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2021 Journal Article Antibody-dependent enhancement of bacterial disease: prevalence, mechanisms and treatmentTorres, Von Vergel L., Coggon, Carrie F. and Wells, Timothy J. (2021). Antibody-dependent enhancement of bacterial disease: prevalence, mechanisms and treatment. Infection and Immunity, 89 (4) e00054-21, 1-15. doi: 10.1128/IAI.00054-21 |
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2021 Journal Article Streptococcus species enriched in the oral cavity of patients with RA are a source of peptidoglycan-polysaccharide polymers that can induce arthritis in miceMoentadj, Rabia, Wang, Yiwen, Bowerman, Kate, Rehaume, Linda, Nel, Hendrik, O Cuiv, Paraic, Stephens, Juliette, Baharom, Amalina, Maradana, Muralidhara, Lakis, Vanessa, Morrison, Mark, Wells, Timothy, Hugenholtz, Philip, Benham, Helen, Le Cao, Kim-Anh and Thomas, Ranjeny (2021). Streptococcus species enriched in the oral cavity of patients with RA are a source of peptidoglycan-polysaccharide polymers that can induce arthritis in mice. Annals of the Rheumatic Diseases, 80 (5) annrheumdis-2020-219009, annrheumdis-2020. doi: 10.1136/annrheumdis-2020-219009 |
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2020 Journal Article Structure of dual-BON domain protein DolP identifies phospholipid binding as a new mechanism for protein localizationBryant, Jack Alfred, Morris, Faye C., Knowles, Timothy J., Maderbocus, Riyaz, Heinz, Eva, Boelter, Gabriela, Alodaini, Dema, Colyer, Adam, Wotherspoon, Peter J., Staunton, Kara A., Jeeves, Mark, Browning, Douglas F., Sevastsyanovich, Yanina R., Wells, Timothy J., Rossiter, Amanda E., Bavro, Vassiliy N., Sridhar, Pooja, Ward, Douglas G., Chong, Zhi-Soon, Goodall, Emily C. A., Icke, Christopher, Teo, Alvin, Chng, Shu-Sin, Roper, David I., Lithgow, Trevor, Cunningham, Adam F., Banzhaf, Manuel, Overduin, Michael and Henderson, Ian R. (2020). Structure of dual-BON domain protein DolP identifies phospholipid binding as a new mechanism for protein localization. eLife, 9 e62614, 1-61. doi: 10.7554/elife.62614 |
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2020 Journal Article Merging metagenomics and spatial epidemiology to understand the distribution of antimicrobial resistance genes from Enterobacteriaceae in wild owlsMiller, Elizabeth A., Ponder, Julia B., Willette, Michelle, Johnson, Timothy J. and VanderWaal, Kimberly L. (2020). Merging metagenomics and spatial epidemiology to understand the distribution of antimicrobial resistance genes from Enterobacteriaceae in wild owls. Applied and Environmental Microbiology, 86 (20) e00571-20, 1-16. doi: 10.1128/AEM.00571-20 |
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2020 Journal Article Evaluation of sampling methods for the study of avian respiratory microbiotaAbundo, Michael Edward C., Ngunjiri, John M., Taylor, Kara J. M., Ji, Hana, Ghorbani, Amir, Mahesh, K. C., Elaish, Mohamed, Jang, Hyesun, Weber, Bonnie, Johnson, Timothy J. and Lee, Chang-Won (2020). Evaluation of sampling methods for the study of avian respiratory microbiota. Avian Diseases, 64 (3), 277-285. |
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2020 Journal Article Genomic landscape of multi-drug resistant avian pathogenic Escherichia coli recovered from broilersAzam, Mariya, Mohsin, Mashkoor, Johnson, Timothy J., Smith, Emily A., Johnson, Abigail, Umair, Muhammad, Saleemi, Muhammad Kashif and Sajjad-ur-Rahman, (2020). Genomic landscape of multi-drug resistant avian pathogenic Escherichia coli recovered from broilers. Veterinary Microbiology, 247 108766, 1-7. doi: 10.1016/j.vetmic.2020.108766 |
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2020 Journal Article Genomic landscape of Ornithobacterium rhinotracheale in commercial turkey production in the United StatesSmith, Emily A., Miller, Elizabeth A., Weber, Bonnie P., Aguayo, Jeannette Munoz, Figueroa, Cristian Flores, Huisinga, Jared, Nezworski, Jill, Kromm, Michelle, Wileman, Ben and Johnson, Timothy J. (2020). Genomic landscape of Ornithobacterium rhinotracheale in commercial turkey production in the United States. Applied and Environmental Microbiology, 86 (11) e02874-19, 1-9. doi: 10.1128/AEM.02874-19 |
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2020 Journal Article Emergence of a Novel <i>Salmonella enterica</i> Serotype Reading Clonal Group Is Linked to Its Expansion in Commercial Turkey Production, Resulting in Unanticipated Human Illness in North AmericaMiller, Elizabeth A., Elnekave, Ehud, Flores-Figueroa, Cristian, Johnson, Abigail, Kearney, Ashley, Munoz-Aguayo, Jeannette, Tagg, Kaitlin A., Tschetter, Lorelee, Weber, Bonnie P., Nadon, Celine A., Boxrud, Dave, Singer, Randall S., Folster, Jason P. and Johnson, Timothy J. (2020). Emergence of a Novel Salmonella enterica Serotype Reading Clonal Group Is Linked to Its Expansion in Commercial Turkey Production, Resulting in Unanticipated Human Illness in North America. Msphere, 5 (2) e00056-20. doi: 10.1128/mSphere.00056-20 |
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2020 Journal Article Treatment of life-threatening Pseudomonas aeruginosa infection by pheresis of inhibitory antibodiesDivithotawela, Chandima, Pham, Amy, Ledger, Emma L., Hopkins, Peter, Wells, Timothy J. and Chambers, Daniel (2020). Treatment of life-threatening Pseudomonas aeruginosa infection by pheresis of inhibitory antibodies. Journal of Heart and Lung Transplantation, 39 (1), 87-89. doi: 10.1016/j.healun.2019.10.001 |
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2019 Journal Article Bacterial flagellin promotes viral entry via an NF-kB and Toll Like Receptor 5 dependent pathwayBenedikz, Elizabeth K., Bailey, Dalan, Cook, Charlotte N. L., Gonçalves-Carneiro, Daniel, Buckner, Michelle M. C., Blair, Jessica M. A., Wells, Timothy J., Fletcher, Nicola F., Goodall, Margaret, Flores-Langarica, Adriana, Kingsley, Robert A., Madsen, Jens, Teeling, Jessica, Johnston, Sebastian L., MacLennan, Calman A., Balfe, Peter, Henderson, Ian R., Piddock, Laura J. V., Cunningham, Adam F. and McKeating, Jane A. (2019). Bacterial flagellin promotes viral entry via an NF-kB and Toll Like Receptor 5 dependent pathway. Scientific Reports, 9 (1) 7903. doi: 10.1038/s41598-019-44263-7 |
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2019 Journal Article Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expressionWard, Tonya L., Weber, Bonnie P., Mendoza, Kristelle M., Danzeisen, Jessica L., Llop, Katharine, Lang, Kevin, Clayton, Jonathan B., Grace, Elicia, Brannon, Jeanine, Radovic, Igor, Beauclaire, Mai, Heisel, Timothy J., Knights, Dan, Cardona, Carol, Kogut, Mike, Johnson, Casey, Noll, Sally L., Arsenault, Ryan, Reed, Kent M. and Johnson, Timothy J. (2019). Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expression. mBio, 10 (5) e02171-19, 1-17. doi: 10.1128/mBio.02171-19 |
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2019 Journal Article A cluster of carbapenemase-producing <i>Enterobacter cloacae</i> complex ST171 at a tertiary care center demonstrating an ongoing regional threatPereira, Edwin C., Anacker, Melissa, Houseman, Jeana, Horn, Mary E., Johnson, Timothy J., Lynfield, Ruth, Vagnone, Paula Snippes, Witwer, Medora and Kline, Susan (2019). A cluster of carbapenemase-producing Enterobacter cloacae complex ST171 at a tertiary care center demonstrating an ongoing regional threat. American Journal of Infection Control, 47 (7), 767-772. doi: 10.1016/j.ajic.2018.12.016 |
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2019 Journal Article Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community compositionFountain-Jones, Nicholas M., Clark, Nicholas J., Kinsley, Amy C., Carstensen, Michelle, Forester, James, Johnson, Timothy J., Miller, Elizabeth A., Moore, Seth, Wolf, Tiffany M. and Craft, Meggan E. (2019). Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community composition. Journal of Animal Ecology, 89 (3) 1365-2656.13154, 1-12. doi: 10.1111/1365-2656.13154 |
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2018 Journal Article YraP Contributes to Cell Envelope Integrity and Virulence of Salmonella enterica Serovar TyphimuriumMorris, Faye C., Wells, Timothy J., Bryant, Jack A., Schager, Anna E., Sevastsyanovich, Yanina R., Squire, Derrick J. P., Marshall, Jennifer, Isom, Georgia L., Rooke, Jessica, Maderbocus, Riyaz, Knowles, Timothy J., Overduin, Michael, Rossiter, Amanda E., Cunningham, Adam F. and Henderson, Ian R. (2018). YraP Contributes to Cell Envelope Integrity and Virulence of Salmonella enterica Serovar Typhimurium. Infection and Immunity, 86 (11) e00829-17. doi: 10.1128/IAI.00829-17 |
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2018 Journal Article Escherichia coli ST131-H22 as a Foodborne UropathogenLiu, Cindy M., Stegger, Marc, Aziz, Maliha, Johnson, Timothy J., Waits, Kara, Nordstrom, Lora, Gauld, Lori, Weaver, Brett, Rolland, Diana, Statham, Sally, Horwinski, Joseph, Sariya, Sanjeev, Davis, Gregg S., Sokurenko, Evgeni, Keim, Paul, Johnson, James R. and Price, Lance B. (2018). Escherichia coli ST131-H22 as a Foodborne Uropathogen. Mbio, 9 (4) e00470-18. doi: 10.1128/mBio.00470-18 |
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2018 Journal Article A novel method of serum resistance by Escherichia coli that causes urosepsisCoggon, Carrie F., Jiang, Andrew, Goh, Kelvin G. K., Henderson, Ian R., Schembri, Mark A. and Wells, Timothy J. (2018). A novel method of serum resistance by Escherichia coli that causes urosepsis. mBio, 9 (3) e00920-18, e00920-18. doi: 10.1128/mbio.00920-18 |
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2018 Journal Article Role of a single noncoding nucleotide in the evolution of an epidemic African clade of SalmonellaHammarlof, Disa L., Kroger, Carsten, Owen, Sian V., Canals, Rocio, Lacharme-Lora, Lizeth, Wenner, Nicolas, Schager, Anna E., Wells, Timothy J., Henderson, Ian R., Wigley, Paul, Hokamp, Karsten, Feasey, Nicholas A., Gordon, Melita A. and Hinton, Jay C. D. (2018). Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella. Proceedings of the National Academy of Sciences of the United States of America, 115 (11), E2614-E2623. doi: 10.1073/pnas.1714718115 |
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2017 Journal Article Antigen localization influences the magnitude and kinetics of endogenous adaptive immune response to recombinant Salmonella vaccinesSevastsyanovich, Yanina R., Withers, David R., Marriott, Claire L., Morris, Faye C., Wells, Timothy J., Browning, Douglas F., Beriotto, Irene, Ross, Ewan, Ali, Hossam Omar, Wardius, Catherine A., Cunningham, Adam F., Henderson, Ian R. and Rossiter, Amanda E. (2017). Antigen localization influences the magnitude and kinetics of endogenous adaptive immune response to recombinant Salmonella vaccines. Infection and Immunity, 85 (12) e00593-17, e00593-17. doi: 10.1128/iai.00593-17 |
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2017 Journal Article Inactivation of Transcriptional Regulators during Within-Household Evolution of Escherichia coliKisiela, Dagmara I., Radey, Matthew, Paul, Sandip, Porter, Stephen, Polukhina, Kseniya, Tchesnokova, Veronika, Shevchenko, Sofiya, Chan, Diana, Aziz, Maliha, Johnson, Timothy J., Price, Lance B., Johnson, James R. and Sokurenko, Evgeni V. (2017). Inactivation of Transcriptional Regulators during Within-Household Evolution of Escherichia coli. Journal of Bacteriology, 199 (13) e00036. doi: 10.1128/JB.00036-17 |
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2016 Journal Article Captivity humanizes the primate microbiomeClayton, Jonathan B., Vangay, Pajau, Hu Huang, , Ward, Tonya, Hillmann, Benjamin M., Al-Ghalith, Gabriel A., Travis, Dominic A., Ha Thang Long, , Bui Van Tuan, , Vo Van Minh, , Cabana, Francis, Nadler, Tilo, Toddes, Barbara, Murphy, Tami, Glander, Kenneth E., Johnson, Timothy J. and Knights, Dan (2016). Captivity humanizes the primate microbiome. Proceedings of the National Academy of Sciences of the United States of America, 113 (37), 10376-10381. doi: 10.1073/pnas.1521835113 |
