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2026 Journal Article Non-Invasive Distal Airway Proteomics by Particles in Exhaled Air (PExA) Sampling Demonstrates Shared Proteomic Features with Matched Bronchoalveolar LavageKnuckey, Kiara M., Timmins, Sjane, Pham, Amy, Tan, Maxine E., Groves, Penny L., Lutzky, Viviana P., Rai, Subash K., Carew, Alan M., Chambers, Daniel C. and Apte, Simon H. (2026). Non-Invasive Distal Airway Proteomics by Particles in Exhaled Air (PExA) Sampling Demonstrates Shared Proteomic Features with Matched Bronchoalveolar Lavage. Biomolecules, 16 (10), 1396-1396. doi: 10.3390/biom16101396 |
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2026 Journal Article The ASSIST CLAD study: a phase 2 randomized controlled trial of mesenchymal stromal cells for new-onset chronic lung allograft dysfunctionChambers, Daniel C., Westall, Glen, Darley, David, Musk, Michael, Glanville, Allan R., Malouf, Monique, Holmes-Liew, Chien-Li, Tan, Maxine, Apte, Simon H., Groves, Penelope L., Lutzky, Viviana P., Sturm, Marian J., Lawrence, Sharon, Lawson, Natalee, Singleton, Lisa, Timmins, Sjane, Enever, Debra, Wildermuth, Holly, Daka, Omega, Cooper, Brittany, Winks, Leslie, Haines, Sharon, Zhang, Lai-Ying, Levvey, Bronwyn, Cristiano, Yvonne, Yaw, Meow, Snell, Greg, Trotter, Michael, Carew, Alan ... Hopkins, Peter M.A. (2026). The ASSIST CLAD study: a phase 2 randomized controlled trial of mesenchymal stromal cells for new-onset chronic lung allograft dysfunction. The Journal of Heart and Lung Transplantation, 45 (8), 1310-1318. doi: 10.1016/j.healun.2026.03.032 |
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2026 Journal Article Clinical evaluation of long-read sequencing for telomere length assessment in human blood and lung tissuesLutzky, Viviana P., Rai, Subash K., Tan, Maxine E., Groves, Penny L., Knuckey, Kiara M., Mackintosh, John A., Jones, Mathew J. K., Apte, Simon H. and Chambers, Daniel C. (2026). Clinical Evaluation of Long-Read Sequencing for Telomere Length Assessment in Human Blood and Lung Tissues. Cells, 15 (13) 1165, 1165-1165. doi: 10.3390/cells15131165 |
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2026 Journal Article Single-cell transcriptomics of bronchoalveolar lavage reveals divergent macrophage subpopulations and trajectories in interstitial lung diseaseZhang, Lai-Ying, Allen, Peter C., Lutzky, Viviana P., Apte, Simon H., Groves, Penny L., Tan, Maxine E., De Silva, Tharushi, Spenceley, Eleanor R., McCloy, Rachael A., Nguyen, Quan H., Powell, Joseph E., Chambers, Daniel C. and O’Sullivan, Brendan J. (2026). Single-cell transcriptomics of bronchoalveolar lavage reveals divergent macrophage subpopulations and trajectories in interstitial lung disease. PLOS One, 21 (4) e0347852, 1-18. doi: 10.1371/journal.pone.0347852 |
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2026 Journal Article Alveolar lipid–macrophage networks at the intersection of pulmonary fibrosisApte, Simon H., Lutzky, Viviana P., Groves, Penny L. and Chambers, Daniel C. (2026). Alveolar lipid–macrophage networks at the intersection of pulmonary fibrosis. Cells, 15 (8) 668, 1-23. doi: 10.3390/cells15080668 |
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2026 Conference Publication Deconvoluting fibrotic niches in idiopathic pulmonary fibrosis lungs using single-cell multiomicsCallen, Peter, Bartie, Caitlin, Tuzesi, Agota, Marx, Scarlett, McCloy, Rachael A., Sagi-Zsigmond, Eszter, Apte, Simon H., Tan, Maxine E., Chambers, Daniel C. and Powell, Joseph E. (2026). DECONVOLUTING FIBROTIC NICHES IN IDIOPATHIC PULMONARY FIBROSIS LUNGS USING SINGLE-CELL MULTIOMICS. HOBOKEN: WILEY. |
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2026 Conference Publication AI interpretation of broncho-alveolar lavage cytology for personalised pulmonary fibrosis careHockey, Levi, Xiong, Zherui, Kaur, Ashandeep, Apte, Simon H., Groves, Penny L., Tan, Maxine E., Lutzky, Viviana P., Knuckley, Kiara, Zhang, Lai-Ying, Timmins, Sjane, Carew, Alan, Nguyen, Quan and Chambers, Daniel C. (2026). AI interpretation of broncho-alveolar lavage cytology for personalised pulmonary fibrosis care. Unknown, Unknown, Unknown. Richmond, VIC Australia: John Wiley & Sons. |
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2026 Journal Article Proteome-wide serological profiling reveals broad elevation of EBV immunity in idiopathic pulmonary fibrosisSarathkumara, Yomani D., Knuckey, Kiara M., Lutzky, Viviana P., Groves, Penny L., Tan, Maxine E., Chambers, Daniel C., Proietti, Carla, Doolan, Denise L. and Apte, Simon H. (2026). Proteome-wide serological profiling reveals broad elevation of EBV immunity in idiopathic pulmonary fibrosis. International Journal of Molecular Sciences, 27 (2) 783, 1-14. doi: 10.3390/ijms27020783 |
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2026 Journal Article Treatment of Pseudomonas by removal of cloaking antibodies: is common polysaccharide antigen a factor?Monteith, Joshua N., Ledger, Emma L., Chamoun, Michelle N., Henderson, Ian R., Goldberg, Joanna B., Smith, Daniel, Chambers, Daniel C., Apte, Simon H. and Wells, Timothy J. (2026). Treatment of Pseudomonas by removal of cloaking antibodies: is common polysaccharide antigen a factor?. The Journal of Infectious Diseases, 233 (4) jiag002, e948-e956. doi: 10.1093/infdis/jiag002 |
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2025 Journal Article Silicosis research priorities for health care, research, and health and safety professionals, and for people exposed to silica in Australia: a research priority setting exerciseBarnes, Hayley, Mathieu, Sharna, Glass, Deborah C., Sim, Malcolm R., Fritschi, Lin, Dickinson, Joanne L., Chambers, Daniel C., Driscoll, Tim R., Edwards, Graeme, LaBranche, Nikky, Jones, Catherine, Bourke, Jane E., Hoy, Ryan F., Jenkins, Christine R., Apte, Simon, Holland, Anne and Tikellis, Gabriella (2025). Silicosis research priorities for health care, research, and health and safety professionals, and for people exposed to silica in Australia: a research priority setting exercise. Medical Journal of Australia, 223 (5), 257-264. doi: 10.5694/mja2.70013 |
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2025 Journal Article Transcriptomic plasticity of human alveolar macrophages revealed by single-cell RNA sequencing following drug exposure: implications for therapeutic developmentGroves, Penny L., Hockey, Levi, O’Sullivan, Brendan J., Zhang, Lai-Ying, Xiong, Zherui, Nguyen, Quan H., Tan, Maxine E., Lutzky, Viviana P., Davis, Rohan A., Chambers, Daniel C. and Apte, Simon H. (2025). Transcriptomic plasticity of human alveolar macrophages revealed by single-cell RNA sequencing following drug exposure: implications for therapeutic development. International Journal of Molecular Sciences, 26 (9) 4439, 4439. doi: 10.3390/ijms26094439 |
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2025 Conference Publication Efficacy and Safety of Danazol in Pulmonary Fibrosis Associated With Short Telomeres: A Phase 2 Randomized Clinical TrialMackintosh, J., Wells, J., Lutzky, V., Yerkovich, S.T., Yeh, R., Hsu, A., Pickett, H., Pietsch, M., Cooper, B., Enever, D., Bancroft, S., Apte, S., Tan, M., Dickinson, J., Lucas, S., Selvadurai, H., Grainge, C., Hopkins, P., Glaspole, I., Reynolds, P.N., Wrobel, J.P., Goh, N., Corte, T.J. and Chambers, D. (2025). Efficacy and Safety of Danazol in Pulmonary Fibrosis Associated With Short Telomeres: A Phase 2 Randomized Clinical Trial. ATS International Conference, San Francisco, CA United States, 16-21 May 2025. New York, NY United States: American Thoracic Society. doi: 10.1164/ajrccm.2025.211.abstracts.a1010 |
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2025 Conference Publication Iron alters the transcriptome and volatile organic compounds in the BAL of silicosis patientsAloe, C., Goh, N., Wang, H., McQualter, J., Doomun, S., De Souza, D., Pujari, R., Papagianis, P., Apte, S., Barnes, H., Vlahos, R., McDonald, C., Hoy, R., Chambers, D., Leong, T. and Bozinovski, S. (2025). IRON ALTERS THE TRANSCRIPTOME AND VOLATILE ORGANIC COMPOUNDS IN THE BAL OF SILICOSIS PATIENTS. HOBOKEN: WILEY. |
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2024 Journal Article Iron Alters the Transcriptome and Volatile Organic Compounds in the BAL of Patients with SilicosisAloe, Christian Anthony, Goh, Nicole Soo Leng, Wang, Hao, McQualter, Jonathan Luke, Doomun, Sheik Nadeem Elahee, De Souza, David, Pujari, Reshma, Papagianis, Paris Claris, Apte, Simon Hall, Barnes, Hayley, Vlahos, Ross, McDonald, Christine Faye, Hoy, Ryan Francis, Chambers, Daniel Charles, Leong, Tracy Li-Tsein and Bozinovski, Steven (2024). Iron Alters the Transcriptome and Volatile Organic Compounds in the BAL of Patients with Silicosis. American Journal of Respiratory Cell and Molecular Biology, 71 (5) PMID 8917225, 617-621. doi: 10.1165/rcmb.2024-0181le |
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2024 Conference Publication Cellular Genomics of Bronchoalveolar Lavage Reveals Insight into Mechanisms of Human Pulmonary FibrosisZhang, L.-Y., Apte, S., Lutzky, V., Groves, P., Tan, M., de Silva, T.A., Nguyen, Q., Powell, J., Chambers, D. and O'Sullivan, B. (2024). Cellular Genomics of Bronchoalveolar Lavage Reveals Insight into Mechanisms of Human Pulmonary Fibrosis. American Thoracic Society 2024 International Conference, San Diego, CA United States, 17-22 May 2024. New York, NY United States: American Thoracic Society. doi: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a2580 |
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2024 Conference Publication The Assist CLAD Study - Mesenchymal Stromal Cell Therapy in Chronic Lung Allograft DysfunctionChambers, D.C., Westall, G., Darley, D., Glanville, A., Malouf, M., Musk, M., Sturm, M., Holmes-Liew, C., Lawrence, S., Bushell, D., Holsworth, L., Lawson, N., Singleton, L., Timmins, S., Enever, D., Wildermuth, H., Daka, O., Cooper, B., Apte, S.H., Pham, A., Haines, S., Zhang, L., Tan, M., Groves, P., Lutzky, V.P., Levvey, B., Cristiano, Y., Yaw, M., Winks, L. ... Hopkins, P. (2024). The Assist CLAD Study - Mesenchymal Stromal Cell Therapy in Chronic Lung Allograft Dysfunction. ISHLT 44th Annual Meeting and Scientific Sessions, Prague, Czech Republic, 10-13 April 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/j.healun.2024.02.016 |
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2024 Conference Publication Longitudinal Increases in Bronchoalveolar Lavage Interleukin-6, Interleukin-8, Macrophage Inflammatory Protein-1a, and Transforming Growth Factor ß Predict Progressive Chronic Lung Allograft DysfunctionO'Sullivan, B., Tan, M., Apte, S.H., de Silva, T., Groves, P., Lutzky, V.P., Westall, G., Darley, D., Musk, M., Glanville, A., Malouf, M., Holmes-Liew, C., Sturm, M., Lawrence, S., Bushell, D., Holsworth, L., Lawson, N., Singleton, L., Timmins, S., Enever, D., Wildermuth, H., Daka, O., Cooper, B., Pham, A., Winks, L., Haines, S., Zhang, L., Levvey, B., Cristiano, Y. ... Chambers, D.C. (2024). Longitudinal Increases in Bronchoalveolar Lavage Interleukin-6, Interleukin-8, Macrophage Inflammatory Protein-1a, and Transforming Growth Factor ß Predict Progressive Chronic Lung Allograft Dysfunction. ISHLT 44th Annual Meeting and Scientific Sessions, Prague, Czech Republic, 10-13 April 2024. Philadelphia, PA United States: Elsevier. doi: 10.1016/j.healun.2024.02.425 |
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2024 Conference Publication Telomere length in Australian adults with pulmonary fibrosisMackintosh, J., Zhang, L., Lutzky, , Tan, M., Apte, S., Groves, P., O'Sullivan, B., Watson, S., Dixon, O., Hopkins, P., Corte, T. and Chambers, D. (2024). Telomere length in Australian adults with pulmonary fibrosis. HOBOKEN: WILEY. |
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2024 Journal Article Immunological landscapes in lung transplantation: Insights from T cell profiling in BAL and PBMCde Silva, Tharushi Ayanthika, Apte, Simon, Voisey, Joanne, Spann, Kirsten, Tan, Maxine, Chambers, Daniel and O’Sullivan, Brendan (2024). Immunological landscapes in lung transplantation: Insights from T cell profiling in BAL and PBMC. International Journal of Molecular Sciences, 25 (5) 2476, 1-16. doi: 10.3390/ijms25052476 |
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2023 Journal Article A methodological approach to identify natural compounds with antifibrotic activity and the potential to treat pulmonary fibrosis using single-cell sequencing and primary human lung macrophagesApte, Simon H., Groves, Penny L., Tan, Maxine E., Lutzky, Viviana P., de Silva, Tharushi, Monteith, Joshua N., Yerkovich, Stephanie T., O’Sullivan, Brendan J., Davis, Rohan A. and Chambers, Daniel C. (2023). A methodological approach to identify natural compounds with antifibrotic activity and the potential to treat pulmonary fibrosis using single-cell sequencing and primary human lung macrophages. International Journal of Molecular Sciences, 24 (20) 15104, 1-14. doi: 10.3390/ijms242015104 |
