, Wong, Kerry L. M., Abbas, Kaja, Villabona-Arenas, C. Julian, O’Reilly, Kathleen, Quaife, Matthew, Rosello, Alicia, Kucharski, Adam J., Gibbs, Hamish P., Atkins, Katherine E., Barnard, Rosanna C., Bosse, Nikos I., Procter, Simon R., Meakin, Sophie R., Sun, Fiona Yueqian, Abbott, Sam, Munday, James D., Russell, Timothy W., Flasche, Stefan, Sherratt, Katharine, Eggo, Rosalind M., Davies, Nicholas G., Quilty, Billy J., Auzenbergs, Megan, Hellewell, Joel, Jombart, Thibaut, Jafari, Yalda ... Edmunds, W. John (2021). The impact of local and national restrictions in response to COVID-19 on social contacts in England: a longitudinal natural experiment. BMC Medicine, 19 (1) 52, 1. doi: 10.1186/s12916-021-01924-7 |
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2021 Journal Article Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in EnglandMunday, James D., Sherratt, Katharine, Meakin, Sophie, Endo, Akira, Pearson, Carl A. B., Hellewell, Joel, Abbott, Sam, Bosse, Nikos I., Eggo, Rosalind M., Simons, David, O’Reilly, Kathleen, Russell, Timothy W., Lowe, Rachel, Leclerc, Quentin J., Emery, Jon C., Klepac, Petra, Nightingale, Emily S., Quaife, Matthew, van Zandvoort, Kevin, Knight, Gwenan M., Jombart, Thibaut, Villabona-Arenas, C. Julian, Rees, Eleanor M., Diamond, Charlie, Auzenbergs, Megan, Medley, Graham, Foss, Anna M., Gore-Langton, Georgia R., Deol, Arminder K. ... Funk, Sebastian (2021). Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in England. Nature Communications , 12 (1) 1942, 1. doi: 10.1038/s41467-021-22213-0 |
