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2014 Book Chapter Polypeptide and protein modeling for drug designO’Mara, Megan L. and Deplazes, Evelyne (2014). Polypeptide and protein modeling for drug design. Encyclopedia of computational neuroscience. (pp. 1-9) New York, United States: Springer . doi: 10.1007/978-1-4614-7320-6_732-1 |
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2014 Journal Article Bacterial mechanosensitive channels: models for studying mechanosensory transductionMartinac, Boris, Nomura, Takeshi, Chi, Gamma, Petrov, Evgeny, Rohde, Paul R., Battle, Andrew R., Foo, Alexander, Constantine, Maryrose, Rothnagel, Rosalba, Carne, Sonia, Deplazes, Evelyne, Cornell, Bruce, Cranfield, Charles G., Hankamer, Ben and Landsberg, Michael J. (2014). Bacterial mechanosensitive channels: models for studying mechanosensory transduction. Antioxidants and Redox Signaling, 20 (6), 952-969. doi: 10.1089/ars.2013.5471 |
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2014 Book Chapter Polypeptide and protein modeling for drug designO'Mara, Megan and Deplazes, Evelyne (2014). Polypeptide and protein modeling for drug design. Encyclopedia of computational neuroscience. (pp. 2439-2447) edited by Dieter Jaeger and Ranu Jung. Berlin, Germany: Springer. doi: 10.1007/978-1-4614-6675-8_732 |
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2012 Journal Article Structural investigation of MscL gating using experimental data and coarse grained MD simulationsDeplazes, Evelyne, Louhivuori, Martti, Jayatilaka, Dylan, Marrink, Siewert J. and Corry, Ben (2012). Structural investigation of MscL gating using experimental data and coarse grained MD simulations. PLoS Computational Biology, 8 (9) e1002683, e1002683. doi: 10.1371/journal.pcbi.1002683 |
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2012 Journal Article Differential effects of lipids and lyso-lipids on the mechanosensitivity of the mechanosensitive channels MscL and MscSNomura, Takeshi, Cranfield, Charles G., Deplazes, Evelyne, Owen, Dylan M., Macmillan, Alex, Battle, Andrew R., Constantine, Maryrose, Sokabe, Masahiro and Martinac, Boris (2012). Differential effects of lipids and lyso-lipids on the mechanosensitivity of the mechanosensitive channels MscL and MscS. Proceedings of the National Academy of Sciences of the United States of America, 109 (22), 8770-8775. doi: 10.1073/pnas.1200051109 |
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2012 Journal Article ExiFRET: Flexible tool for understanding FRET in complex geometriesDeplazes, Evelyne, Jayatilaka, Dylan and Corry, Ben (2012). ExiFRET: Flexible tool for understanding FRET in complex geometries. Journal of Biomedical Optics, 17 (1) 011005, 011005.1-011005.11. doi: 10.1117/1.JBO.17.1.011005 |
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2011 Journal Article Testing the use of molecular dynamics to simulate fluorophore motions and FRETDeplazes, Evelyne, Jayatilaka, Dylan and Corry, Ben (2011). Testing the use of molecular dynamics to simulate fluorophore motions and FRET. Physical Chemistry Chemical Physics, 13 (23), 11045-11054. doi: 10.1039/c1cp20447e |
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2008 Journal Article Resolutions of the Coulomb operatorVarganov, Sergey A., Gilbert, Andrew T. B., Deplazes, Evelyne and Gill, Peter M. W. (2008). Resolutions of the Coulomb operator. Journal of Chemical Physics, 128 (20) 201104, 201104.1-201104.4. doi: 10.1063/1.2939239 |
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2008 Journal Article A combined theoretical and experimental study of the structure and vibrational absorption, vibrational circular dichroism, Raman and Raman optical activity spectra of the L-histidine zwitterionDeplazes, E., van Bronswijk, W., Zhu, F., Barron, L.D., Ma, S., Nafie, L.A. and Jalkanen, K.J. (2008). A combined theoretical and experimental study of the structure and vibrational absorption, vibrational circular dichroism, Raman and Raman optical activity spectra of the L-histidine zwitterion. Theoretical Chemistry Accounts, 119 (1-3), 155-176. doi: 10.1007/s00214-007-0276-8 |
