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2019

Book Chapter

“SpeedGS” to accelerate genetic gain in spring wheat

Voss-Fels, Kai P., Herzog, Eva, Dreisigacker, Susanne, Sukumaran, Sivakumar, Watson, Amy, Frisch, Matthias, Hayes, Ben and Hickey, Lee T. (2019). “SpeedGS” to accelerate genetic gain in spring wheat. Applications of genetic and genomic research in cereals. (pp. 303-327) edited by Thomas Miedaner and Viktor Korzun. Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-102163-7.00014-4

“SpeedGS” to accelerate genetic gain in spring wheat

2019

Journal Article

Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap

Giuffra, Elisabetta, Tuggle, Christopher K., and the FAANG Consortium, Archibald, Alan L., Acloque, Herve, Chamberlain, Amanda J., Cochrane, Guy, Daetwyler, Hans D., Djebali, Sarah, Eory, Lel, Foissac, Sylvain, Goddard, Michael E., Groenen, Martien A. M., Halstead, Michelle, Harrison, Peter W., Hayes, Benjamin J., Kern, Colin, Khatib, Hasan, Kuo, Richard I., MacHugh, David E., Macleod, Iona M., Madsen, Ole, Reecy, James M., Ross, Pablo J., Watson, Mick, Wells, Jerry M. and Zhou, Huaijun (2019). Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap. Annual Review of Animal Biosciences, Vol 7, 7 (1), 65-88. doi: 10.1146/annurev-animal-020518-114913

Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap

2019

Journal Article

Prediction of genetic value for sweet cherry fruit maturity among environments using a 6K SNP array

Hardner, Craig M., Hayes, Ben J., Kumar, Satish, Vanderzande, Stijn, Cai, Lichun, Piaskowski, Julia, Quero-Garcia, José, Campoy, José Antonio, Barreneche, Teresa, Giovannini, Daniela, Liverani, Alessandro, Charlot, Gérard, Villamil-Castro, Miguel, Oraguzie, Nnadozie and Peace, Cameron P. (2019). Prediction of genetic value for sweet cherry fruit maturity among environments using a 6K SNP array. Horticulture Research, 6 (1) 6, 6. doi: 10.1038/s41438-018-0081-7

Prediction of genetic value for sweet cherry fruit maturity among environments using a 6K SNP array

2019

Conference Publication

Production and polledness: genetic correlations between target traits in beef cattle

Randhawa, Imtiaz A. S. , Porto-Neto, Laercio R. , McGowan, Michael R. , Hayes, Ben J. , Schutt, Karen M. and Lyons, Russell E. (2019). Production and polledness: genetic correlations between target traits in beef cattle. AAABG2019, Armidale, Australia, 27 October - 1 November 2019.

Production and polledness: genetic correlations between target traits in beef cattle

2019

Conference Publication

New diagnostic tools helping poll breeding for sustainable beef production

Randhawa, I. A. S, Hayes, B. J., Porto-Neto, L. R., Schutt, K. M., McGowan, M. R., Burns, B. M. and Lyons, R. E. (2019). New diagnostic tools helping poll breeding for sustainable beef production. Northern Beef Research Update Conference (NBRUC2019), Brisbane, QLD Australia, 19-22 August 2019.

New diagnostic tools helping poll breeding for sustainable beef production

2019

Conference Publication

Application of genomic selection to Vietnamese household dairy herds

Bang, N.N., Hayes, B.J., Randhawa, I.A.S., Lyons, R.E., Gaughan, J.B., Chanh, N.V., Trach, N.X., Khang, N.D. and McNeill, D.M. (2019). Application of genomic selection to Vietnamese household dairy herds. 23rd AABG Conference, Armidale, Australia, 27 October - 1 November 2019.

Application of genomic selection to Vietnamese household dairy herds

2019

Other Outputs

SNP and phenotype data, and GWAS results for macadamia breeding progeny population

O'Connor, Katie, Hayes, Ben, Hardner, Craig, Alam, Mobashwer and Topp, Bruce (2019). SNP and phenotype data, and GWAS results for macadamia breeding progeny population. The University of Queensland. (Dataset) doi: 10.14264/uql.2019.808

SNP and phenotype data, and GWAS results for macadamia breeding progeny population

2019

Journal Article

Towards multi-breed genomic evaluations for female fertility of tropical beef cattle

Hayes, Ben J., Corbet, Nicholas J., Allen, Jack M., Laing, Alan R., Fordyce, Geoffry, Lyons, Russel, McGowan, Michael R. and Burns, Brian M. (2019). Towards multi-breed genomic evaluations for female fertility of tropical beef cattle. Journal of Animal Science, 97 (1), 55-62. doi: 10.1093/jas/sky417

Towards multi-breed genomic evaluations for female fertility of tropical beef cattle

2019

Journal Article

Towards a new phenotype for tick resistance in beef and dairy cattle: a review

Burrow, Heather M., Mans, Ben J., Cardoso, Fernando F., Birkett, Michael A., Kotze, Andrew C., Hayes, Ben J., Mapholi, Ntanganedzeni, Dzama, Kennedy, Marufu, Munyaradzi C., Githaka, Naftaly W. and Djikeng, Appolinaire (2019). Towards a new phenotype for tick resistance in beef and dairy cattle: a review. Animal Production Science, 59 (8), 1401-1427. doi: 10.1071/AN18487

Towards a new phenotype for tick resistance in beef and dairy cattle: a review

2019

Conference Publication

Poll testing efficiency, accuracy and trends in Australian cattle

Randhawa, I.A.S., McGowan, M.R., Porto-Neto, L.R., Hayes, B.J., Schutt, K.M. and Lyons, R.E. (2019). Poll testing efficiency, accuracy and trends in Australian cattle. Association for the Advancement in Animal Breeding Genetics, Armidale, Australia, 27 October - 1 November 2019.

Poll testing efficiency, accuracy and trends in Australian cattle

2018

Journal Article

Accelerating crop genetic gains with genomic selection

Voss-Fels, Kai Peter, Cooper, Mark and Hayes, Ben John (2018). Accelerating crop genetic gains with genomic selection. Theoretical and Applied Genetics, 132 (3), 669-686. doi: 10.1007/s00122-018-3270-8

Accelerating crop genetic gains with genomic selection

2018

Journal Article

Sequencing the mosaic genome of Brahman cattle identifies historic and recent introgression including polled

Koufariotis, L., Hayes, B. J., Kelly, M., Burns, B. M., Lyons, R., Stothard, P., Chamberlain, A. J. and Moore, S. (2018). Sequencing the mosaic genome of Brahman cattle identifies historic and recent introgression including polled. Scientific Reports, 8 (1) 17761, 17761. doi: 10.1038/s41598-018-35698-5

Sequencing the mosaic genome of Brahman cattle identifies historic and recent introgression including polled

2018

Journal Article

Harnessing genomic information for livestock improvement

Georges, Michel, Charlier, Carole and Hayes, Ben (2018). Harnessing genomic information for livestock improvement. Nature Reviews Genetics, 20 (3), 135-156. doi: 10.1038/s41576-018-0082-2

Harnessing genomic information for livestock improvement

2018

Journal Article

Candidate mutations used to aid the prediction of genetic merit for female reproductive traits in tropical beef cattle

Fortes, Marina Rufino Salinas, Enculescu, Charmaine, Porto Neto, Laercio R., Lehnert, Sigrid A., McCulloch, Russell and Hayes, Ben (2018). Candidate mutations used to aid the prediction of genetic merit for female reproductive traits in tropical beef cattle. Revista Brasileira de Zootecnia, 47 e20170226. doi: 10.1590/rbz4720170226

Candidate mutations used to aid the prediction of genetic merit for female reproductive traits in tropical beef cattle

2018

Journal Article

Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

Xiang, Ruidong, Hayes, Ben J., Vander Jagt, Christy J., MacLeod, Iona M., Khansefid, Majid, Bowman, Phil J., Yuan, Zehu, Prowse-Wilkins, Claire P., Reich, Coralie M., Mason, Brett A., Garner, Josie B., Marett, Leah C., Chen, Yizhou, Bolormaa, Sunduimijid, Daetwyler, Hans D., Chamberlain, Amanda J. and Goddard, Michael E. (2018). Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues. BMC Genomics, 19 (1) 521, 521. doi: 10.1186/s12864-018-4902-8

Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

2018

Conference Publication

Variation in floral and growth traits in a macadamia breeding population

O’Connor, K.M., Hardner, C.M., Alam, M.M., Hayes, B.J. and Topp, B.L. (2018). Variation in floral and growth traits in a macadamia breeding population. International Symposia on Tropical and Temperate Horticulture (ISTTH), Cairns, QLD, Australia, 20-25 November, 2016. Leuven, Belgium: International Society for Horticultural Science (ISHS). doi: 10.17660/actahortic.2018.1205.77

Variation in floral and growth traits in a macadamia breeding population

2018

Journal Article

Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits

Wang, Min, Hancock, Timothy P., Chamberlain, Amanda J., Vander Jagt, Christy J., Pryce, Jennie E., Cocks, Benjamin G., Goddard, Mike E. and Hayes, Benjamin J. (2018). Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits. BMC Genomics, 19 (1) 395, 395. doi: 10.1186/s12864-018-4800-0

Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits

2018

Journal Article

Benchmarking Bayesian genome enabled-prediction models for age at first calving in Nellore cows

Mota, Rodrigo Reis, Silva, Fabyano Fonseca e, Guimarães, Simone Eliza Facioni, Hayes, Ben, Fortes, Marina Rufino Salinas, Kelly, Matthew John, Guimarães, José Domingos, Penitente-Filho, Jurandy Mauro, Ventura, Henrique Torres and Moore, Stephen (2018). Benchmarking Bayesian genome enabled-prediction models for age at first calving in Nellore cows. Livestock Science, 211, 75-79. doi: 10.1016/j.livsci.2018.03.009

Benchmarking Bayesian genome enabled-prediction models for age at first calving in Nellore cows

2018

Journal Article

Insights into population genetics and evolution of polyploids and their ancestors

Jighly, Abdulqader, Lin, Zibei, Forster, John W., Spangenberg, German C., Hayes, Ben J. and Daetwyler, Hans D. (2018). Insights into population genetics and evolution of polyploids and their ancestors. Molecular Ecology Resources, 18 (5), 1157-1172. doi: 10.1111/1755-0998.12896

Insights into population genetics and evolution of polyploids and their ancestors

2018

Journal Article

The cost-benefit of genomic testing of heifers and using sexed semen in pasture-based dairy herds

Newton, J. E., Hayes, B. J. and Pryce, J. E. (2018). The cost-benefit of genomic testing of heifers and using sexed semen in pasture-based dairy herds. Journal of Dairy Science, 101 (7), 6159-6173. doi: 10.3168/jds.2017-13476

The cost-benefit of genomic testing of heifers and using sexed semen in pasture-based dairy herds