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2023 Journal Article Genomic analyses of Burkholderia respiratory isolates indicates two evolutionarily distinct B. anthina cladesPham, Amy, Volmer, James G., Chambers, Daniel C., Smith, Daniel J., Reid, David W., Burr, Lucy and Wells, Timothy J. (2023). Genomic analyses of Burkholderia respiratory isolates indicates two evolutionarily distinct B. anthina clades. Frontiers in Microbiology, 14 1274280, 1-14. doi: 10.3389/fmicb.2023.1274280 |
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2023 Journal Article Plugging the leaks: antibiotic resistance at human-animal interfaces in low-resource settingsNadimpalli, Maya L., Stegger, Marc, Viau, Roberto, Yith, Vuthy, de Lauzanne, Agathe, Sem, Nita, Borand, Laurence, Huynh, Bich-tram, Brisse, Sylvain, Passet, Virginie, Overballe-Petersen, Soren, Aziz, Maliha, Gouali, Malika, Jacobs, Jan, Phe, Thong, Hungate, Bruce A., Leshyk, Victor O., Pickering, Amy J., Gravey, Francois, Liu, Cindy M., Johnson, Timothy J., Le Hello, Simon and Price, Lance B. (2023). Plugging the leaks: antibiotic resistance at human-animal interfaces in low-resource settings. Frontiers in Ecology and the Environment, 21 (9), 428-434. doi: 10.1002/fee.2639 |
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2023 Journal Article Leveraging the COVID-19 pandemic as a natural experiment to assess changes in antibiotic use and antibiotic-resistant E. coli carriage in semi-rural EcuadorAmato, Heather K., Loayza, Fernanda, Salinas, Liseth, Paredes, Diana, Garcia, Daniela, Sarzosa, Soledad, Saraiva-Garcia, Carlos, Johnson, Timothy J., Pickering, Amy J., Riley, Lee W., Trueba, Gabriel and Graham, Jay P. (2023). Leveraging the COVID-19 pandemic as a natural experiment to assess changes in antibiotic use and antibiotic-resistant E. coli carriage in semi-rural Ecuador. Scientific Reports, 13 (1) 14854. doi: 10.1038/s41598-023-39532-5 |
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2023 Journal Article Evidence of host specificity in Lactobacillus johnsonii genomes and its influence on probiotic potential in poultryJohnson, Abigail, Miller, Elizabeth A., Weber, Bonnie, Figueroa, Cristian Flores, Aguayo, Jeannette Munoz, Johny, Anup Kollanoor, Noll, Sally, Brannon, Jeanine, Kozlowicz, Briana and Johnson, Timothy J. (2023). Evidence of host specificity in Lactobacillus johnsonii genomes and its influence on probiotic potential in poultry. Poultry Science, 102 (9) 102858, 1-13. doi: 10.1016/j.psj.2023.102858 |
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2023 Journal Article Effects of a postbiotic, with and without a saponin-based product, on turkey performanceChaney, Evan, Miller, Elizabeth A., Firman, Jeffrey, Binnebose, Andrea, Kuttappan, Vivek and Johnson, Timothy J. (2023). Effects of a postbiotic, with and without a saponin-based product, on turkey performance. Poultry Science, 102 (5) 102607, 1-5. doi: 10.1016/j.psj.2023.102607 |
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2023 Journal Article Complete genome sequences of two Pasteurella multocida isolates from seabirdsHashish, Amro, Johnson, Timothy J., Chundru, Dhiraj, Williams, Michele L., Sato, Yuko, Macedo, Nubia R., Clessin, Augustin, Gantelet, Hubert, Bost, Caroline, Tornos, Jeremy, Gamble, Amandine, LeCount, Karen J., Ghanem, Mostafa, Boulinier, Thierry and El-Gazzar, Mohamed (2023). Complete genome sequences of two Pasteurella multocida isolates from seabirds. Microbiology Resource Announcements, 12 (4) e01365-22. doi: 10.1128/mra.01365-22 |
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2023 Journal Article Efficacy of antibiotic and non-antibiotic interventions in preventing and treating necrotic enteritis in broiler chickens: a systematic reviewBueno, Irene, Ricke, Isabel, Hwang, Haejin, Smith, Emily, Nault, Andre, Johnson, Timothy J. and Singer, Randall S. (2023). Efficacy of antibiotic and non-antibiotic interventions in preventing and treating necrotic enteritis in broiler chickens: a systematic review. Avian Diseases, 67 (1), 20-32. doi: 10.1637/aviandiseases-D-22-00069 |
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2023 Journal Article IFI27 transcription is an early predictor for COVID-19 outcomes, a multi-cohort observational studyShojaei, Maryam, Shamshirian, Amir, Monkman, James, Grice, Laura, Tran, Minh, Tan, Chin Wee, Teo, Siok Min, Rodrigues Rossi, Gustavo, McCulloch, Timothy R., Nalos, Marek, Raei, Maedeh, Razavi, Alireza, Ghasemian, Roya, Gheibi, Mobina, Roozbeh, Fatemeh, Sly, Peter D., Spann, Kirsten M., Chew, Keng Yih, Zhu, Yanshan, Xia, Yao, Wells, Timothy J., Senegaglia, Alexandra Cristina, Kuniyoshi, Carmen Lúcia, Franck, Claudio Luciano, dos Santos, Anna Flavia Ribeiro, Noronha, Lucia de, Motamen, Sepideh, Valadan, Reza, Amjadi, Omolbanin ... Tang, Benjamin (2023). IFI27 transcription is an early predictor for COVID-19 outcomes, a multi-cohort observational study. Frontiers in Immunology, 13 1060438, 1-14. doi: 10.3389/fimmu.2022.1060438 |
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2022 Journal Article Estimating biofuel contaminant concentration from 4D ERT with mixing modelsGlaser, D. R., Henderson, R. D., Werkema, D. D., Johnson, T. J. and Versteeg, R. J. (2022). Estimating biofuel contaminant concentration from 4D ERT with mixing models. Journal of Contaminant Hydrology, 248 104027, 104027. doi: 10.1016/j.jconhyd.2022.104027 |
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2022 Journal Article CIS and TGF ‐β regulatory pathways influence immunity to bacterial infectionMcCulloch, Timothy R., Rossi, Gustavo R., Schreuder, Jaring, Belz, Gabrielle T., Wells, Timothy J. and Souza‐Fonseca‐Guimaraes, Fernando (2022). CIS and TGF ‐β regulatory pathways influence immunity to bacterial infection. Immunology, 167 (1), 54-63. doi: 10.1111/imm.13516 |
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2022 Journal Article Editorial: The Interplay of Host-Microbiome-Pathogen on Infectious DiseasesMaurer, John J., Simoes-Barbosa, Augusto, Johnson, Timothy J. and Conway, Tyrrell (2022). Editorial: The Interplay of Host-Microbiome-Pathogen on Infectious Diseases. Frontiers in Microbiology, 13 924807. doi: 10.3389/fmicb.2022.924807 |
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2022 Journal Article Genomic diversity and antimicrobial resistance of Prevotella species isolated from chronic lung disease airwaysWebb, Kasey A., Olagoke, Olusola, Baird, Timothy, Neill, Jane, Pham, Amy, Wells, Timothy J., Ramsay, Kay A., Bell, Scott C., Sarovich, Derek S. and Price, Erin P. (2022). Genomic diversity and antimicrobial resistance of Prevotella species isolated from chronic lung disease airways. Microbial Genomics, 8 (2) 000754. doi: 10.1099/mgen.0.000754 |
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2022 Journal Article Inhibition of the master regulator of Listeria monocytogenes virulence enables bacterial clearance from spacious replication vacuoles in infected macrophagesTran, Thao Thanh, Mathmann, Carmen D., Gatica-Andrades, Marcela, Rollo, Rachel F., Oelker, Melanie, Ljungberg, Johanna K., Nguyen, Tam T. K., Zamoshnikova, Alina, Kummari, Lalith K., Wyer, Orry J. K., Irvine, Katharine M., Melo-Bolívar, Javier, Gross, Annette, Brown, Darren, Mak, Jeffrey Y. W., Fairlie, David P., Hansford, Karl A., Cooper, Matthew A., Giri, Rabina, Schreiber, Veronika, Joseph, Shannon R., Simpson, Fiona, Barnett, Timothy C., Johansson, Jörgen, Dankers, Wendy, Harris, James, Wells, Timothy J., Kapetanovic, Ronan, Sweet, Matthew J. ... Blumenthal, Antje (2022). Inhibition of the master regulator of Listeria monocytogenes virulence enables bacterial clearance from spacious replication vacuoles in infected macrophages. PLoS Pathogens, 18 (1) e1010166, e1010166. doi: 10.1371/journal.ppat.1010166 |
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2022 Journal Article Effect of plant-derived antimicrobials against multidrug-resistant Salmonella Heidelberg in ground TurkeyDewi, Grace, Manjankattil, Shijinaraj, Peichel, Claire, Jia, Shiliang, Nair, Divek, Vickers, Zata, Johnson, Timothy J., Cardona, Carol, Noll, Sally and Johny, Anup Kollanoor (2022). Effect of plant-derived antimicrobials against multidrug-resistant Salmonella Heidelberg in ground Turkey. Poultry Science, 101 (3) 101581, 101581. doi: 10.1016/j.psj.2021.101581 |
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2021 Journal Article Molecular characteristics, ecology, and zoonotic potential of Escherichia coli strains that cause hemorrhagic pneumonia in animalsMoore, Meghan E. G., Paulin-Curlee, Geisa, Johnston, Brian D., Clabots, Connie, DebRoy, Chitrita, Johnson, Timothy J., Weber, Bonnie, Porter, Stephen, Armien, Anibal G. and Johnson, James R. (2021). Molecular characteristics, ecology, and zoonotic potential of Escherichia coli strains that cause hemorrhagic pneumonia in animals. Applied and Environmental Microbiology, 87 (23) e01471-21, 1-13. doi: 10.1128/AEM.01471-21 |
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2021 Journal Article Effect of caprylic acid alone or in combination with peracetic acid against multidrug-resistant Salmonella Heidelberg on chicken drumsticks in a soft scalding temperature-time setupManjankattil, Shijinaraj, Nair, Divek V. T., Peichel, Claire, Noll, Sally, Johnson, Timothy J., Cox, Ryan B., Donoghue, Annie M. and Johny, Anup Kollanoor (2021). Effect of caprylic acid alone or in combination with peracetic acid against multidrug-resistant Salmonella Heidelberg on chicken drumsticks in a soft scalding temperature-time setup. Poultry Science, 100 (11) 101421. doi: 10.1016/j.psj.2021.101421 |
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2021 Journal Article Inferior outcomes in lung transplant recipients with serum Pseudomonas aeruginosa specific cloaking antibodiesDivithotawela, Chandima, Pham, Amy, Bell, Peter T., Ledger, Emma L., Tan, Maxine, Yerkovich, Stephanie, Grant, Michelle, Hopkins, Peter M., Wells, Timothy J. and Chambers, Daniel C. (2021). Inferior outcomes in lung transplant recipients with serum Pseudomonas aeruginosa specific cloaking antibodies. The Journal of Heart and Lung Transplantation, 40 (9), 951-959. doi: 10.1016/j.healun.2021.05.016 |
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2021 Journal Article Anti-LPS IgA and IgG can inhibit serum killing of Pseudomonas aeruginosa in patients with cystic fibrosisPham, Amy, Ledger, Emma L., Coggon, Carrie F., Henderson, Ian R., Reid, David W., Bell, Scott C., Smith, Daniel J. and Wells, Timothy J. (2021). Anti-LPS IgA and IgG can inhibit serum killing of Pseudomonas aeruginosa in patients with cystic fibrosis. Infection and Immunity, 89 (12) e00412-21, e0041221. doi: 10.1128/iai.00412-21 |
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2021 Journal Article Oral vaccination reduces the effects of Lawsonia intracellularis challenge on the swine small and large intestine microbiomeLeite, Fernando L., Winfield, Brittanie, Miller, Elizabeth A., Weber, Bonnie P., Johnson, Timothy J., Sylvia, Fred, Vasquez, Erika, Vannucci, Fabio, Beckler, Dana and Isaacson, Richard E. (2021). Oral vaccination reduces the effects of Lawsonia intracellularis challenge on the swine small and large intestine microbiome. Frontiers in Veterinary Science, 8 692521. doi: 10.3389/fvets.2021.692521 |
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2021 Journal Article Comparison of antimicrobial-resistant Escherichia coli isolates from urban raccoons and domestic DogsWorsley-Tonks, Katherine E. L., Gehrt, Stanley D., Miller, Elizabeth A., Singer, Randall S., Bender, Jeff B., Forester, James D., McKenzie, Shane C., Travis, Dominic A., Johnson, Timothy J. and Craft, Meggan E. (2021). Comparison of antimicrobial-resistant Escherichia coli isolates from urban raccoons and domestic Dogs. Applied and Environmental Microbiology, 87 (15) e00484-21, 1-14. doi: 10.1128/AEM.00484-21 |
