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2021 Journal Article BamA and BamD are essential for the secretion of trimeric autotransporter adhesinsRooke, Jessica L., Icke, Christopher, Wells, Timothy J, Rossiter, Amanda E., Browning, Douglas F., Morris, Faye C., Leo, Jack C., Schütz, Monika S., Autenrieth, Ingo B., Cunningham, Adam F., Linke, Dirk and Henderson, Ian R. (2021). BamA and BamD are essential for the secretion of trimeric autotransporter adhesins. Frontiers in Microbiology, 12 628879, 1-10. doi: 10.3389/fmicb.2021.628879 |
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2021 Journal Article Environmental spread of extended spectrum beta-lactamase (ESBL) producing Escherichia coli and ESBL genes among children and domestic animals in EcuadorSalinas, Liseth, Loayza, Fernanda, Cardenas, Paul, Saraiva, Carlos, Johnson, Timothy J., Amato, Heather, Graham, Jay P. and Trueba, Gabriel (2021). Environmental spread of extended spectrum beta-lactamase (ESBL) producing Escherichia coli and ESBL genes among children and domestic animals in Ecuador. Environmental Health Perspectives, 129 (2) 027007, 1-10. doi: 10.1289/EHP7729 |
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2021 Journal Article Antibody-dependent enhancement of bacterial disease: prevalence, mechanisms and treatmentTorres, Von Vergel L., Coggon, Carrie F. and Wells, Timothy J. (2021). Antibody-dependent enhancement of bacterial disease: prevalence, mechanisms and treatment. Infection and Immunity, 89 (4) e00054-21, 1-15. doi: 10.1128/IAI.00054-21 |
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2021 Journal Article Streptococcus species enriched in the oral cavity of patients with RA are a source of peptidoglycan-polysaccharide polymers that can induce arthritis in miceMoentadj, Rabia, Wang, Yiwen, Bowerman, Kate, Rehaume, Linda, Nel, Hendrik, O Cuiv, Paraic, Stephens, Juliette, Baharom, Amalina, Maradana, Muralidhara, Lakis, Vanessa, Morrison, Mark, Wells, Timothy, Hugenholtz, Philip, Benham, Helen, Le Cao, Kim-Anh and Thomas, Ranjeny (2021). Streptococcus species enriched in the oral cavity of patients with RA are a source of peptidoglycan-polysaccharide polymers that can induce arthritis in mice. Annals of the Rheumatic Diseases, 80 (5) annrheumdis-2020-219009, annrheumdis-2020. doi: 10.1136/annrheumdis-2020-219009 |
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2021 Journal Article Assessment of two DNA extraction kits for profiling poultry respiratory microbiota from multiple sample typesAbundo, Michael E. C., Ngunjiri, John M., Taylor, Kara J. M., Ji, Hana, Ghorbani, Amir, Mahesh, K. C., Weber, Bonnie P., Johnson, Timothy J. and Lee, Chang-Won (2021). Assessment of two DNA extraction kits for profiling poultry respiratory microbiota from multiple sample types. PLoS One, 16 (1) e0241732, 1-19. doi: 10.1371/journal.pone.0241732 |
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2020 Journal Article Structure of dual-BON domain protein DolP identifies phospholipid binding as a new mechanism for protein localizationBryant, Jack Alfred, Morris, Faye C., Knowles, Timothy J., Maderbocus, Riyaz, Heinz, Eva, Boelter, Gabriela, Alodaini, Dema, Colyer, Adam, Wotherspoon, Peter J., Staunton, Kara A., Jeeves, Mark, Browning, Douglas F., Sevastsyanovich, Yanina R., Wells, Timothy J., Rossiter, Amanda E., Bavro, Vassiliy N., Sridhar, Pooja, Ward, Douglas G., Chong, Zhi-Soon, Goodall, Emily C. A., Icke, Christopher, Teo, Alvin, Chng, Shu-Sin, Roper, David I., Lithgow, Trevor, Cunningham, Adam F., Banzhaf, Manuel, Overduin, Michael and Henderson, Ian R. (2020). Structure of dual-BON domain protein DolP identifies phospholipid binding as a new mechanism for protein localization. eLife, 9 e62614, 1-61. doi: 10.7554/elife.62614 |
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2020 Journal Article Merging metagenomics and spatial epidemiology to understand the distribution of antimicrobial resistance genes from Enterobacteriaceae in wild owlsMiller, Elizabeth A., Ponder, Julia B., Willette, Michelle, Johnson, Timothy J. and VanderWaal, Kimberly L. (2020). Merging metagenomics and spatial epidemiology to understand the distribution of antimicrobial resistance genes from Enterobacteriaceae in wild owls. Applied and Environmental Microbiology, 86 (20) e00571-20, 1-16. doi: 10.1128/AEM.00571-20 |
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2020 Journal Article Genomic landscape of multi-drug resistant avian pathogenic Escherichia coli recovered from broilersAzam, Mariya, Mohsin, Mashkoor, Johnson, Timothy J., Smith, Emily A., Johnson, Abigail, Umair, Muhammad, Saleemi, Muhammad Kashif and Sajjad-ur-Rahman, (2020). Genomic landscape of multi-drug resistant avian pathogenic Escherichia coli recovered from broilers. Veterinary Microbiology, 247 108766, 1-7. doi: 10.1016/j.vetmic.2020.108766 |
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2020 Journal Article Characterization of antimicrobial resistance genes in Enterobacteriaceae carried by suburban mesocarnivores and locally owned and stray dogsWorsley-Tonks, Katherine E. L., Miller, Elizabeth A., Gehrt, Stanley D., McKenzie, Shane C., Travis, Dominic A., Johnson, Timothy J. and Craft, Meggan E. (2020). Characterization of antimicrobial resistance genes in Enterobacteriaceae carried by suburban mesocarnivores and locally owned and stray dogs. Zoonoses and Public Health, 67 (4), 460-466. doi: 10.1111/zph.12691 |
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2020 Journal Article Genomic landscape of Ornithobacterium rhinotracheale in commercial turkey production in the United StatesSmith, Emily A., Miller, Elizabeth A., Weber, Bonnie P., Aguayo, Jeannette Munoz, Figueroa, Cristian Flores, Huisinga, Jared, Nezworski, Jill, Kromm, Michelle, Wileman, Ben and Johnson, Timothy J. (2020). Genomic landscape of Ornithobacterium rhinotracheale in commercial turkey production in the United States. Applied and Environmental Microbiology, 86 (11) e02874-19, 1-9. doi: 10.1128/AEM.02874-19 |
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2020 Journal Article Treatment of life-threatening Pseudomonas aeruginosa infection by pheresis of inhibitory antibodiesDivithotawela, Chandima, Pham, Amy, Ledger, Emma L., Hopkins, Peter, Wells, Timothy J. and Chambers, Daniel (2020). Treatment of life-threatening Pseudomonas aeruginosa infection by pheresis of inhibitory antibodies. Journal of Heart and Lung Transplantation, 39 (1), 87-89. doi: 10.1016/j.healun.2019.10.001 |
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2019 Journal Article Bacterial flagellin promotes viral entry via an NF-kB and Toll Like Receptor 5 dependent pathwayBenedikz, Elizabeth K., Bailey, Dalan, Cook, Charlotte N. L., Gonçalves-Carneiro, Daniel, Buckner, Michelle M. C., Blair, Jessica M. A., Wells, Timothy J., Fletcher, Nicola F., Goodall, Margaret, Flores-Langarica, Adriana, Kingsley, Robert A., Madsen, Jens, Teeling, Jessica, Johnston, Sebastian L., MacLennan, Calman A., Balfe, Peter, Henderson, Ian R., Piddock, Laura J. V., Cunningham, Adam F. and McKeating, Jane A. (2019). Bacterial flagellin promotes viral entry via an NF-kB and Toll Like Receptor 5 dependent pathway. Scientific Reports, 9 (1) 7903. doi: 10.1038/s41598-019-44263-7 |
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2019 Journal Article Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expressionWard, Tonya L., Weber, Bonnie P., Mendoza, Kristelle M., Danzeisen, Jessica L., Llop, Katharine, Lang, Kevin, Clayton, Jonathan B., Grace, Elicia, Brannon, Jeanine, Radovic, Igor, Beauclaire, Mai, Heisel, Timothy J., Knights, Dan, Cardona, Carol, Kogut, Mike, Johnson, Casey, Noll, Sally L., Arsenault, Ryan, Reed, Kent M. and Johnson, Timothy J. (2019). Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expression. mBio, 10 (5) e02171-19, 1-17. doi: 10.1128/mBio.02171-19 |
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2019 Journal Article Diverse commensal Escherichia coli clones and plasmids disseminate antimicrobial resistance genes in domestic animals and children in a semirural community in EcuadorSalinas, Liseth, Cardenas, Paul, Johnson, Timothy J., Vasco, Karla, Graham, Jay and Trueba, Gabriel (2019). Diverse commensal Escherichia coli clones and plasmids disseminate antimicrobial resistance genes in domestic animals and children in a semirural community in Ecuador. mSphere, 4 (3) e00316-19, 1-10. doi: 10.1128/mSphere.00316-19 |
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2019 Journal Article Phylogenomic analysis of extraintestinal pathogenic Escherichia coli sequence type 1193, an emerging multidrug-resistant clonal groupJohnson, Timothy J., Elnekave, Ehud, Miller, Elizabeth A., Munoz-Aguayo, Jeannette, Figueroa, Cristian Flores, Johnston, Brian, Nielson, Daniel W., Logue, Catherine M. and Johnson, James R. (2019). Phylogenomic analysis of extraintestinal pathogenic Escherichia coli sequence type 1193, an emerging multidrug-resistant clonal group. Antimicrobial Agents and Chemotherapy, 63 (1) e01913-18, 1-15. doi: 10.1128/AAC.01913-18 |
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2019 Journal Article Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community compositionFountain-Jones, Nicholas M., Clark, Nicholas J., Kinsley, Amy C., Carstensen, Michelle, Forester, James, Johnson, Timothy J., Miller, Elizabeth A., Moore, Seth, Wolf, Tiffany M. and Craft, Meggan E. (2019). Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community composition. Journal of Animal Ecology, 89 (3) 1365-2656.13154, 1-12. doi: 10.1111/1365-2656.13154 |
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2019 Journal Article Assessing transmission of antimicrobial-resistant Escherichia coli in wild giraffe contact networksMiller, Elizabeth A., Johnson, Timothy J., Omondi, George, Atwill, Edward R., Isbell, Lynne A., McCowan, Brenda and VanderWaal, Kimberly (2019). Assessing transmission of antimicrobial-resistant Escherichia coli in wild giraffe contact networks. Applied and Environmental Microbiology, 85 (1) e02136-18, 1-15. doi: 10.1128/AEM.02136-18 |
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2018 Journal Article YraP Contributes to Cell Envelope Integrity and Virulence of Salmonella enterica Serovar TyphimuriumMorris, Faye C., Wells, Timothy J., Bryant, Jack A., Schager, Anna E., Sevastsyanovich, Yanina R., Squire, Derrick J. P., Marshall, Jennifer, Isom, Georgia L., Rooke, Jessica, Maderbocus, Riyaz, Knowles, Timothy J., Overduin, Michael, Rossiter, Amanda E., Cunningham, Adam F. and Henderson, Ian R. (2018). YraP Contributes to Cell Envelope Integrity and Virulence of Salmonella enterica Serovar Typhimurium. Infection and Immunity, 86 (11) e00829-17. doi: 10.1128/IAI.00829-17 |
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2018 Journal Article A novel method of serum resistance by Escherichia coli that causes urosepsisCoggon, Carrie F., Jiang, Andrew, Goh, Kelvin G. K., Henderson, Ian R., Schembri, Mark A. and Wells, Timothy J. (2018). A novel method of serum resistance by Escherichia coli that causes urosepsis. mBio, 9 (3) e00920-18, e00920-18. doi: 10.1128/mbio.00920-18 |
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2018 Journal Article Role of a single noncoding nucleotide in the evolution of an epidemic African clade of SalmonellaHammarlof, Disa L., Kroger, Carsten, Owen, Sian V., Canals, Rocio, Lacharme-Lora, Lizeth, Wenner, Nicolas, Schager, Anna E., Wells, Timothy J., Henderson, Ian R., Wigley, Paul, Hokamp, Karsten, Feasey, Nicholas A., Gordon, Melita A. and Hinton, Jay C. D. (2018). Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella. Proceedings of the National Academy of Sciences of the United States of America, 115 (11), E2614-E2623. doi: 10.1073/pnas.1714718115 |
