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2007 Journal Article Computing the reversal distance between genomes in the presence of multi-gene families via binary integer programmingSuksawatchon, J., Lursinsap, C. and Boden, M. (2007). Computing the reversal distance between genomes in the presence of multi-gene families via binary integer programming. Journal of Bioinformatics and Computational Biology, 5 (1), 117-133. doi: 10.1142/S0219720007002552 |
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2007 Journal Article Identifying novel peroxisomal proteinsHawkins, J., Mahony, D., Maetschke, S., Wakabayashi, M., Teasdale, R. D. and Boden, M. (2007). Identifying novel peroxisomal proteins. Proteins: Structure Function and Bioinformatics, 69 (3), 606-616. doi: 10.1002/prot.21420 |
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2007 Conference Publication Decoupling signal recognition from sequence models of protein secretionBuske, Fabian and Boden, Mikael (2007). Decoupling signal recognition from sequence models of protein secretion. Computational Models for Life Sciences - CMLS'07, Gold Coast, QLD, Australia, 17 - 19 December 2007. Melville, NY, U.S.A.: American Institute of Physics. doi: 10.1063/1.2816618 |
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2007 Conference Publication Reducing the number of support vectors to allay inefficiency of large-scale models in computational biologyDufton, L. and Boden, M. (2007). Reducing the number of support vectors to allay inefficiency of large-scale models in computational biology. Computational Models for Life Sciences - CMLS'07, Queensland, Australia, 17-19 December, 2007. New York: American Institute of Physics. doi: 10.1063/1.2816639 |
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2007 Journal Article Evolving spelling exercises to suit individual student needsBoden, Marie and Boden, Mikael (2007). Evolving spelling exercises to suit individual student needs. Applied Soft Computing, 7 (1), 126-135. doi: 10.1016/j.asoc.2005.03.001 |
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2007 Journal Article Predicting Nuclear LocalizationHawkins, John, Davis, Lynne and Boden, Mikael (2007). Predicting Nuclear Localization. Journal of Proteome Research, 6 (4), 1402-1409. doi: 10.1021/pr060564n |
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2007 Book Chapter Markovian bias of neural-based architectures with feedback connectionsTino, P., Hammer, B. and Boden, M. (2007). Markovian bias of neural-based architectures with feedback connections. Perspectives of Neural-Symbolic Integration. (pp. 95-133) edited by Hammer, B. and Hitzler, P.. Heidelberg, Germany: Springer-Verlag. doi: 10.1007/978-3-540-73954-8_5 |
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2007 Conference Publication Predicting nucleolar proteins using support-vector machinesBodén, Mikael (2007). Predicting nucleolar proteins using support-vector machines. 6th Asia-Pacific Bioinformatics Conference, Kyoto, Japan, 14-17 January, 2008. London, U.K.: Imperial College Press. doi: 10.1142/9781848161092_0005 |
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2007 Conference Publication A comparison of sequence kernels for localization prediction of transmembrane proteinsMaetschke, S., Gallagher, M. and Boden, M. (2007). A comparison of sequence kernels for localization prediction of transmembrane proteins. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology 2007 (CIBCB 2007), Honolulu, Hawaii, 1-5 April 2007. Piscataway, NJ, U.S.A.: IEEE - Institute of Electrical Electronics Engineers Inc.. doi: 10.1109/cibcb.2007.4221246 |
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2007 Conference Publication Understanding prediction systems for HLA-binding peptides and t-cell epitope identificationYou, L., Zhang, P., Boden, M. and Brusic, V. (2007). Understanding prediction systems for HLA-binding peptides and t-cell epitope identification. Pattern Recognition in Bioinformatics (PRIB 2007), Singapore, 1-2 October 2007. Heidelberg, Germany: Springer. doi: 10.1007/978-3-540-75286-8_32 |
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2006 Journal Article Detecting and sorting targeting peptides wtih neural networks and support vector machinesHawkins, John and Boden, Mikael (2006). Detecting and sorting targeting peptides wtih neural networks and support vector machines. Journal of Bioinformatics and Computational Biology, 4 (1), 1-18. doi: 10.1142/S0219720006001771 |
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2006 Journal Article Predicting the solvent accessibility of transmembrane residues from protein sequenceYuan, Z., Zhang, F. S., Davis, M. J., Boden, M. and Teasdale, R. D. (2006). Predicting the solvent accessibility of transmembrane residues from protein sequence. Journal of Proteome Research, 5 (5), 1063-1070. doi: 10.1021/pr050397b |
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2006 Conference Publication Multi-stage redundancy reduction: effective utilisation of small protein data setsHawkins, J. and Boden, M. (2006). Multi-stage redundancy reduction: effective utilisation of small protein data sets. Intelligent Systems for Bioinformatics 2006, Hobart, Australia, 4 December, 2006. New South Wales, Australia: Australian Computer Society Inc.. |
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2006 Journal Article STAR: predicting recombination sites from amino acid sequenceBauer, Denis C., Boden, Mikael, Thier, Ricarda and Gillam, Elizabeth M. (2006). STAR: predicting recombination sites from amino acid sequence. BMC Bioinformatics, 7 (437) 437, 437. doi: 10.1186/1471-2105-7-437 |
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2006 Conference Publication Evolving discriminative motifs for recognizing proteins imported to the peroxisome via the PTS2 pathwayBoden, M. B. and Hawkins, J. C. (2006). Evolving discriminative motifs for recognizing proteins imported to the peroxisome via the PTS2 pathway. 2006 IEEE Congress on Evolutionary Computation, Vancouver, BC, Canada, 16-21 July, 2006. Piscataway, N.J., USA: IEEE. doi: 10.1109/cec.2006.1688653 |
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2006 Journal Article Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structuresBoden, M., Yuan, Z. and Bailey, T. L. (2006). Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures. Bmc Bioinformatics, 7 (68) 68, 1-12. doi: 10.1186/1471-2105-7-68 |
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2006 Journal Article Identifying sequence regions undergoing conformational change via predicted continuum secondary structureBoden, M. and Bailey, T. L. (2006). Identifying sequence regions undergoing conformational change via predicted continuum secondary structure. Bioinformatics, 22 (15), 1809-1814. doi: 10.1093/bioinformatics/btl198 |
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2006 Edited Outputs Proceedings of the A1 2006 Workshop on Intelligent Systems of Bioinformatics (WISB 2006)Mikael Boden and Timothy L. Bailey eds. (2006). Proceedings of the A1 2006 Workshop on Intelligent Systems of Bioinformatics (WISB 2006). Intelligent Systems for Bioinformatics 2006, Hobart, Australia, 4 December, 2006. New South Wales, Australia: Australian Computer Society Inc.. |
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2006 Conference Publication Comparing SVM sequence kernels: A protein subcellular localization themeDavis, L., Hawkins, J. C., Maetschke, S. R. and Boden, M B (2006). Comparing SVM sequence kernels: A protein subcellular localization theme. 2006 Workshop on Intelligent Systems for Bioinformatics (WISB 2006), Hobart, Tas, Australia, 4 December, 2006. New South Wales, Australia: Australian Computer Society Inc.. |
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2006 Conference Publication Higher order HMMs for localization prediction of transmembrance proteinsMaetschke, S. R., Boden, M B and Gallagher, M R (2006). Higher order HMMs for localization prediction of transmembrance proteins. 2006 Workshop on Intelligent Systems for Bioinformatics (WISB 2006), Hobart, Australia, 4 December, 2006. New South Wales, Australia: Australian Computer Society Inc.. |
