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2005 Conference Publication Heuristic algorithm for computing reversal distance with multigene families via binary integer programmingSuksawatchon, J., Lursinsap, C. and Bodén, M. (2005). Heuristic algorithm for computing reversal distance with multigene families via binary integer programming. IEEE Computer Society. doi: 10.1109/cibcb.2005.1594916 |
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2005 Conference Publication Predicting structural disruption of proteins caused by crossoverBauer, Denis C., Bodén, Mikael, Thier, Ricarda and Yuan, Zheng (2005). Predicting structural disruption of proteins caused by crossover. IEEE Computer Society. doi: 10.1109/cibcb.2005.1594962 |
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2005 Conference Publication Predicting peroxisomal proteinsHawkins, John and Bodén, Mikael (2005). Predicting peroxisomal proteins. 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB '05, , , November 14, 2005-November 15, 2005. IEEE Computer Society. doi: 10.1109/cibcb.2005.1594956 |
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2005 Journal Article Prediction of subcellular localization using sequence-biased recurrent networksBoden, Mikael and Hawkins, John (2005). Prediction of subcellular localization using sequence-biased recurrent networks. Bioinformatics, 21 (10), 2279-2286. doi: 10.1093/bioinformatics/bti372 |
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2005 Conference Publication Heuristic algorithm for computing reversal distance with multigene families via binary integer programmingSuksawatchon, J., Lursinsap, C. and Boden, M. B. (2005). Heuristic algorithm for computing reversal distance with multigene families via binary integer programming. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, San Diego, U.S.A., 14-15 November 2005. Piscataway, NJ, U.S.A.: IEEE Press. |
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2005 Conference Publication Exploiting sequence dependencies in the prediction of peroxisomal proteinsWakabayashi, M., Hawkins, J. C., Maetschke, S. R. and Boden, M. B. (2005). Exploiting sequence dependencies in the prediction of peroxisomal proteins. Intelligent Data Engineering and Automated Learning - IDEAL2005, Brisbane, Australia, 6-8 July 2005. Berlin, Germany: Springer-Verlag. doi: 10.1007/11508069_59 |
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2005 Conference Publication Predicting peroxisomal proteinsHawkins, J. C. and Boden, M. B. (2005). Predicting peroxisomal proteins. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, San Diego, USA, 14-15 November, 2005. Piscataway, NJ, USA: IEEE Press. |
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2005 Journal Article Improved Access To Sequential Motifs: A Note On The Architectural Bias Of Recurrent NetworksBoden, Mikael and Hawkins, John (2005). Improved Access To Sequential Motifs: A Note On The Architectural Bias Of Recurrent Networks. IEEE Transactions on Neural Networks, 16 (2), 491-494. doi: 10.1109/TNN.2005.844086 |
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2005 Conference Publication Predicting structural disruption of proteins caused by crossoverBauer, Denis C., Boden, Mikael, Thier, Ricarda and Yuan, Zheng (2005). Predicting structural disruption of proteins caused by crossover. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, San Diego, U.S.A., 14-15 November 2005. Piscataway, NJ, U.S.A.: IEEE Press. |
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2005 Conference Publication BLOMAP: An encoding of amino acids which improves signal peptide cleavage site predictionMaetschke, S. R., Towsey, M. and Boden, M. B. (2005). BLOMAP: An encoding of amino acids which improves signal peptide cleavage site prediction. 3rd Asia Pacific Bioinformatics Conference, Singapore, 17-21 January 2005. London, UK: Imperial College Press. doi: 10.1142/9781860947322_0014 |
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2005 Journal Article The applicability of recurrent neural networks for biological sequence analysisHawkins, J. and Boden, M. (2005). The applicability of recurrent neural networks for biological sequence analysis. IEEE-ACM Transactions on Computational Biology and Bioinformatiocs, 2 (3), 243-253. doi: 10.1109/TCBB.2005.44 |
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2005 Conference Publication Detecting residues in targeting peptidesBoden, M. B. and Hawkins, J. C. (2005). Detecting residues in targeting peptides. 3rd Asia-Pacific Bioinformatics Conference, Singapore, 17-21 January, 2005. London, United Kingdom: Imperial College Press. doi: 10.1142/9781860947322_0013 |
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2004 Journal Article Generalization by symbolic abstraction in cascaded recurrent networksBoden, Mikael (2004). Generalization by symbolic abstraction in cascaded recurrent networks. Neurocomputing, 57 (1-4), 87-104. doi: 10.1016/j.neucom.2004.01.006 |
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2003 Conference Publication Using evolutionary noise to improve prediction of rapidly evolving targeting peptidesBoden, M. B. (2003). Using evolutionary noise to improve prediction of rapidly evolving targeting peptides. 2003 Congress on Evolutionary Computation, Canberra, 8-12 December, 2003. Australia: The Institute of Electrical and Electronics Engineers. doi: 10.1109/CEC.2003.1299446 |
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2003 Journal Article Learning the dynamics of embedded clausesBoden, M. and Blair, A. (2003). Learning the dynamics of embedded clauses. Applied Intelligence, 19 (1-2), 51-63. doi: 10.1023/A:1023816706954 |
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2002 Journal Article On learning context-free and context-sensitive languagesBoden, Mikael and Wiles, Janet (2002). On learning context-free and context-sensitive languages. IEEE Transactions on Neural Networks, 13 (2) PII S1045-9227(02)01792-7, 491-493. doi: 10.1109/72.991436 |
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2001 Book Chapter Representation beyond finite states: Alternatives to pushdown automataWiles, J. H., Blair, A. D. and Boden, M. B. (2001). Representation beyond finite states: Alternatives to pushdown automata. A Field Guide to Dynamical Recurrent Networks. (pp. 129-142) edited by J.J. Kolen and S.C. Kremer. Piscataway, New Jersey, U.S.A.: IEEE. |
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2000 Journal Article Context-free and context-sensitive dynamics in recurrent neural networksBoden, Mikael and Wiles, Janet (2000). Context-free and context-sensitive dynamics in recurrent neural networks. Connection Science: journal of neural computing, artificial intelligence, and cognitive research, 12 (3-4), 197-210. doi: 10.1080/095400900750060122 |
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2000 Journal Article Semantic systematicity and context in connectionist networksBoden, Mikael and Niklasson, Lars (2000). Semantic systematicity and context in connectionist networks. Connection Science, 12 (2), 111-142. doi: 10.1080/09540090050129754 |
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1999 Conference Publication Learning to predict a context-free language: Analysis of dynamics in recurrent hidden unitsBoden, M. B., Wiles, J. H., Tonkes, B. and Blair, A. D. (1999). Learning to predict a context-free language: Analysis of dynamics in recurrent hidden units. ICANN'99, Edinburgh, Scotland, 7-10 September, 1999. London, United Kingdom: IEE. doi: 10.1049/cp:19991135 |
