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2006 Journal Article Predicting the solvent accessibility of transmembrane residues from protein sequenceYuan, Z., Zhang, F. S., Davis, M. J., Boden, M. and Teasdale, R. D. (2006). Predicting the solvent accessibility of transmembrane residues from protein sequence. Journal of Proteome Research, 5 (5), 1063-1070. doi: 10.1021/pr050397b |
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2006 Conference Publication Multi-stage redundancy reduction: effective utilisation of small protein data setsHawkins, J. and Boden, M. (2006). Multi-stage redundancy reduction: effective utilisation of small protein data sets. Intelligent Systems for Bioinformatics 2006, Hobart, Australia, 4 December, 2006. New South Wales, Australia: Australian Computer Society Inc.. |
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2006 Journal Article STAR: predicting recombination sites from amino acid sequenceBauer, Denis C., Boden, Mikael, Thier, Ricarda and Gillam, Elizabeth M. (2006). STAR: predicting recombination sites from amino acid sequence. BMC Bioinformatics, 7 (437) 437, 437. doi: 10.1186/1471-2105-7-437 |
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2006 Conference Publication Evolving discriminative motifs for recognizing proteins imported to the peroxisome via the PTS2 pathwayBoden, M. B. and Hawkins, J. C. (2006). Evolving discriminative motifs for recognizing proteins imported to the peroxisome via the PTS2 pathway. 2006 IEEE Congress on Evolutionary Computation, Vancouver, BC, Canada, 16-21 July, 2006. Piscataway, N.J., USA: IEEE. doi: 10.1109/cec.2006.1688653 |
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2006 Journal Article Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structuresBoden, M., Yuan, Z. and Bailey, T. L. (2006). Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures. Bmc Bioinformatics, 7 (68) 68, 1-12. doi: 10.1186/1471-2105-7-68 |
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2006 Journal Article Identifying sequence regions undergoing conformational change via predicted continuum secondary structureBoden, M. and Bailey, T. L. (2006). Identifying sequence regions undergoing conformational change via predicted continuum secondary structure. Bioinformatics, 22 (15), 1809-1814. doi: 10.1093/bioinformatics/btl198 |
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2006 Edited Outputs Proceedings of the A1 2006 Workshop on Intelligent Systems of Bioinformatics (WISB 2006)Mikael Boden and Timothy L. Bailey eds. (2006). Proceedings of the A1 2006 Workshop on Intelligent Systems of Bioinformatics (WISB 2006). Intelligent Systems for Bioinformatics 2006, Hobart, Australia, 4 December, 2006. New South Wales, Australia: Australian Computer Society Inc.. |
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2005 Conference Publication Heuristic algorithm for computing reversal distance with multigene families via binary integer programmingSuksawatchon, J., Lursinsap, C. and Bodén, M. (2005). Heuristic algorithm for computing reversal distance with multigene families via binary integer programming. IEEE Computer Society. doi: 10.1109/cibcb.2005.1594916 |
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2005 Conference Publication Predicting structural disruption of proteins caused by crossoverBauer, Denis C., Bodén, Mikael, Thier, Ricarda and Yuan, Zheng (2005). Predicting structural disruption of proteins caused by crossover. IEEE Computer Society. doi: 10.1109/cibcb.2005.1594962 |
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2005 Conference Publication Predicting peroxisomal proteinsHawkins, John and Bodén, Mikael (2005). Predicting peroxisomal proteins. 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB '05, , , November 14, 2005-November 15, 2005. IEEE Computer Society. doi: 10.1109/cibcb.2005.1594956 |
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2005 Journal Article Prediction of subcellular localization using sequence-biased recurrent networksBoden, Mikael and Hawkins, John (2005). Prediction of subcellular localization using sequence-biased recurrent networks. Bioinformatics, 21 (10), 2279-2286. doi: 10.1093/bioinformatics/bti372 |
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2005 Conference Publication Heuristic algorithm for computing reversal distance with multigene families via binary integer programmingSuksawatchon, J., Lursinsap, C. and Boden, M. B. (2005). Heuristic algorithm for computing reversal distance with multigene families via binary integer programming. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, San Diego, U.S.A., 14-15 November 2005. Piscataway, NJ, U.S.A.: IEEE Press. |
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2005 Conference Publication Exploiting sequence dependencies in the prediction of peroxisomal proteinsWakabayashi, M., Hawkins, J. C., Maetschke, S. R. and Boden, M. B. (2005). Exploiting sequence dependencies in the prediction of peroxisomal proteins. Intelligent Data Engineering and Automated Learning - IDEAL2005, Brisbane, Australia, 6-8 July 2005. Berlin, Germany: Springer-Verlag. doi: 10.1007/11508069_59 |
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2005 Conference Publication Predicting peroxisomal proteinsHawkins, J. C. and Boden, M. B. (2005). Predicting peroxisomal proteins. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, San Diego, USA, 14-15 November, 2005. Piscataway, NJ, USA: IEEE Press. |
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2005 Journal Article Improved Access To Sequential Motifs: A Note On The Architectural Bias Of Recurrent NetworksBoden, Mikael and Hawkins, John (2005). Improved Access To Sequential Motifs: A Note On The Architectural Bias Of Recurrent Networks. IEEE Transactions on Neural Networks, 16 (2), 491-494. doi: 10.1109/TNN.2005.844086 |
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2005 Conference Publication Predicting structural disruption of proteins caused by crossoverBauer, Denis C., Boden, Mikael, Thier, Ricarda and Yuan, Zheng (2005). Predicting structural disruption of proteins caused by crossover. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, San Diego, U.S.A., 14-15 November 2005. Piscataway, NJ, U.S.A.: IEEE Press. |
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2005 Conference Publication BLOMAP: An encoding of amino acids which improves signal peptide cleavage site predictionMaetschke, S. R., Towsey, M. and Boden, M. B. (2005). BLOMAP: An encoding of amino acids which improves signal peptide cleavage site prediction. 3rd Asia Pacific Bioinformatics Conference, Singapore, 17-21 January 2005. London, UK: Imperial College Press. doi: 10.1142/9781860947322_0014 |
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2005 Journal Article The applicability of recurrent neural networks for biological sequence analysisHawkins, J. and Boden, M. (2005). The applicability of recurrent neural networks for biological sequence analysis. IEEE-ACM Transactions on Computational Biology and Bioinformatiocs, 2 (3), 243-253. doi: 10.1109/TCBB.2005.44 |
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2005 Conference Publication Detecting residues in targeting peptidesBoden, M. B. and Hawkins, J. C. (2005). Detecting residues in targeting peptides. 3rd Asia-Pacific Bioinformatics Conference, Singapore, 17-21 January, 2005. London, United Kingdom: Imperial College Press. doi: 10.1142/9781860947322_0013 |
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2004 Journal Article Generalization by symbolic abstraction in cascaded recurrent networksBoden, Mikael (2004). Generalization by symbolic abstraction in cascaded recurrent networks. Neurocomputing, 57 (1-4), 87-104. doi: 10.1016/j.neucom.2004.01.006 |
