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2010 Journal Article A call for standardized classification of metagenome projectsIvanova, Natalia, Tringe, Susannah G., Liolios, Konstantinos, Liu, Wen-Tso, Morrison, Norman, Hugenholtz, Philip and Kyrpides, Nikos C. (2010). A call for standardized classification of metagenome projects. Environmental Microbiology, 12 (7), 1803-1805. doi: 10.1111/j.1462-2920.2010.02270.x |
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2010 Journal Article Complete genome sequence of Aminobacterium colombiense type strain (ALA-1)Chertkov, Olga, Sikorski, Johannes, Brambilla, Evelyne, Lapidus, Alla, Copeland, Alex, Glavina Del Rio, Tijana, Nolan, Matt, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Detter, John C., Bruce, David, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Spring, Stefan, Rohde, Manfred ... Klenk, Hans-Peter (2010). Complete genome sequence of Aminobacterium colombiense type strain (ALA-1). Standards in Genomic Sciences, 2 (3), 280-289. doi: 10.4056/sigs.902116 |
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2010 Journal Article Complete genome sequence of Brachyspira murdochii type strain (56-150(T))Pati, Amrita, Sikorski, Johannes, Gronow, Sabine, Munk, Christine, Lapidus, Alla, Copeland, Alex, Del Tio, Tijana Glavina, Nolan, Matt, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Detter, John C., Bruce, David, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Spring, Stefan ... Klenk, Hans-Peter (2010). Complete genome sequence of Brachyspira murdochii type strain (56-150(T)). Standards in Genomic Sciences, 2 (3), 260-269. doi: 10.4056/sigs.831993 |
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2010 Journal Article Complete genome sequence of Thermobispora bispora type strain (R51(T))Liolios, Konstantinos, Sikorski, Johannes, Jando, Marlen, Lapidus, Alla, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Woyke, Tanja, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Chertkov, Olga, Kuske, Cheryl, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Brettin, Thomas, Rohde, Manfred, Goeker, Markus ... Kyrpides, Nikos C. (2010). Complete genome sequence of Thermobispora bispora type strain (R51(T)). Standards in Genomic Sciences, 2 (3), 318-326. doi: 10.4056/sigs.962171 |
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2010 Journal Article Complete genome sequence of Archaeoglobus profundus type strain (AV18(T))von Jan, Mathias, Lapidus, Alla, Del Rio, Tijana Glavina, Copeland, Alex, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Goodwin, Lynne, Han, Cliff, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Chertkov, Olga, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Saunders, Elizabeth, Brettin, Thomas, Detter, John C., Chain, Patrick, Eichinger, Konrad ... Klenk, Hans-Peter (2010). Complete genome sequence of Archaeoglobus profundus type strain (AV18(T)). Standards in Genomic Sciences, 2 (3), 327-346. doi: 10.4056/sigs.942153 |
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2010 Journal Article Complete genome sequence of Thermosphaera aggregans type strain (M11TL(T))Spring, Stefan, Rachel, Reinhard, Lapidus, Alla, Davenport, Karen, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia C., Brettin, Thomas, Detter, John C., Tapia, Roxanne, Han, Cliff, Heimerl, Thomas, Weikl, Fabian ... Klenk, Hans-Peter (2010). Complete genome sequence of Thermosphaera aggregans type strain (M11TL(T)). Standards in Genomic Sciences, 2 (3), 245-259. doi: 10.4056/sigs.821804 |
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2010 Journal Article Strategies for enhancing the effectiveness of metagenomic-based enzyme discovery in lignocellulolytic microbial communitiesDeAngelis, Kristen M., Gladden, John M., Allgaier, Martin, D'haeseleer, Patrik, Fortney, Julian L., Reddy, Amitha, Hugenholtz, Philip, Singer, Steven W., Vander Gheynst, Jean S., Silver, Whendee L., Simmons, Blake A. and Hazen, Terry C. (2010). Strategies for enhancing the effectiveness of metagenomic-based enzyme discovery in lignocellulolytic microbial communities. BioEnergy Research, 3 (2), 146-158. doi: 10.1007/s12155-010-9089-z |
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2010 Journal Article Experimental factors affecting PCR-based estimates of microbial species richness and evennessEngelbrektson, Anna, Kunin, Victor, Wrighton, Kelly C., Zvenigorodsky, Natasha, Chen, Feng, Ochman, Howard and Hugenholtz, Philip (2010). Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME Journal, 4 (5), 642-647. doi: 10.1038/ismej.2009.153 |
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2010 Journal Article Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludgeHe, Shaomei, Kunin, Victor, Haynes, Matthew, Martin, Hector Garcia, Ivanova, Natalia, Rohwer, Forest, Hugenholtz, Philip and McMahon, Katherine D. (2010). Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge. Environmental Microbiology, 12 (5), 1205-1217. doi: 10.1111/j.1462-2920.2010.02163.x |
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2010 Journal Article Complete genome sequence of Segniliparus rotundus type strain (CDC 1076(T))Sikorski, Johannes, Lapidus, Alla, Copeland, Alex, Misra, Monica, Del Rio, Tijana Glavina, Nolan, Matt, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Jando, Marlen, Schneider, Susanne, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Chertkov, Olga, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Detter, John C. ... Klenk, Hans-Peter (2010). Complete genome sequence of Segniliparus rotundus type strain (CDC 1076(T)). Standards in Genomic Sciences, 2 (2), 203-211. doi: 10.4056/sigs.791633 |
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2010 Journal Article Complete genome sequence of Nakamurella multipartita type strain (Y-104(T))Tice, Hope, Mayilraj, Shanmugam, Sims, David, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Del Rio, Tijana Glavina, Copeland, Alex, Cheng, Jan-Fang, Meincke, Linda, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Detter, John C., Brettin, Thomas, Rohde, Manfred, Goeker, Markus, Bristow, Jim, Eisen, Jonathan A. ... Chen, Feng (2010). Complete genome sequence of Nakamurella multipartita type strain (Y-104(T)). Standards in Genomic Sciences, 2 (2), 168-175. doi: 10.4056/sigs.721316 |
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2010 Journal Article Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300(T))Harmon-Smith, Miranda, Celia, Laura, Chertkov, Olga, Lapidus, Alla, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Detter, John C., Bruce, David, Goodwin, Lynne, Pitluck, Sam, Pati, Amrita, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brettin, Thomas, Goeker, Markus, Beck, Brian ... Chen, Feng (2010). Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300(T)). Standards in Genomic Sciences, 2 (2), 220-227. doi: 10.4056/sigs.811799 |
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2010 Journal Article Complete genome sequence of Spirosoma linguale type strain (1(T))Lail, Kathleen, Sikorski, Johannes, Saunders, Elizabeth, Lapidus, Alla, Del Rio, Tijana Glavina, Copeland, Alex, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Brettin, Thomas, Detter, John C., Schuetze, Andrea, Rohde, Manfred, Tindall, Brian J. ... Chen, Feng (2010). Complete genome sequence of Spirosoma linguale type strain (1(T)). Standards in Genomic Sciences, 2 (2), 176-185. doi: 10.4056/sigs.741334 |
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2010 Journal Article Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07(T))Foster, Brian, Pukall, Ruediger, Abt, Birte, Nolan, Matt, Del Rio, Tijana Glavina, Chen, Feng, Lucas, Susan, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Chertkov, Olga, Brettin, Thomas, Han, Cliff, Detter, John C., Bruce, David, Goodwin, Lynne, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chain, Patrick, Rohde, Manfred, Goeker, Markus ... Lapidus, Alla (2010). Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07(T)). Standards in Genomic Sciences, 2 (1), 1-8. doi: 10.4056/sigs.571102 |
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2010 Journal Article Complete genome sequence of Vulcanisaeta distributa type strain (IC-017(T))Mavromatis, Konstantinos, Sikorski, Johannes, Pabst, Elke, Teshima, Hazuki, Lapidus, Alla, Lucas, Susan, Nolan, Matt, Del Rio, Tijana Glavina, Cheng, Jan-Fang, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Spring, Stefan, Goeker, Markus, Wirth, Reinhard, Woyke, Tanja, Bristow, James, Eisen, Jonathan A. ... Kyrpides, Nikos C. (2010). Complete genome sequence of Vulcanisaeta distributa type strain (IC-017(T)). Standards in Genomic Sciences, 3 (2), 117-125. doi: 10.4056/sigs.1113067 |
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2010 Journal Article Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost communityAllagier, Martin, Reddy, Amitha, Park, Joshua I., Ivanova, Natalia, D'haeseleer, Patrik, Lowry, Steve, Sapra, Rajat, Hazen, Terry C., Simmons, Blake A., VanderGheynst, Jean S. and Hugenholtz, Philip (2010). Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community. PLoS One, 5 (1) e8812, e8812-1-e8812-9. doi: 10.1371/journal.pone.0008812 |
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2010 Journal Article Complete genome sequence of Kribbella flavida type strain (IFO 14399(T))Pukall, Ruediger, Lapidus, Alla, Del Rio, Tijana Glavina, Copeland, Alex, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, LaButti, Kurt, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pitluck, Sam, Bruce, David, Goodwin, Lynne, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Rohde, Manfred, Goeker, Markus, Bristow, Jim, Eisen, Jonathan A., Markowitz, Victor ... Brettin, Thomas (2010). Complete genome sequence of Kribbella flavida type strain (IFO 14399(T)). Standards in Genomic Sciences, 2 (2), 186-193. doi: 10.4056/sigs.731321 |
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2010 Journal Article Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022(T))Pati, Amrita, LaButti, Kurt, Pukall, Ruediger, Nolan, Matt, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Copeland, Alex, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pitluck, Sam, Bruce, David, Goodwin, Lynne, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Brettin, Thomas, Sikorski, Johannes, Rohde, Manfred, Goeker, Markus, Bristow, Jim, Eisen, Jonathan A. ... Lapidus, Alla (2010). Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022(T)). Standards in Genomic Sciences, 2 (1), 49-56. doi: 10.4056/sigs.601105 |
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2010 Journal Article Complete genome sequence of Veillonella parvula type strain (Te3(T))Gronow, Sabine, Welnitz, Sabine, Lapidus, Alla, Nolan, Matt, Ivanova, Natalia, Del Rio, Tijana Glavina, Copeland, Alex, Chen, Feng, Tice, Hope, Pitluck, Sam, Cheng, Jan-Fang, Saunders, Elizabeth, Brettin, Thomas, Han, Cliff, Detter, John C., Bruce, David, Goodwin, Lynne, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Pati, Amrita, Mavromatis, Konstantinos, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Chain, Patrick, Rohde, Manfred, Goeker, Markus ... Lucas, Susan (2010). Complete genome sequence of Veillonella parvula type strain (Te3(T)). Standards in Genomic Sciences, 2 (1), 57-65. doi: 10.4056/sigs.521107 |
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2010 Journal Article Complete genome sequence of Intrasporangium calvum type strain (7 KIPT)Del Rio, Tijana Glavina, Chertkov, Olga, Yasawong, Montri, Lucas, Susan, Deshpande, Shweta, Cheng, Jan-Fang, Detter, Chris, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Pukall, Ruediger, Sikorski, Johannes, Goeker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor ... Lapidus, Alla (2010). Complete genome sequence of Intrasporangium calvum type strain (7 KIPT). Standards in Genomic Sciences, 3 (3), 294-303. doi: 10.4056/sigs.1263355 |
